Dbfetch
ID JQ717262; SV 1; linear; genomic RNA; STD; VRL; 3368 BP. XX AC JQ717262; XX DT 21-AUG-2012 (Rel. 113, Created) DT 07-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE CAS virus isolate ATB segment S, complete sequence. XX KW . XX OS CAS virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Arenaviridae; Reptarenavirus. XX RN [1] RC Publication Status: Online-Only RP 1-3368 RX PUBMED; 22893382. RA Stenglein M.D., Sanders C., Kistler A.L., Ruby J.G., Franco J.Y., RA Reavill D.R., Dunker F., Derisi J.L.; RT "Identification, characterization, and in vitro culture of highly divergent RT arenaviruses from boa constrictors and annulated tree boas: candidate RT etiological agents for snake inclusion body disease"; RL MBio 3(4):e00180-e00112(2012). XX RN [2] RP 1-3368 RA Stenglein M.D., Franco J.Y., Kistler A.L., Sanders C., Reavill D., RA Dunker F., DeRisi J.L.; RT ; RL Submitted (28-FEB-2012) to the INSDC. RL Department of Biochemistry, University of California, San Francisco, Byers RL Hall, Rm s403c, 1700 4th St, San Francisco, CA 94158-2330, USA XX DR MD5; 9c3aaaf0c0005663ea18ee2457201070. DR EuropePMC; PMC6424867; 30918506. XX CC GenBank Accession Numbers JQ717261, JQ717262 represent sequences CC from the 2 segments of CAS virus isolate ATB. XX FH Key Location/Qualifiers FH FT source 1..3368 FT /organism="CAS virus" FT /segment="S" FT /host="Corallus annulatus" FT /isolate="ATB" FT /mol_type="genomic RNA" FT /country="USA:California" FT /collection_date="08-Jul-2009" FT /db_xref="taxon:1223561" FT gene 53..1234 FT /gene="GPC" FT CDS 53..1234 FT /codon_start=1 FT /gene="GPC" FT /product="glycoprotein" FT /note="GPC protein" FT /db_xref="GOA:J7H5L9" FT /db_xref="InterPro:IPR018154" FT /db_xref="PDB:4N21" FT /db_xref="PDB:4N23" FT /db_xref="UniProtKB/TrEMBL:J7H5L9" FT /protein_id="AFP93551.1" FT /translation="MHYPWLHSRGRTKCEAHTAKALIIILLTANCKALIAEMLQAAAGN FT DSSICHGMMFTEPVGSFLGINPNTTDDPFELHALSLNQNVTDKIMIFQNGLKLFGSETR FT NYSITSGPGLLVGFFGHSRSGVYKNLTFTNNTTFKICVSCKSRFNITLVVYNKFTKKAS FT TTICPDEFVRKKRSDVIVSYNLTCVILHNKNMITHHKTALNAEFSPRGLQQLSTKNDVE FT PGCDSNVGIFGHSSGTDAGWGIAGFFTLGITNSLQISEIEHVTDAIACKIIKTANYTTN FT ALFLLNKEESEIRDHVVEHELALNYLLAHQGGLCNVVKGPMCCSDIDDFSKNVSDMIDK FT VHEEMKKFYHEPDPFGGLGSIGFFGTLFGHILQWIPIILLTIFMCFICSWVKK" FT gene complement(1423..3177) FT /gene="NP" FT CDS complement(1423..3177) FT /codon_start=1 FT /gene="NP" FT /product="nucleoprotein" FT /note="NP protein" FT /db_xref="GOA:J7HCF9" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="UniProtKB/TrEMBL:J7HCF9" FT /protein_id="AFP93552.1" FT /translation="MNQLVVKKHLNKVLRPFQANLNNDLFKDVKLISAKININEVNDVL FT RRLRKETKTRDDLQKLRKLNKYLAEGTNVTSEQVVVEIDSTQMSDEDLMQCIDNLERIK FT KKAEYKGGRDKPSSKFEFETGLSHEDHERFSSLFASFVPQKPNPRNENNKPKSWIGVSS FT EELANQFGTSPSITVSIMLQRSGCTFKELFEALNDISLLDAGMFVNASVIKALSSKHHC FT LDVVEFSVPKNSSGYNITVKSVVKAANSISSHPKLEKIMVTDQNRTKLLSVLVAAQKDL FT QLEIKLDEERTLFEDLFYKVCVSPNGACVVSIRSNLTGRGWDNTVFKLRRPPPYAPSKL FT YPDLMDLDLPQSPPNKWLKDDSKKILKPVELETSGGIDDFLSSPSEDSPNELEIIDPRS FT LVLSDMAQKLFKNNKEVFIDIEGSATDPVEIALYGVEKNQYIHIFRLPKDSESFKKASR FT HSHGLIASDMADHINLFIDKNIKSMFSAIPKDQIVHCQGSDIKELLKFYGRSDINVADS FT KWKKKDYMSYHEGILDIVSDILPCKHSGTVKDKTGALTSPHCALVDCMMFACAAKGHIT FT IEDPKPVQ" XX SQ Sequence 3368 BP; 890 A; 695 C; 699 G; 1084 T; 0 other; cgcactgggg atccgagtta aagtatcaat cttccgtgta taatctcaag agatgcatta 60 tccatggctg cactccaggg gccgcaccaa gtgtgaggcc cacacagcaa aagccctcat 120 aataattctc ctgacagcca actgcaaagc cctcattgct gagatgctcc aagcagcagc 180 aggcaacgac agctccatct gtcatggaat gatgtttacc gaaccagttg gttcatttct 240 aggcataaat cccaacacca ctgatgaccc atttgaacta catgctcttt cactgaacca 300 aaatgtgact