ID JQ700306; SV 1; linear; genomic RNA; STD; VRL; 5679 BP. XX AC JQ700306; XX DT 03-SEP-2012 (Rel. 114, Created) DT 03-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Cucurbit aphid-borne yellows virus isolate CABYV-R-TW82, complete genome. XX KW . XX OS Cucurbit aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5679 RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.; RT "Full length genome analysis of four polerovirus isolates infecting RT cucurbits in Taiwan determined from total RNA extracted from field RT samples"; RL Unpublished. XX RN [2] RP 1-5679 RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.; RT ; RL Submitted (24-FEB-2012) to the INSDC. RL Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan RL 74199, Taiwan XX DR MD5; 138f6a401a684216093de8cbc35bca16. DR EuropePMC; PMC4337425; 24372390. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4677746; 26673519. DR EuropePMC; PMC5712577; 29238357. DR EuropePMC; PMC5903917; 29845082. XX FH Key Location/Qualifiers FH FT source 1..5679 FT /organism="Cucurbit aphid-borne yellows virus" FT /host="Luffa aegyptiaca" FT /isolate="CABYV-R-TW82" FT /mol_type="genomic RNA" FT /country="Taiwan:Tainan County" FT /collection_date="09-Jun-2009" FT /db_xref="taxon:91753" FT 5'UTR 1..20 FT CDS 21..737 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:J7FE71" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:J7FE71" FT /protein_id="AFM68930.1" FT /translation="MQIESVKQQLIFRPTRRTSTNDRKLNVAYFLINHTFFLANNGIQL FT LRCFLARLPLLISEQLSGDYIYTPGASKCIILARFHRHCGAPLPSSSAVDLRLPATKDV FT ARFFLARHYSRIMGEGLQRNQTSLFRGDAEFAKFINVWCSSISRRLRESTPRDFSSYNI FT FVELSYLGFSLRDLVLNPGVHNRNALTRLALHVHRIYGEDAGLDFWRLANLPIKSWPFN FT GERHFEGSVVQKELQS" FT CDS join(142..1473,1473..3311) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /db_xref="GOA:J7FCG4" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:J7FCG4" FT /protein_id="AFM68932.1" FT /translation="MAYNYFAVFLLVCLCSSVSSYQGTIFTPLEPVNASYWLDSTAIAV FT PPSLPQAQLIYDCPPQKMLRDFSSRDITRELWERGYNETRQAFSEVMQSLQNLLMSGVR FT RSRAGLESLLHVTFRVTTYLWSSLIWASACAIWYLIREYTIEMLLLASLYMCTVYMVKM FT LAWIFGDLPIFLLKAGLSTARGISRVLWFRRNYKAEKSVEGFLSFKIPQTPPGKSVLQV FT QHQDGSHAGYATCVALYNGSTGLITAHHVITPGAKIVSTRNGSKIPVSEFRIKLENSKR FT DLILMTGPPNWEGALACKASQMQTANNLCKSKATFFAWNGEDWESSNAEIVGVSACRNY FT VSVLSNTDPGHSGTPYFNGKTLLGVHIGGANDENANYLAPIPAVPGLTSPKYVFETTAP FT QGRLFNDEEIAALIEEFSMSEVASIMKARKGKQVYVEEAAPQQGNRKRGGDRANNRPTL FT SHPGQRRKQYKRNINNCCSFFTEGTLAPRTIASHEHEPWNDEKPRCFCAIPGHDCFFRN FT FIGNQERNTGENKPPVNREAGCGSLDEEGHEESRKEATKRQAEDFQRFFDSQYTWEPGS FT GREAPGFKQVGRLPEFYHPKQKTGSKWGAKICRQHPEMGTYTQGFGWPQFGAQAELKSL