ID JQ717261; SV 1; linear; genomic RNA; STD; VRL; 6812 BP. XX AC JQ717261; XX DT 21-AUG-2012 (Rel. 113, Created) DT 07-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE CAS virus isolate ATB segment L, complete sequence. XX KW . XX OS CAS virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Arenaviridae; Reptarenavirus. XX RN [1] RC Publication Status: Online-Only RP 1-6812 RX PUBMED; 22893382. RA Stenglein M.D., Sanders C., Kistler A.L., Ruby J.G., Franco J.Y., RA Reavill D.R., Dunker F., Derisi J.L.; RT "Identification, characterization, and in vitro culture of highly divergent RT arenaviruses from boa constrictors and annulated tree boas: candidate RT etiological agents for snake inclusion body disease"; RL MBio 3(4):e00180-e00112(2012). XX RN [2] RP 1-6812 RA Stenglein M.D., Franco J.Y., Kistler A.L., Sanders C., Reavill D., RA Dunker F., DeRisi J.L.; RT ; RL Submitted (28-FEB-2012) to the INSDC. RL Department of Biochemistry, University of California, San Francisco, Byers RL Hall, Rm s403c, 1700 4th St, San Francisco, CA 94158-2330, USA XX DR MD5; a52074ee32885dbf91a8358aea265780. DR EuropePMC; PMC3419519; 22893382. DR EuropePMC; PMC6424867; 30918506. XX CC GenBank Accession Numbers JQ717261, JQ717262 represent sequences CC from the 2 segments of CAS virus isolate ATB. XX FH Key Location/Qualifiers FH FT source 1..6812 FT /organism="CAS virus" FT /segment="L" FT /host="Corallus annulatus" FT /isolate="ATB" FT /mol_type="genomic RNA" FT /country="USA:California" FT /collection_date="08-Jul-2009" FT /db_xref="taxon:1223561" FT gene 76..423 FT /gene="Z" FT CDS 76..423 FT /codon_start=1 FT /gene="Z" FT /product="Z protein" FT /db_xref="GOA:J7H5K5" FT /db_xref="UniProtKB/TrEMBL:J7H5K5" FT /protein_id="AFP93549.1" FT /translation="MSMCINGTNSIGISNEVVLSLTLISSLTTLILLIINTITMFGLKA FT LTLKKRLSFCTACGKNSSLVKLPCKHKCCIQCPLANLKCPICYEPCLWCEKADGSLESL FT SLMKKNLQELP" FT gene complement(516..6656) FT /gene="L" FT CDS complement(516..6656) FT /codon_start=1 FT /gene="L" FT /product="L protein" FT /note="L polymerase" FT /db_xref="GOA:J7HBG8" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="PDB:5MUS" FT /db_xref="PDB:5MUY" FT /db_xref="PDB:5MUZ" FT /db_xref="PDB:5MV0" FT /db_xref="UniProtKB/TrEMBL:J7HBG8" FT /protein_id="AFP93550.1" FT /translation="MDPDTNLLKNVILEILSIEPDLYKQSSIVDDPYKLAMSAIRLRAT FT IHELNCCRDLGIIHNTKEISLNMVIDRAIPIHPTFQHIVPDGYTIDRANMTIIVLEAST FT RSMPSDQKRKITSDKLKYSGVEDHLKHEGWLFNIIVISETKPRNGNVPERLLFELLKLS FT LSILSYSDKSSQWISEEEYDELKRSLTTYDFKTLTSEFSGTKLYTDLDEPSETLDADIL