ID JQ700308; SV 2; linear; genomic RNA; STD; VRL; 5843 BP. XX AC JQ700308; XX DT 03-SEP-2012 (Rel. 114, Created) DT 29-APR-2015 (Rel. 124, Last updated, Version 2) XX DE Suakwa aphid-borne yellows virus isolate SABYV-TW19, complete genome. XX KW . XX OS Suakwa aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5843 RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.; RT "Full length genome analysis of four polerovirus isolates infecting RT cucurbits in Taiwan determined from total RNA extracted from field RT samples"; RL Unpublished. XX RN [2] RP 1-5843 RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.; RT ; RL Submitted (24-FEB-2012) to the INSDC. RL Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan RL 74199, Taiwan XX RN [3] RC Sequence update by submitter RP 1-5843 RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.; RT ; RL Submitted (28-APR-2015) to the INSDC. RL Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan RL 74199, Taiwan XX DR MD5; 5e9ddc1d74bb3cfe4f9db242f20f9b3b. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4966459; 27469955. XX CC On Apr 28, 2015 this sequence version replaced gi:392328743. XX FH Key Location/Qualifiers FH FT source 1..5843 FT /organism="Suakwa aphid-borne yellows virus" FT /host="Luffa cylindrica (Suakwa vegetable sponge)" FT /isolate="SABYV-TW19" FT /mol_type="genomic RNA" FT /country="Taiwan:Kaohsiung County" FT /collection_date="29-Oct-2008" FT /db_xref="taxon:646010" FT 5'UTR 1..47 FT CDS 48..857 FT /codon_start=1 FT /product="P0" FT /db_xref="UniProtKB/TrEMBL:J7FCG6" FT /protein_id="AFM68942.1" FT /translation="MNLRINTDSSIRLTFESDSFVERLSCFVYFLINCEEYFSEAALLN FT TTFNEEYAIRCVIFLLPLCLNPLLARSRARKRAGALPRTYLQPVLRWAVRTGTSISYGL FT ERNQREFWFLLRGAGRARLEPINSRELLHGYIDLTIEQNPLGFQECCIRGPRYISCVLG FT VMQRQHSSIRVPRLQSLARGDNNAVDLCDLGHSLRPYLGFAEYLPTHAYLDFPVLLHKF FT IGEGVQDPLWDCLPCIFTDAIFAFITGETHPDLDFGSALRKLFWEEA" FT CDS join(193..1725,1725..3440) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /db_xref="GOA:J7FCV4" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:J7FCV4" FT /protein_id="AFM68944.1" FT /translation="MKNMQFVVLFFFCLSASTLCWPEVEPESAQALYPGPTYNLSYDGL FT SVLELPFHTDWKEIKENFGFFCEEPGELDLNQLIAESSYTDILTSLSNKILLDFKSVVS FT VALDTFLVFWALCKGSIQAYAFRAFKAWLEVIITLWISVISAILSGLTWALLNIFPHTL FT TLIFLFFFTNLLVKGFRILCGTACLAFLRMLFSPLLPVKRILTWTLARLLGNSFGRKLE FT KATEGWKSFEIKMAPPSSSALPVRNRITKEHAGYCGFVQTHMKNADGTYVEAFITARHV FT IDDDLGEIHSPKTKNFIACADLEVLGDWESIDLILLRAPKHARSYLGCKPASMVAIDRL FT ATCDASTFHLIDGEWHMSNARLVGDVKNGVAVLSNSVCGHSGSPFYNGKHILGVLYGGG FT SYFENFNVMNPIPAIPGLTTPERRLETTAPRGKIFNNEDFFQKLEEEYLQMKNFKSKTG