ID JQ700307; SV 1; linear; genomic RNA; STD; VRL; 5676 BP. XX AC JQ700307; XX DT 03-SEP-2012 (Rel. 114, Created) DT 03-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Melon aphid-borne yellows virus isolate MABYV-TW1, complete genome. XX KW . XX OS Melon aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5676 RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.; RT "Full length genome analysis of four polerovirus isolates infecting RT cucurbits in Taiwan determined from total RNA extracted from field RT samples"; RL Unpublished. XX RN [2] RP 1-5676 RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.; RT ; RL Submitted (24-FEB-2012) to the INSDC. RL Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan RL 74199, Taiwan XX DR MD5; 57a38c7e37cf0522c1928299171fd56f. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5676 FT /organism="Melon aphid-borne yellows virus" FT /host="Citrullus lanatus (watermelon)" FT /isolate="MABYV-TW1" FT /mol_type="genomic RNA" FT /country="Taiwan:Yunlin County" FT /collection_date="Nov-2000" FT /db_xref="taxon:471717" FT 5'UTR 1..20 FT CDS 21..746 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:J7FDA0" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:J7FDA0" FT /protein_id="AFM68936.1" FT /translation="MQIETVKQQLVFRPTRRASTDDRRLSISSFLVDYVFLYQFTRQYG FT ENFLRLFLARLPLLISEQLSGDYVYTPGVTRRIMVARFHRHCGAPLPSSSAVDLRLPAT FT KDVARFFLARHYSRVMGEGLQRRQTDLFGGYADFRKFLTVWCSSTSRRLREPTPHAFPI FT DRIFVELSNLGIGLRGMALTTGVYYRDALARVALHVHRIYGEDGGLDFWRLANFPSKSW FT PFSSERYLAGSVVQRELQS" FT CDS join(151..1482,1482..3320) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /db_xref="GOA:J7FDP2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:J7FDP2" FT /protein_id="AFM68938.1" FT /translation="MVKIFYAFFLLACLCSSVSSYQGTMFTPLESPDASWWLDSTATAV FT LPSPPQAQLIYDCPPQKMLRDFSSRDIIRELWERGCNDARQTSLEVMQIFENFLLSGAR FT RLRAGLGSLLHTLFQLIAYLWSSLIWASACAVWHLLREYTIEMLSLASLYMCTVYMVKT FT AAWIFGDLPIFLLKAGLSAASGISRVLWFKGNYKAEKSVEGFLSFKIPQTPPGKSVLQV FT QHQDGSHAGYATCVALFNGSTGLITAHHVITPGAKIVSTRNGSKIPASEFQIKLENSKR FT DLILMTGPPNWEGALACKASQIQTANNLCKSKATFFAWNGEDWESSNAEIVGVSACRNY FT VSVLSNTNPGHSGTPYFNGKTLLGVHIGGANDENANYLAPIPAVPGLTSPKYVFETTAP FT QGRLFNDEEIAALIEEFSMSEVASIMRARKGKQVYVEEAAPKQGNRRRGGDRANNRPTL FT SHPGQRRKQYKRNINNCCSFFTEGTLAPRTIASHEHEPWNDEKPRCFCAIPGHDCFFRN FT FIGNQERNTGENKPPVNREAGCGSLDEEGNEESRKEATKRQAEDFQRFFDSQYTWEPGS FT GKEAPGFKQVGRLPEFYHPKQKTGSKWGAKICRQHPEMDAYTQGFGWPQFGAQAELKSL FT