FT SWLASLETQNKLPFNTAWDGPQITKLIHKWRDIELQPKDYKPLRLMRLMSSATTGLNLP FT TKHLSLLNKLKSLNLLNSRRHQNILYDYMAFMSLPEMNDYPSGWFPSVNDRLVSVKSID FT SNFRQLEKLKKRLMISMFKLQASTPKGYIHDLLKDAIEMVKSCKIVKPNFKMRNRGPVP FT EPFINYKIAREREGKTKDYNNIDKQRIEDCALNLLLSQKTKSCPRSSNETEYFFQSRKG FT QLLIYKASGEGQKAFSLLVETQVAKNHHVNIFLSFNINPSRLFPLIFSSESINAVLRQY FT KDLLTFIDTPIADITDNVIKSQQAINPFLTSNIMTEELAKQTLHKLKVLIYGVLTNPTK FT RLQVELQSQRYYIMDALSLIHHKDLVSKVVGNCITTDEYFLRSLAHDLINTVLSCGNMS FT LFLKVTWCLNISYLCHLITKESPDRLNDMRDCFEKFMKPKIEFMSNPIINSKNVDELID FT KFEDESERFFLNAPTIEVKPSVYKPVMSDFLRWVKMNKFNGQNGEPLLSDENVLSSSVD FT VLDLTSNKSTFKRTKNGEIESALDVLYNPKLIIKRIICEKLHKNTVKSSSIKERNKGIT FT TEKSTIIVKLEELSSTIERIIGDEGLLDELEYGEFLLQMLDVADEIKEEITNKAGVPDE FT KELTNYEIVLETISSIVGTESKNLIKSTCMSTKLSDLTSDILSEDCMKEIIESVITRLP FT SSFPRDAELVSLDNVSAGLVVARLQEGDIFSSFKFLLLWAGFNNFQGTYTHHSGPQSSI FT LKLSDKYRKKMMISSRVTNSESIQERLLNVSFGAPTLRNILFSTLDMDIKNSEIGPNNK FT LLQFGLSFKEQVGGPRELYVGDSDTKLITRVLEESSRNLGSLLENSCLSSEKKFDSFMK FT EISRAFYNGYIILSMDHSKWGPYNSPIQYHMLYEALEEIRGANGKKLNLAFAKTILKWH FT LFKAVEVPVTIIEDIYQTMTDISLNNRERRPDKERSYETYFINQLKTKKIKTHDNKVPS FT QIHSYFDMGQGILHYTSDLYGSLASEYICNKVNELFNIKLISMNTSDDMVVIVKRMFRA FT KHINSIREEMMYLMNYIYALSNFLNKHVSPKYCCSPLVGEFKSHFEVEGKVVPLFIKFF FT SACIGNFRCKNPTELFNTCDTIVEQGVCNGLSLTVADCLKKRMVNMLDWLGYSSDPQMH FT PHTSRQQDWLMGCLSYRKLRSLETWLLENGVEELTLDVVRGKLYEVIQSLRMRMIAPIV FT ALEKMRDVVRTHLGKIDIWFPTLWGGFRLIVRSKLNLGQTLVESCENPLVKKLMNHYSR FT FTKQGLGLLISEGLERSAFQSSVVTGFIGLSISLSGPCVKSENGNFIPIHQSKQITKEV FT CEVYTTLLMDSVCSIGDWVCGEDRQLNKFQPHGVYVRTSLINTPTFNYGLDELTATLEL FT TSPELFDKFLATLVPIDKRLNLRTNWSVRPEMELLVECSKLGMSVFDGKFDRKEESVML FT TEYFKLEHLVTRSLPLQKTHKSGTAVQELNRICDGMILSSILRPQMVEPSLIGDVLKTE FT PFTSSLEVLKDIKVSGLMRYIKQVLLGRKSYYKFGEEHADGDQNLFDYQFTGTPEEPIK FT GYWTTTISYRDSKPKISLTIRQEFVEGGVESQAVLATVVGRPHLQDFLLLKRKHLEYSD FT YPESIDLIEFGDVKVIEKTVGHGQPVVLYMASLFPIGLTKIAEQGIGCHNEKNDATLKS FT LLKTAILNMTPDDVSLLPRSKLDAIDHVVRNVYLRFNNSSAVSYGLHKLQSFEKILQLN FT GRIYETKESTLVFHHKKGVLVEDLKGLMSYKTLRVSEWREKQEPEEARVEVLEE" XX SQ Sequence 6812 BP; 1879 A; 1436 C; 1194 G; 2303 T; 0 other; cgcactgggg atccgcgttt cagtataaat cttccaaggt tctactgaag ttctacatct 60 ctaagtgcaa agccaatgag tatgtgcatc aacggcacaa acagcattgg tatctccaac 120 gaggttgtcc tctccctaac tctcatctcc agtctcacca ccctgatact cctaatcata 180 aacaccatca caatgtttgg tctaaaggcc ctcacattga agaagagact cagtttctgc 240 actgcctgtg gcaagaactc aagtctggtc aaactaccat gcaagcacaa atgctgcatt 300 cagtgtcctc ttgctaatct gaaatgtccc atctgctatg agccttgttt gtggtgcgaa 360 aaagctgatg gctcacttga gtctctctca ctgatgaaga agaacctgca agaactcccc 420 taagaccaac