FT VDWADLPSDDEMDFQDALPSFRKAEKAEPSHPVANTREPAVVVGDIRCNISGNRREQGR FT LLQQRPHVRCCEEPRESCGPDGGQCGHPGDPTRGSSDSCCPALRQPEKDESRTVPAWES FT RGTEADNFRRYFQNEYDWEVRAPAPQVPGFRHCGTLPRYYFSRQKGETEWGKTLTRDNP FT SLGEATAGYGWPEFGPGAELKSLKLQAARWRERASSAKVPYPSERERVIRIATERYSKV FT KSVAPACSRSGELKWEGLVEDLKDCLPSLSLEAGVGVPYIAYGRPTLGSWVNDQALLPI FT LSRLVFDRLKKMSETRFDDMTPEELVQNGLCDPIRTFIKGEPHKSSKLKEGRYRLIMSV FT SIVDQLVARVLFQNQNKSEIALWRAIPSKPGLGLSTDEQVLDFVHNLAENTEYRESVED FT FIKHWHRTVVPTDCSGFDWSVSSWMLEDDMEVRNNLTINNNELTRRLRACWLKCISNSV FT ICLSDGTLLAQEFPGIQKSGSYNTSSTNSRVRVMLSIYAGASWAIAMGDDALESADTII FT PLYEQYGLKVEVSDKLEFCSHEFKSSSLAIPTNIGKMLYKLIHGYEIFPGMSSIQVTIN FT YLTACYSVLNELRHVPEAASLVAQCLAPVEAQKV" FT CDS 193..2157 FT /codon_start=1 FT /product="P1" FT /db_xref="GOA:J7FDP3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:J7FDP3" FT /protein_id="AFM68943.1" FT /translation="MKNMQFVVLFFFCLSASTLCWPEVEPESAQALYPGPTYNLSYDGL FT SVLELPFHTDWKEIKENFGFFCEEPGELDLNQLIAESSYTDILTSLSNKILLDFKSVVS FT VALDTFLVFWALCKGSIQAYAFRAFKAWLEVIITLWISVISAILSGLTWALLNIFPHTL FT TLIFLFFFTNLLVKGFRILCGTACLAFLRMLFSPLLPVKRILTWTLARLLGNSFGRKLE FT KATEGWKSFEIKMAPPSSSALPVRNRITKEHAGYCGFVQTHMKNADGTYVEAFITARHV FT IDDDLGEIHSPKTKNFIACADLEVLGDWESIDLILLRAPKHARSYLGCKPASMVAIDRL FT ATCDASTFHLIDGEWHMSNARLVGDVKNGVAVLSNSVCGHSGSPFYNGKHILGVLYGGG FT SYFENFNVMNPIPAIPGLTTPERRLETTAPRGKIFNNEDFFQKLEEEYLQMKNFKSKTG FT VDWADLPSDDEMDFQDALPSFRKAEKAEPSHPVANTREPAVVVGDIRCNISGNAESRVD FT CYNNAPTFDAAKSLEKVVDQMVANVDTLAIQHEAAQILAARLFDNQKKMKAEQYRRGSR FT GAPKPTISEGTSKTNTTGKYVPLHRKSPGSVTAEPYRDTTSPARRERQNGARRSPGTIP FT HWVRRQPATAGRNSAQGPN" FT CDS 3639..5636 FT /codon_start=1 FT /transl_except=(pos:4239..4241,aa:OTHER) FT /product="P3-P5 readthrough protein" FT /db_xref="GOA:J7FCG7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:J7FCG7" FT /protein_id="AFM68947.1" FT /translation="MNTVVVRNRNGMGRRRRNSRRNAKGNRVVVVQAPGAPQRGRRRRR FT NGRRPSRGGRARGTSQGETFVFSKDNLTGSSSGAITFGPSLSDSPAFSSGILKAYHEYK FT ISMVKLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKSGSRTWSAKFINGME FT WHDATEDQFRILYKGNGSSSTAGSFRITIRCQVQNPKXVDGASPPPAPTPPPPPPGPPP FT EPTPCKGARFWGYEGNPQSKIQTAQNYRNIDFRPLNYVSMYRWEDEKWDKVELQAGYSR FT NDRRCMETYFEVPASKGKFHVYLEADGEFVVKHIGGDLDGSWLGNIAYDVSQRGWNVGN FT HKGCNIKNYQSNTSFVAGHPDATMNGKQFDKARAVEVDWYASFELECDDDGGSWRIYPP FT PIQKDSSYNYTVSYGNYTDKYCEWGAVSISIDEDNPTGRAPQSIKPRKGVMTWSMPEPE FT RQLAEQTPAEEPSETSGLGGPPLIKFGEDSTGSQGDHITKSQIPEASTPMHQIVRDLGG FT LTDSTNRAPRGVAEWIQVDADPVNEEEYSSDGMECASPPSPTRTSILTSIPNTETVLGL FT PGVYPSDREVASSLLNDKRVKSFGKHLLPSLGGSRTSALSGGTLRQKHSDLIKSKMTTA FT EQAQAQKIRRELGKGAQTRYIESLNLHDRV" FT CDS 3639..4241 FT /codon_start=1 