RLQAARWLERAQSVKIPSSEERERVIRKCCEAYKNAKTIGPNATRGDSLSWEGFLEDFK FT QAVFSLEFDAGIGVPYIAYGRPTHRGWVEDPKLLPILARLTFNRLQKMLEVRFEHLSPA FT ELVQAGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLIDQLVARVLFQNQNKREITLW FT RAVPSKPGFGLSTDEQVVEFMEILSAQVGVAPKELIGNWQHHLIATDCSGFDWSVSDWL FT LEDDMEVRNRLTLDINETTKRLRSAWLKCISNSVLSLSDGTLLSQQVPGVQKSGSYNTS FT SSNSRIRVMAAYHCGAEWAMAMGDDALESVGSNLAKYAELGFKVEVSSKLEFCSHIFER FT EDLAIPVNKAKMIYKLIHGYEPECGNAEVLINYLTACFAVLNELRSDPQLVSTLHQWLV FT LPVQPQKI" FT CDS 151..2046 FT /codon_start=1 FT /product="P1" FT /db_xref="GOA:J7FCG5" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:J7FCG5" FT /protein_id="AFM68937.1" FT /translation="MVKIFYAFFLLACLCSSVSSYQGTMFTPLESPDASWWLDSTATAV FT LPSPPQAQLIYDCPPQKMLRDFSSRDIIRELWERGCNDARQTSLEVMQIFENFLLSGAR FT RLRAGLGSLLHTLFQLIAYLWSSLIWASACAVWHLLREYTIEMLSLASLYMCTVYMVKT FT AAWIFGDLPIFLLKAGLSAASGISRVLWFKGNYKAEKSVEGFLSFKIPQTPPGKSVLQV FT QHQDGSHAGYATCVALFNGSTGLITAHHVITPGAKIVSTRNGSKIPASEFQIKLENSKR FT DLILMTGPPNWEGALACKASQIQTANNLCKSKATFFAWNGEDWESSNAEIVGVSACRNY FT VSVLSNTNPGHSGTPYFNGKTLLGVHIGGANDENANYLAPIPAVPGLTSPKYVFETTAP FT QGRLFNDEEIAALIEEFSMSEVASIMRARKGKQVYVEEAAPKQGNDDAAATAQTTGPHS FT ATRGNGESSTKEISTTAAPSSPKEPLPQEPSRATSTNRGMMKSRDVSVQSPDTTASSET FT LSEIKNAILERINLQSIEKQVVEALTKKATRNRGRRQQKDKPKTSSDSSTPNTHGSREV FT EKKPLDSNRSAASPSFTTPSRRRGRNGGPRYADSTQKWMPTPRASGGRSSEPRPN" FT CDS 3516..5510 FT /codon_start=1 FT /transl_except=(pos:4113..4115,aa:OTHER) FT /product="P3-P5 readthrough protein" FT /db_xref="GOA:J7FDA1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:J7FDA1" FT /protein_id="AFM68941.1" FT /translation="MNTVAARNQNGMGRRRRNRRRTSKSNRVVVVQTTGQPQRGRRRRR FT NPRRSPRGGRAGGRPGETFVFSKDNLTGSSSGAITFGPSLSESPAFSSGILKAYHEYKI FT SMVKLEFISEASSTSSGSISYELDPHCKLNALQSTVNKFGITKSGSRTWSAKLINGLEW FT HDATEDQFRILYKGNGSSSTAGSFRITIKCQVQNPKXVEGTSPPPAPTPTPPPPAPSPE FT PTPCKGARFWGYEGNPQSKIQTAENNRNIDSRPLNYVSMYRWEDEKWDQVNLQAGYSRN FT DRRCMETYFVIPANKGKFHVYLEADGEFVVKHIGGDLDGSWLGNIAYDVSQRGWNIGNY FT KGCSIKNYQSKTTFVAGHPDASMNGKNFDAARAVEVDWFASFELECDDDEGSWRIYPPP FT IQKDSSYNYTVSYGNYTEKYCEWGAVSISIDEDNATGRVPQRIKPRKGVMTWSTPEPER FT QPAEQTPVQEPSETSGLDAPPTTKQEDETTDDLGGKFKEPQIPEFSTPMHMLARDLGGL FT TESSSRAPEGVASWVQLEADPVNESEYSSDNETIASPPTTTVSSPFTSIPNTERVLQMP FT GVYQGDRQIASSVLDEHRKRSFAKRLLPSLGGSRASALSGGTLRQKHSDLIKQYMTAAE FT HAEAQRIRNQLGKGAQTRYIESLNLHDRV" FT CDS 3516..4115 FT /codon_start=1 FT /product="P3" FT /db_xref="GOA:B3FGT6" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B3FGT6" FT /protein_id="AFM68939.1" FT /translation="MNTVAARNQNGMGRRRRNRRRTSKSNRVVVVQTTGQPQRGRRRRR FT NPRRSPRGGRAGGRPGETFVFSKDNLTGSSSGAITFGPSLSESPAFSSGILKAYHEYKI FT SMVKLEFISEASSTSSGSISYELDPHCKLNALQSTVNKFGITKSGSRTWSAKLINGLEW FT HDATEDQFRILYKGNGSSSTAGSFRITIKCQVQNPK" FT CDS 3544..4119 FT /codon_start=1 FT /product="P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:J7FE74" FT /protein_id="AFM68940.1" FT /translation="MAWEGGDGTVDALQRVTAWLWSKPLANHNAEDDDDEIQDVLLEEA FT ELEDAQVKHLYSAKTISRAVPPEQSLSGRLYQRAQHSALEYSRPTMSIKSQWSSWSSSP FT RPLPPPQVPSLMSWTPTASLTPSNPRLINSESRRVDLEHGARSSLTGWNGTTPRKINSA FT SYTKETGALQRRDRSGSPSSARSRTRNR" FT 3'UTR 5511..5676 XX SQ Sequence 5676 BP; 1570 A; 1436 C; 1431 G; 1239 T; 0 other; acaaaagata caagcggggg atgcaaattg agactgtaaa acaacaactt gttttcagac 60 caacccgtcg agcaagcaca gacgatcgca gactatcaat atcttcattt ttagtcgatt 120 acgtcttttt gtatcaattc acaaggcaat atggtgaaaa ttttctacgc ctttttcttg 180 ctcgcttgcc tctgctcatc agtgagcagc tatcagggga ctatgtttac acccctggag 240 tcaccagacg catcatggtg gctcgattcc accgccactg cggtgctccc ctcccctcct 300 caagcgcagt tgatttacga ctgcccgcca caaaagatgt tgcgcgattt ttcctcgcgc 360 gacattattc gagagttatg ggagaggggc tgcaacgacg ccagacagac ctctttggag 420 gttatgcaga ttttcgaaaa tttcttactg tctggtgctc gtcgacttcg cgcaggctta 480 gggagcctac tccacacgct tttccaattg atcgcatatt tgtggagctc tctaatctgg 540 gcatcggcct gcgcggtatg gcacttacta cgggagtata ctatcgagat gctctcgctc 600 gcgtcgctct acatgtgcac cgtatatatg gtgaagacgg cggcttggat ttttggcgac 660 ttgccaattt tccttctaaa agctggcctt tcagcagcga gcggtatctc gcgggttctg 720 tggttcaaag ggaattacaa agctgagaaa tccgtggaag gatttctctc attcaaaatc 780 ccacaaaccc ctcccggtaa aagcgtgttg caagtgcagc accaggatgg atctcacgca 840 ggttatgcaa cctgcgttgc acttttcaat ggatcaacag ggctcataac agcccaccat 900 gtgatcactc ctggcgctaa aatagtctcc actcggaatg gctctaagat cccagcctcc 960 gagtttcaaa ttaaattaga aaattccaag agagacttga tactgatgac cggcccacca 1020 aattgggagg gggccttggc ttgcaaagcg tcacaaatcc agactgctaa taatttgtgc 1080 aagtccaagg cgaccttttt cgcctggaat ggtgaagatt gggagtcatc aaatgctgaa 1140 attgtcgggg tttcagcgtg tagaaattat gtatcagtgc ttagcaacac gaatcccggc 1200 cacagcggca ccccatactt caatggaaaa acattgttgg gtgtccacat tgggggcgca 1260 aatgatgaaa atgccaacta tttagccccc atccctgctg tgcctggtct cacgtcaccg 1320 aaatacgttt tcgagaccac agcaccccaa ggccgcttgt ttaacgatga agaaattgcg 1380 gcgttaatag aggagttcag catgtctgag gtcgcctcaa tcatgagggc ccggaaaggt 1440 aagcaagtat atgttgaaga agctgctcct aagcagggaa acgacgacgc ggcggcgacc 1500 gcgcaaacaa ccggcccaca ctcagccacc cggggcaacg