cacagcacgc agcgcccggc ggacgggtcg ggcgtgcgcc tgtgcctgct 480 cttgccgtgt ctgcggctgg ggctgtcctg gggacctact cctccagcac ttcaactctg 540 gcctcctcgg gctcctgctt ctctctccac tcagaaaccc taagagtttt atatgacatc 600 aaccccttta gatcctcaac aagtacacct ttcttatggt gaaacactaa agttgattcc 660 tttgtctcat agattctccc attcaattgt aagatctttt caaacgattg cagtttgtgg 720 agaccataac tgacagcact tgaattatta aaccttaggt aaacatttct aacaacatgg 780 tctatggcat ccaatttaga tctcggtaga agtgacacat catccggtgt catgttcaga 840 attgcagttt taaggaggct tttaagagtt gcatcattct tctcattatg gcacccaatg 900 ccctgttctg caattttggt taaaccaatt ggaaatagtg atgccatgta caacacgaca 960 ggctgaccgt gcccaactgt cttttcaatc actttaacat cgccaaactc aattagatca 1020 atcgactcag gataatcaga atattctaag tgttttctct tcagtagtag aaagtcttga 1080 agatgaggcc tacctaccac agtggctaac actgcctgtg actccacacc cccttccaca 1140 aactcttgcc tgatggtcaa agaaatcttt ggttttgaat ccctatagga aatagttgta 1200 gtccagtatc ctttaattgg ttcttcagga gttcctgtaa actgataatc aaaaaggttc 1260 tgatcaccat cagcatgttc ctcaccaaat ttgtagtatg attttctgcc aagcagcact 1320 tgcttaatat atctcatcaa tccactaacc ttgatatcct ttagtacctc tagactactg 1380 gtaaatggtt cagtcttcaa cacatcacca attaaagatg gctctaccat ttgtggtctg 1440 agtattgaag ataatatcat cccatcacaa attctgttta gttcttgtac tgcagtacca 1500 gatttgtgag ttttttgaag tggtaatgat ctagtaacta ggtgttctaa tttaaaatac 1560 tcagtcagca ttacagattc ttccttccta tcaaacttac catcaaaaac agacatccct 1620 aactttgaac actcaacaag cagctccatt tcgggtctta cagaccaatt tgttctcagg 1680 ttgagccttt tgtcaattgg cacaagtgtg gctagaaact tgtcaaacaa ctctggtgat 1740 gttagctcca atgttgcagt taattcatcc aatccatagt tgaaagttgg tgtgtttata 1800 agacttgttc taacatacac accatgtggt tggaatttgt tcaactgtct gtcctcacca 1860 caaacccaat caccaataga acaaacagag tccattagta aggttgtata aacttcacaa 1920 acctcttttg tgatctgttt tgattggtga attggaatga aattcccatt ttctgacttc 1980 acacaaggcc cagataaact aattgacaag cctataaacc ctgtcacaac tgaactctga 2040 aatgctgatc tttccaaacc ttcgctgatt aagagtccca gaccttgctt agtgaatcgt 2100 gagtagtgat tcatcagttt tttgactaat ggattctcac agctttctac aagagtctga 2160 ccaagattta acttgcttct tacaatgagt cggaaaccac cccacagagt tggaaaccat 2220 atatctattt tacccagatg tgtccttacc acatctctca ttttctcaag tgctactatt 2280 ggtgcaatca ttctcatcct aaggctttgg attacctcat aaagcttacc cctgacaaca 2340 tcaagagtca actcctcaac accattctcc aacagccaag tttctaatga cctcagtttt 2400 ctataactca agcagcccat caaccaatct tgttgtcgac tggtgtgtgg gtgcatttga 2460 gggtcagaac tataacccag ccaatctaac atattgacca ttctcttttt gagacagtct 2520 gcaactgtca atgacaaacc attacaaact ccttgttcaa caattgtgtc