FT /product="P3" FT /db_xref="GOA:J7FE76" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:J7FE76" FT /protein_id="AFM68945.1" FT /translation="MNTVVVRNRNGMGRRRRNSRRNAKGNRVVVVQAPGAPQRGRRRRR FT NGRRPSRGGRARGTSQGETFVFSKDNLTGSSSGAITFGPSLSDSPAFSSGILKAYHEYK FT ISMVKLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKSGSRTWSAKFINGME FT WHDATEDQFRILYKGNGSSSTAGSFRITIRCQVQNPK" FT CDS 3667..4245 FT /codon_start=1 FT /product="P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:J7FDA2" FT /protein_id="AFM68946.1" FT /translation="MAWEEGEGIAGAMQKATAWLWSKPLGLHSAEDDDDETVDALLEEA FT ELEEQAKAKHSYSAKTISRAVPLEQSRSGRLYQTAQHSALEYSRPTMSIKSQWLSWSSS FT PRPLPRPPVPSLMSWTPIANLAPSNPRLINSVSQRVDHEHGALSSLTGWNGTTPQRISS FT ESFTKETEVPQRRALLESPSGVKSRTRNR" FT 3'UTR 5637..5843 XX SQ Sequence 5843 BP; 1562 A; 1461 C; 1437 G; 1383 T; 0 other; acaaaaggtc aggaagaaaa cacaccgtcg agttttccgg gtgttttatg aatctgcgta 60 taaacactga ttcatctatt cgattgacat tcgaatctga ctcttttgtt gagaggctgt 120 cctgcttcgt gtactttttg atcaactgcg aagaatattt ctccgaagca gcacttttaa 180 acacaacatt caatgaagaa tatgcaattc gttgtgttat ttttcttttg cctctctgcc 240 tcaaccctct gctggcccga agtcgagcca gaaagcgcgc aggcgcttta cccaggacct 300 acctacaacc tgtcttacga tgggctgtcc gtactggaac ttccatttca tacggactgg 360 aaagaaatca aagagaattt tggtttcttt tgcgaggagc cgggcgagct cgacttgaac 420 caattaatag cagagagctc ctacacggat atattgacct cactatcgaa caaaatcctc 480 ttggatttca agagtgttgt atccgtggcc ctagatacat ttcttgtgtt ctgggcgtta 540 tgcaaaggca gcattcaagc atacgcgttc cgcgccttca aagcctggct cgaggtgata 600 ataacgctgt ggatctctgt gatctcggcc attctctccg gccttacttg ggctttgctg 660 aatatcttcc cacacacgct taccttgatt ttcctgttct tcttcacaaa tttattggtg 720 aaggggttca ggatcctttg tgggactgct tgccttgcat ttttacggat gctattttcg 780 cctttattac cggtgaaacg catcctgacc tggactttgg ctcggctctt aggaaactct 840 tttgggagga agcttgaaaa agccactgaa gggtggaaaa gctttgaaat taaaatggct 900 cccccttcct cctcagccct gcccgtccgg aatcgcatta caaaggagca tgccggttac 960 tgcgggttcg ttcaaaccca catgaaaaac gcagacggca catatgttga ggctttcatc 1020 accgcaaggc acgtcattga tgatgacctt ggtgagatcc attctcccaa gactaagaac 1080 tttattgcct gcgctgattt agaagtgctt ggggattggg aatctattga cctaatcctg 1140 ttgcgagccc ccaagcacgc gcggtcttac ctcggctgta agcccgcatc aatggtggcg 1200 attgatcgtt tggccacctg tgacgcatca acatttcatt taatagacgg cgaatggcac 1260 atgtcaaatg cccgccttgt tggtgacgtc aaaaacggag ttgcagtcct gagcaactcc 1320 gtttgcggac acagtggatc ccccttttac aatggaaagc atatcctggg ggtcctctat 1380 ggtggaggtt cctattttga aaactttaat gtgatgaacc ccatccccgc aattcccgga 1440 ttaacaaccc cggagcgacg tttggaaaca accgctccac gcgggaaaat