gagaaagcag tacaaaagaa 1560 atatcaacaa ctgctgctcc ttcttcaccg aaggaaccct tgccccaaga accatcgcga 1620 gccacgagca cgaaccgtgg aatgatgaaa agccgcgatg tttctgtgca atccccggac 1680 acgactgctt cttccgaaac tttatcggaa atcaagaacg caatactgga gagaataaac 1740 ctccagtcaa tagagaagca ggttgtggaa gccttgacga agaaggcaac gaggaatcga 1800 ggaaggaggc aacaaaaaga caagccgaag acttccagcg attcttcgac tcccaataca 1860 catgggagcc gggaagtgga aaagaagccc ctggattcaa acaggtcggc cgcctccccg 1920 agttttacca ccccaagcag aagacggggt cgaaatgggg ggccaagata tgccgacagc 1980 acccagaaat ggatgcctac acccagggct tcgggtggcc gcagttcgga gcccaggccg 2040 aactgaaatc cttgcggcta caggccgcca ggtggctgga gcgcgcccag tctgttaaaa 2100 tcccctcgtc tgaggagcgg gagcgcgtga tcaggaaatg ctgtgaggcc tacaaaaatg 2160 ccaaaactat agggcccaac gcaacaagag gagacagctt atcctgggaa ggattccttg 2220 aagattttaa gcaagctgtc ttctcgctcg aatttgatgc aggcatcggc gtaccataca 2280 ttgcttatgg aaggccaacc caccgagggt gggttgaaga tccaaaatta ttgccgatct 2340 tagctcgcct gacctttaac cggctacaga agatgttaga ggttaggttc gagcatctaa 2400 gccctgcgga gcttgtgcag gcgggtctct gtgacccgat acgtgtgttt gttaaaggtg 2460 aaccgcacaa gcagagtaaa ttagatgaag gccgctaccg cctcatcatg agcgtttcct 2520 tgatagatca attggtagcc cgggttttat tccagaatca gaataaaaga gaaatcactc 2580 tgtggagggc agtaccctct aaacccggtt ttggcttgtc tacggatgag caagtcgtgg 2640 agttcatgga aatactctcc gcgcaggtgg gggttgcacc caaagaatta ataggcaatt 2700 ggcaacacca ccttattgcg actgactgct ccggctttga ctggagcgtt tcggactggc 2760 tccttgaaga tgatatggaa gtccgaaacc gcctgacgct ggacattaat gagaccacca 2820 agcgcttaag atcagcttgg ttgaagtgca tctcgaatag cgtcctcagc ctctccgatg 2880 ggaccctcct gtcacaacag gtccccggag tacagaaatc tggcagctat aacacctcat 2940 cctccaattc taggattcga gtgatggctg catatcattg cggggctgag tgggcaatgg 3000 cgatgggcga tgacgccctt gagtcagtcg gatcaaacct agcgaaatac gctgagctag 3060 gttttaaagt cgaggtttcc tcaaaactgg aattctgctc acatatcttt gaacgtgagg 3120 acctcgccat tccggtcaat aaagccaaaa tgatatataa gttgatacat ggctatgagc 3180 cggaatgtgg caatgctgag gtcttgatta actatctgac cgcctgtttc gcagttctca 3240 acgaattgcg gtcagatcct cagcttgtct cgactctcca tcagtggctg gttcttccag 3300 tgcagccaca aaagatataa ggggagtata aagaacacta gccggaaata cgttgttgca 3360 attgccggaa gtttaagcca actacaaaat aggccaagcg gatttcagat tcgtagcagg 3420 attcacatcg ggcttcctgg cagctatacc actttgcgca ctaggcctat acttaatcta 3480 cctaaagatt tcagcccacg ttcgatcaat tgttaatgaa tacggtcgcg gctagaaatc 3540 aaaatggcat gggaaggagg agacggaacc gtcgacgcac ttcaaagagt aaccgcgtgg 3600 ttgtggtcca