acaagtatta 2580 aatagttctg taggattttt acatctaaag tttcctatac aagctgagaa aaacttaata 2640 aatagaggaa caactttacc ttcaacctca aagtgtgact tgaattcacc tacaagaggg 2700 ctacaacaat actttggtga aacatgtttg tttaggaagt ttgacagtgc atatatataa 2760 ttcattagat acatcatttc ttctctaatg ctatttatgt gttttgctct aaacattctt 2820 tttacaatca ctaccatgtc atctgatgtg ttcatggaga ttaatttaat gttgaagagt 2880 tcattgactt tgttacaaat atattctgag gccaatgagc cataaagatc agatgtatag 2940 tgtaatatcc cttgtcccat gtcaaaataa ctgtgtattt gagaaggcac cttattgtca 3000 tgtgtcttta ttttctttgt tttcaactgg tttatgaaat aggtttcata gcttctttcc 3060 ttgtcaggtc gcctttcacg attgtttaaa ctaatatctg tcattgtttg ataaatgtct 3120 tcaattattg tcacaggtac ttcaacagcc ttaaataggt gccacttgag aattgttttt 3180 gcaaaggcca aattcaactt tttcccatta gctcctctta tttcttcaag tgcctcatac 3240 aacatatggt actgaattgg actattgtaa ggcccccatt ttgaatgatc catacttagt 3300 atgatataac cattatagaa ggctctactt atctctttca taaaactgtc aaacttcttc 3360 tcagaagaca aacagctatt ctccagcaaa gagcccaaat tccttgacga ttcttcaagc 3420 actctagtga tcagttttgt gtctgagtca ccaacataaa gttctcttgg ccctccgact 3480 tgttccttaa atgatagtcc aaattggagc aatttgttgt taggccctat ttcagagttc 3540 tttatatcca tatctaatgt cgaaaacaga atgtttctca gtgttggtgc accaaaacta 3600 acatttaaca accgttcttg aattgactct gaatttgtga ctctacttga aatcatcatc 3660 ttttttctgt acttgtctga taattttaga atggaacttt ggggaccaga atggtgtgtg 3720 tatgtccctt gaaaattgtt gaatcccgcc cataaaagaa gaaatttgaa acttgagaaa 3780 atgtcacctt cctgtaatct agcaactact aaacctgctg aaacattatc taaagacact 3840 aattcagcat cccttgggaa agatgagggt aatctggtta tgactgattc aatgatctcc 3900 ttcatgcagt cttctgacaa aatgtcactt gtcaagtctg atagttttgt tgacatgcat 3960 gttgacttga taaggttctt ggactcagta cctacaatag aactaatagt ttcaagaaca 4020 atttcataat tagttagttc tttctcatct gggaccccag ccttgtttgt gatttcttct 4080 ttgatctcat cagcaacatc cagcatttgc aacaaaaatt caccatactc cagttcatct 4140 agcaacccct catccccgat gattctttca attgttgagc taagttcttc aagcttgaca 4200 attattgtag acttctctgt ggtgatacct ttattccttt ctttgatgga actggatttc 4260 actgtgtttt tgtgtaactt ctcacaaatt atgcgtttta taattaattt tgggttgtat 4320 aaaacatcaa gtgcactctc aatttcacca ttttttgtcc ttttaaaggt gcttttgtta 4380 gatgtgagat ccaatacatc aaccgaggac gacaaaacat tctcatcaga cagaagtggt 4440 tcaccatttt gtccattaaa cttgttcatt ttaacccacc gcaagaagtc gctcatgact 4500 ggcttgtaaa ctgatggctt tacttcaata gtgggtgcat ttaaaaagaa tctttctgac 4560 tcatcctcaa acttgtctat taattcatca acattttttg aattaataat gggatttgac 4620 atgaactcaa ttttgggttt catgaacttc tcaaagcagt ctcgcatgtc atttaatcta 4680 tcaggtgatt