cttcaacaat 1500 gaagatttct tccaaaaact agaggaagaa tacctgcaaa tgaaaaactt taaatcaaag 1560 acaggggttg attgggcgga tttaccgtcc gatgatgaga tggactttca agatgcgttg 1620 ccttccttcc gaaaagcgga aaaggctgaa ccatctcatc cagttgcgaa cacccgcgaa 1680 ccggccgtgg ttgttggaga tataagatgc aacatttcgg gaaacgccga gagcagggtc 1740 gactgctaca acaacgcccc cacgttcgat gctgcgaaga gcctcgagaa agttgtggac 1800 cagatggtgg ccaatgtgga caccctggcg atccaacacg aggcagctca gattcttgct 1860 gcccggctct tcgacaacca gaaaaagatg aaagccgaac agtaccggcg tgggagtcgc 1920 ggggcaccga agccgacaat ttcagaaggt acttccaaaa cgaatacgac tgggaagtac 1980 gtgcccctgc accgcaagtc cccgggttcc gtcactgcgg aaccttaccg agatactact 2040 tctcccgcca gaagggagag acagaatggg gcaagacgct cacccgggac aatccctcac 2100 tgggtgaggc gacagccggc tacggctggc cggaattcgg cccaggggcc gaattaaaaa 2160 gcttgaaact tcaagccgct cgctggcgag aacgcgcctc gtcagccaaa gttccttatc 2220 cgagcgagag ggagcgcgtc attagaatag caacggagcg ctattctaaa gttaaatctg 2280 tagctccggc ttgctctcgc tctggcgagc tcaaatggga aggtctcgtt gaagatctga 2340 aggattgcct cccttccctt tctttggaag caggtgttgg agtgccctac atcgcatacg 2400 gtaggcccac cctgggttcc tgggtcaatg atcaggctct gttgccgatc ctctcgcgac 2460 ttgttttcga ccgactaaag aagatgtcgg aaacgaggtt cgatgatatg accccagaag 2520 agctcgttca gaatggactg tgcgacccta tcaggacgtt tatcaagggc gaaccgcaca 2580 agtcgagcaa gctcaaagaa ggccgctacc gcctcattat gtctgtgtca atcgttgacc 2640 aattggtagc ccgggttttg tttcaaaatc aaaacaagag tgagatcgct ttgtggagag 2700 cgatcccctc caaacccggt ttgggattat ccaccgatga acaggtcctg gacttcgttc 2760 ataatctcgc ggaaaatact gaataccgcg agtctgttga ggactttatt aagcactggc 2820 accgaacagt tgtcccaaca gattgctccg gctttgactg gagcgtctca tcgtggatgc 2880 tcgaggatga tatggaggtc aggaacaacc tcaccatcaa caacaacgag ctcaccaggc 2940 gccttcgcgc atgctggttg aagtgcatat cgaactctgt gatatgcctg tccgatggga 3000 ctttgctagc ccaggagttc cccggtatac agaaatcggg ctcctataac accagctcca 3060 ctaactcaag agttagagtg atgctctcta tttatgctgg tgcgtcctgg gccatagcta 3120 tgggcgatga cgcccttgag tccgctgata cgataatccc attatatgag caatacggac 3180 tcaaagtcga ggtctctgac aaactggaat tttgttctca tgagttcaaa agttcgagcc 3240 tcgccatccc cacgaatata gggaaaatgc tttacaagct catacatgga tatgagatct 3300 tcccggggat gtccagcatt caggtcacaa tcaattattt gactgcctgt tactcagttc 3360 taaatgaact gcgtcatgta cctgaagctg cttcactcgt cgcgcagtgc ctcgctccag 3420 tcgaggcaca aaaagtttaa acaaaagcgc gcactcataa ctagccggaa atacgttgtt 3480 gcaattgccg gaagttaaag tcaactacaa cataggccaa ccagatttca agtttttagc 3540 aggatttact tcgggcttcc tgatagctgt accaatttca gcacttggcc tatatttgat 3600 ctacctaaag atttctaaac acgtgcaatc gatagttaat gaatacggtc gtggttagaa 3660 atcgaaatgg