gacaagatca tgatctttca aaatggattg aaactatttg ggtctgaaac 360 aaggaattat agcataacca gcggtcctgg acttctggtt ggcttctttg gtcacagtag 420 atcaggagtc tataaaaacc ttactttcac aaacaacaca acattcaaaa tttgtgtttc 480 ttgcaaaagt agattcaata tcactcttgt tgtatacaat aaattcacaa agaaggctag 540 cacaaccatt tgccctgatg aatttgttcg aaagaagcgc agtgatgtaa tagtgtcata 600 caacttaacc tgtgttatat tacacaacaa gaacatgatc acccatcaca aaactgcttt 660 aaatgcagaa ttttcaccaa gaggcttaca acaattgtct accaagaatg atgtggaacc 720 tggttgtgac tctaatgttg gtatctttgg acatagcagt gggactgacg caggatgggg 780 gattgcaggt ttcttcacat tagggataac aaattcactt caaatatctg aaattgaaca 840 tgttacagat gctatagcgt gtaaaattat aaaaactgca aattatacaa ccaacgccct 900 gttcttattg aacaaagaag agtcagaaat tagagaccat gtagttgaac atgaactagc 960 cttgaattac ttactggcgc accaaggtgg cctttgcaat gtggtgaagg gcccaatgtg 1020 ttgttcagac attgatgatt tttcaaaaaa tgtctcagac atgattgaca aagtccatga 1080 agaaatgaag aaattttatc atgagccaga cccattcgga ggtctaggat caattgggtt 1140 ctttggaact ttgtttggac atattttgca gtggattcca atcatccttt taaccatatt 1200 tatgtgtttc atctgttcgt gggtcaaaaa atagagagac caaccgtccc gacgggtcgg 1260 ttgtctgctt gtctcccggt gggccgccct ggctgctctt ttcctccggg ggttgtcgct 1320 tggtggtttc ggttggtttg tctgtctccc ggcgggccgc cctggctgct cttttcctcc 1380 gggggttggg gcttggtggt cgtggctggg cctgcgggct ggttactgaa ctggtttggg 1440 gtcctcgatt gtgatatggc ccttagcagc acaagcaaac atcatgcaat ctactagtgc 1500 acagtgtgga ctagtcaagg caccagtttt gtcctttaca gttccagagt gtttgcatgg 1560 aaggatgtct gagactatgt ccaaaatgcc ttcgtggtaa ctcatataat cctttttctt 1620 ccactttgaa tctgctacat ttatgtcaga cctcccataa aacttcagaa gttctttgat 1680 gtcagagcct tgacaatgta caatctgatc ttttggtatt gcactaaaca ttgacttgat 1740 gtttttgtca ataaacaggt ttatgtggtc tgccatatct gaagcaatca acccatgtga 1800 gtgccttgac gcctttttga aactctctga gtctttaggg agtctgaaaa tatggatata 1860 ttgattcttt tcaacaccat aaagtgctat ttcaacaggg tctgtggctg aaccttctat 1920 gtcaatgaaa acctctttgt tattcttgaa caatttctgt gccatgtcag aaagaactaa 1980 agagcgtggg tcaattattt ctaactcatt aggactgtct tcactgggac tgctgagaaa 2040 atcatcaata ccaccactag tttccagctc aactggctta agaatctttt tagaatcatc 2100 ttttagccac ttgtttggtg gactttgtgg caggtctaaa tccattaaat cagggtatag 2160 ttttgatggt gcatatgggg gaggtctcct cagtttaaaa actgtgttgt cccaaccgcg 2220 acctgttaga tttgatctta tagacacaac acatgcacca tttggtgaaa cacatacctt 2280 ataaaacaag tcttcaaaaa gtgttctctc ctcatcaagt ttgatttcaa gttgtaggtc 2340 cttttgggct gcaacaagca cagacaaaag ctttgttctg ttctgatctg ttaccatgat 2400 cttttcaagc tttggatgac tacttattga attagcagcc ttcacaacac ttttcactgt 2460 gatattatag cctgatgagt tttttggtac actgaattca acaacatcaa gacagtgatg 2520 ttttgatgat aaagctttaa ttactgaggc attaacaaac attcctgcat ccagcaatga 2580 tatatcattt agagcttcaa acaattcttt gaatgtacat ccagatctct gtagcatgat 2640 ggagactgta atcgatggtg aagtaccaaa ctgatttgct agttcttctg agctaacacc 2700 aatccatgat ttgggtttgt tgttctcatt tctggggttg ggtttttgag ggacaaagct 2760 agcgaatagt gaactaaatc tctcatggtc ttcatgactg agaccagtct caaattcaaa 2820 tttgcttgag ggtttgtctc tgccaccttt gtattctgct tttttcttta ttcgttccag 2880 attgtcaatg cattgcatta gatcttcatc tgacatttgt gttgaatcta tttcaactac 2940 aacctgttct gaggtcacat ttgttccttc agccaagtat ttgttaagtt ttcttagttt 3000 ttgtagatca tccctggttt ttgtctcttt cctcagacgt cttagtacat cattcacctc 3060 attaatgttt atttttgcac taatcagttt gacatcttta aagaggtcgt tgtttaggtt 3120 ggcctggaaa ggccttagga ctttatttag atgtttcttt acaactaact gattcatggc 3180 cttgtttggg tggagggggc ctctgctgct gggctgttcg ttgttggcag gctgcttggg 3240 gcgcagggga cgagattgcc ctgcgcacaa ccacgctgtc caattccctg ttgagatgct 3300 gtccacctgt gtttattcac ttttgattta tcttaaagat agatcttgaa actcggatcc 3360 tctgtgcg 3368 //