aaccactggc caaccacaac gcggaagacg acgacgacga aatccaagac 3660 gttctcctcg aggaggcaga gctggaggac gcccaggtga aacatttgta ttcagcaaag 3720 acaatctcac gggcagttcc tccggagcaa tcactttcgg gccgtctcta tcagagagcc 3780 cagcattcag ctctggaata ctcaaggcct accatgagta taaaatctca atggtcaagt 3840 tggagttcat ctccgaggcc tcttccacct cctcaggttc catctcttat gagttggacc 3900 cccactgcaa gcttaacgcc ctccaatcca cggttaataa attcggaatc acgaagagtg 3960 gatctagaac atggagcgcg aagctcatta acgggctgga atggcacgac gccacggaag 4020 atcaattccg catcctatac aaaggaaacg ggagctcttc aacggcggga tcgttcagga 4080 tcaccatcaa gtgccaggtc cagaacccga aataggtaga aggcacctcc ccccccccag 4140 caccaacacc aacccccccc ccaccggccc cctcacccga gcccacacct tgtaaaggcg 4200 ctcgtttctg gggctatgag ggcaacccac aaagcaagat acaaacggca gaaaataata 4260 gaaacatcga ttcaaggccg ttgaattatg tatccatgta ccggtgggaa gatgagaaat 4320 gggatcaagt taatctgcaa gctggctact caagaaatga cagacgttgt atggaaacat 4380 acttcgtgat accggcgaac aagggaaagt ttcacgtgta ccttgaggcc gatggagaat 4440 tcgtcgtaaa acacataggc ggcgatctcg atggtagctg gcttggaaac atcgcgtatg 4500 atgtatccca gcgaggttgg aatattggga attacaaagg ttgcagcata aagaactatc 4560 agtcgaaaac gacctttgta gctggacacc ctgacgcatc catgaatgga aagaactttg 4620 atgcggctag ggcagtggaa gttgattggt tcgcctcatt tgaactagaa tgtgatgatg 4680 acgaaggcag ttggaggatc tatcctcccc ccatacagaa ggacagttcg tataattaca 4740 ctgtctcgta cggaaactac acagagaaat actgtgaatg gggagccgtt tccatctcta 4800 ttgatgagga caacgccaca gggagggtgc cacaaagaat taaaccacgt aagggggtaa 4860 tgacgtggtc aacgcccgag ccggaaagac aaccggctga acaaactccg gttcaagaac 4920 cgtccgagac atctgggctc gatgccccgc ctacgacaaa acaagaagac gaaacaaccg 4980 acgatctagg cgggaagttt aaagaacccc aaattcctga gttttcgacg ccaatgcata 5040 tgctagcgcg ggatttgggc gggctaacgg aatcttcttc cagagcgccc gagggagtgg 5100 ccagctgggt ccagctagaa gcggatccag taaatgaaag tgaatattcc tcagataatg 5160 agacgatcgc gagccctccc actacaaccg tttcctctcc cttcacttca attccgaaca 5220 cggaaagggt gcttcaaatg cccggagtgt accaaggtga tcgacagatc gcctcaagcg 5280 tgttagatga acaccgcaaa aggtccttcg caaagcgcct cctcccaagc ttgggaggat 5340 ctagagcttc agcccttagt ggagggactc tccgccaaaa gcattcagat ttgattaagc 5400 aatatatgac ggcggcagag catgcggaag cgcagaggat ccggaatcaa ctcggtaaag 5460 gtgctcaaac tcgatacatt gagtctttaa acttgcacga ccgagtgtaa agaaccgctt 5520 tgtggagacg cgcgtgactc cacccggcta caggcgcccg accaaagacc tgatgacatc 5580 aagccaaaga tgtaaaactg gaacgactcc gaaaggatag gcaacgaatg ttctcactct 5640 tgtgagtaca gggggactcc cctggcattt cggtgt 5676 //