catgggaaga aggagaagga atagccggcg caatgcaaaa ggcaaccgcg 3720 tggttgtggt ccaagcccct ggggctccac agcgcggaag acgacgacga cgaaacggtc 3780 gacgcccttc tcgaggaggc agagctagag gaacaagcca aggcgaaaca ttcgtattca 3840 gcaaagacaa tctcacgggc agttcctctg gagcaatcac gttcgggccg tctttatcag 3900 acagcccagc attcagctct ggaatactca aggcctacca tgagtataaa atctcaatgg 3960 ttaagttgga gttcatctcc gaggcctctt ccacgtcctc cggttccatc tcttatgagt 4020 tggaccccca ttgcaaactt agctccctcc aatccacggt taataaattc ggtatcacaa 4080 agagtggatc acgaacatgg agcgctaagt tcattaacgg gatggaatgg cacgacgcca 4140 cagaggatca gttccgaatc ctttacaaag gaaacggaag ttcctcaacg gcgggctctt 4200 ttagaatcac catcaggtgt caagtccaga acccgaaata ggtagacggc gcctcccccc 4260 ccccagcacc aacaccacct ccacccccac ctgggccccc ccctgagcca actccctgta 4320 aaggagctcg gttttgggga tatgagggta acccccagag caagatacaa acggcacaga 4380 attacaggaa tatcgatttc cggccgttga attatgtatc catgtatcgg tgggaagacg 4440 agaaatggga caaagttgaa ctccaagctg gttactccag gaatgacaga cgatgtatgg 4500 aaacatactt cgaagtacca gcgagtaaag gtaaatttca tgtttacctt gaagccgacg 4560 gtgagttcgt cgtcaaacac attggcggcg atcttgatgg cagttggctt ggaaatatag 4620 cttatgatgt gtcccagcga ggttggaatg ttggtaatca caaaggatgc aatatcaaga 4680 attatcaatc aaacacatcc tttgttgctg gccaccccga cgcgactatg aatggcaaac 4740 aatttgacaa agcgcgggca gtggaagtag attggtatgc ctcatttgaa ttagaatgtg 4800 atgatgatgg aggcagctgg cggatttatc ccccccccat ccaaaaagac agttcgtata 4860 attacaccgt ttcatacggt aattatactg ataaatactg cgaatgggga gctgtttcaa 4920 tttccatcga tgaggacaac cctacaggga gggcaccaca gagtataaag ccacgtaagg 4980 gggttatgac gtggtcaatg cccgagccag aaagacaact ggctgaacaa actccggccg 5040 aagagccgtc cgagacatct gggctcggtg gtccgcctct gattaaattc ggtgaagatt 5100 caacaggcag ccagggcgac cacataacaa aatcccaaat tcccgaggca tctacgccta 5160 tgcaccaaat tgtacgggat ttgggtgggc tcacagactc cacaaataga gccccgcgag 5220 gagtggctga gtggatccaa gtagatgcgg atcctgttaa tgaagaagaa tattcctctg 5280 atggaatgga atgcgccagc cctccttcgc caacccggac ttccatcctc acttcaattc 5340 caaacactga gacagtgcta ggtttgccag gtgtttaccc cagcgatcgc gaagttgcgt 5400 ctagcttgtt aaatgacaaa agggtaaaat ccttcggcaa acacctcctc cctagcttgg 5460 ggggatcgcg cacctcagct ttaagtgggg gaactctccg tcaaaagcat tcagacctta 5520 taaaatcaaa gatgacgacg gcagagcagg ctcaggccca gaagatccgg agggaactcg 5580 gtaaaggtgc gcaaactcgt tacatcgagt ctttaaattt gcatgaccga gtataaagaa 5640 ccgctttgtg aaggcgtgcg agacttcacc aggactgcga gagcctgaac ccaatctcga 5700 ttttccgtac cttcttagct ctcgggaggt atgagttcgc catgagagaa cgaaagcgaa 5760 agctgtaggc agaaagtaag aatccaagag ccagcggaca aaatccgatg gcaaggtgag 5820 agttgactct tgggttcttc tgt 5843 //