cttttgtaat caagtgacaa aggtaggata tattcaaaca ccaagtgact 4740 tttaaaaaca aactcatgtt tccacagctt aatacagtat tgattaagtc atgtgcaagg 4800 cttcttagaa agtactcatc tgttgtgata caattaccaa caactttact gaccaggtcc 4860 ttatggtgta ttagtgataa ggcatccatt atataatatc tttgtgactg taactctact 4920 tgtagtcttt tagttggatt tgtcaacact ccataaatca atacctttaa cttatgcaat 4980 gtttgttttg ctagctcttc cgtcataatg tttgatgtaa gaaatgggtt aatagcttgt 5040 tgactcttaa ttacattgtc tgttatatca gcaatcggtg tgtcaataaa tgttaataaa 5100 tctttgtatt gtctgagtac ggcattgata ctctcactgg agaatatcag tggaaacagt 5160 ctagatggat taatattaaa ggataaaaat atatttacgt gatgattctt agcaacctgg 5220 gtttccacaa gcaaactgaa tgccttttga ccttcaccag aagctttgta gatcaatagc 5280 tgtccttttc tgctttggaa gaaatattca gtctcattac ttgacctagg acaactcttt 5340 gttttttgag ataacagaag atttaaagca caatcttcta ttctttgctt gtctatgttg 5400 ttatagtcct ttgtttttcc ctctcgttct cgggcaatct tgtagtttat gaatggctca 5460 gggactggac ctctgttcct catcttaaaa ttgggtttta caattttaca tgacttcacc 5520 atttcaatgg catctttgag taaatcgtgt atgtagcctt ttggtgtgga agcttgtagt 5580 ttgaacattg agatcatcaa tcgtttcttt agcttttcca attgtctaaa attggagtca 5640 atagatttga cactcactag tctgtcattc acacttggaa accagccact tgggtaatca 5700 ttcatttctg gtagactcat gaacgccata taatcataga gaatgttttg atgtcttctt 5760 gagtttaata agtttaaaga tttaagttta ttgagcaaac tcaaatgttt agttggaagg 5820 tttagacctg ttgttgcaga gctcattaat ctcatgagcc tcaagggctt gtaatcttta 5880 ggctggagct ctatgtctct ccacttatga attagctttg ttatctgtgg cccatcccat 5940 gctgtattga agggtaattt attttgtgtt tctaaacttg caagccatga gagaatatcg 6000 gcgtctagtg tctcagaggg ttcatccaag tctgtgtaca actttgtgcc actaaactct 6060 gatgttaaag ttttaaaatc ataagttgtt aatgatcttt ttaactcatc atattcttct 6120 tcactaatcc attgggatga tttgtcagaa tatgacaaga ttgataatga caattttagt 6180 aactcaaaaa gtagtcgctc tggcacattg ccgtttctgg gttttgtttc tgaaataaca 6240 atgatgttga aaagccaacc ttcatgcttt agatgatctt ctacaccact atacttgagc 6300 ttgtctgatg taatcttcct tttttggtcg gatggcattg accgtgtgct ggcttctagt 6360 acaattatag tcatgttggc tctatcaata gtgtacccat caggtacaat gtgttggaat 6420 gttgggtgaa ttggaattgc tctgtcgatt accatattca gtgatatttc tttcgtgttg 6480 tgaataattc ctaggtctct gcagcagtta agttcatgga tggttgctct taatctgatt 6540 gcactcatgg ctaacttgta ggggtcatcc actattgatg actgtttgta aaggtcaggt 6600 tcaatgctta gaatctcaag aatgacgttt tttaggaggt tggtgtccgg gtccattgcc 6660 ctcgtggctg gtctgggctc tgccgctccc tccgtgcgtg cccgctgtct cccgctcagt 6720 gtctggctct ctccggtgcc ccaccctcca agtgtgtgtc tttcggtatt tactcatgta 6780 aaagtatcta aataacgcgg atcctcagtg cg 6812 //