FT RLQAARWLERAQSVKIPSSEERERVIRKCCEAYKNAKTIGPNATRGDSLSWEGFLEDFK FT QAVFSLEFDAGIGVPYIAYGRPTHRGWVEDPKLLPILARLTFNRLQKMLEVRFEHLSPA FT ELVQAGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLIDQLVARVLFQNQNKREITLW FT RAVPSKPGFGLSTDEQVVEFMRILSAQVGVAPKELIGNWQHHLIATDCSGFDWSVSDWL FT LEDDMEVRNRLTLDINETTKRLRSAWLKCISNSVLSLSDGTLLSQQVPGVQKSGSYNTS FT SSNSRIRVMAAYHCGAEWAMAMGDDALESVGSNLAKYAELGFKVEVSSKLEFCSHIFER FT EDLAVPVNKAKMIYKLIHGYEPECGNAEVLINYLAACFSVLNELRSDPQLVSTLHQWLV FT LPVQPQKI" FT CDS 142..2037 FT /codon_start=1 FT /product="P1" FT /db_xref="GOA:J7FD99" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:J7FD99" FT /protein_id="AFM68931.1" FT /translation="MAYNYFAVFLLVCLCSSVSSYQGTIFTPLEPVNASYWLDSTAIAV FT PPSLPQAQLIYDCPPQKMLRDFSSRDITRELWERGYNETRQAFSEVMQSLQNLLMSGVR FT RSRAGLESLLHVTFRVTTYLWSSLIWASACAIWYLIREYTIEMLLLASLYMCTVYMVKM FT LAWIFGDLPIFLLKAGLSTARGISRVLWFRRNYKAEKSVEGFLSFKIPQTPPGKSVLQV FT QHQDGSHAGYATCVALYNGSTGLITAHHVITPGAKIVSTRNGSKIPVSEFRIKLENSKR FT DLILMTGPPNWEGALACKASQMQTANNLCKSKATFFAWNGEDWESSNAEIVGVSACRNY FT VSVLSNTDPGHSGTPYFNGKTLLGVHIGGANDENANYLAPIPAVPGLTSPKYVFETTAP FT QGRLFNDEEIAALIEEFSMSEVASIMKARKGKQVYVEEAAPQQGNGNAAATAQTTGPHS FT ATRGNGESSTKETSTTAAPSSPKEPLPQEPSRATSTNRGMMKSRDVSVQSPDTTASSET FT LSEIKNAILERINLQSIEKQVVEALTKKATRSRGRRQQKDKPKTSSDSSTPNTHGSREV FT EEKPLDSNRSAASPSFTTPSRRRGRNGGPRYAGNTQKWVPTPRASGGHSSVPRPN" FT CDS 3510..5513 FT /codon_start=1 FT /transl_except=(pos:4107..4109,aa:OTHER) FT /product="P3-P5 readthrough protein" FT /db_xref="GOA:J7FE72" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:J7FE72" FT /protein_id="AFM68935.1" FT /translation="MNTAVARNQNAGRRRRRNQRPSRRNRVVVVNPIGGPPRGRRQRRN FT RRRANRGGRARGGSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTAKQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPKXVDGSPPPPPSPSPTPPPPPPPP FT QPQPQPCVQRFWGYEGNPQNKILTAENSRNIDSRPLNFVQMYKWEDEKWDKVNLQAGYT FT RNDRRCMETYLTIPADKGKFHVYLEADGEFVVKHIGGELDGSWLGNIAYDVSQRGWNIG FT NYKGCKIKNYQSNTTFVAGHPDASMNGKNFDAARAVEVDWFASFELECDDEEGSWAIYP FT PPIQKDSSYNYTVSYGNYTEKYCEWGAISVSIDEDNDGGMPRRIPRKGAMTWSSPEPSF FT SGDLSQRQDFKTPSPEERGSDTLESETEREEENPLNRLEESIPDVDEDYWTGIPLGSTA FT ATTEGDRASTSSRLRGNLKPKGLPQPQPTRTITKFNPDPDLVEAWRPDLAPEYSKADVA FT AATVIAGGSIHEGRDMLRRRDEKVMESRKKWGILSSASSLTSGSLKKLSAQSEKLAKLT FT TGERAEFERIKNSLGRTAAAEYLEVVLADKTS" FT CDS 3510..4109 FT /codon_start=1 FT /product="P3" FT /db_xref="GOA:J7FDP1" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:J7FDP1" FT /protein_id="AFM68933.1" FT /translation="MNTAVARNQNAGRRRRRNQRPSRRNRVVVVNPIGGPPRGRRQRRN FT RRRANRGGRARGGSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTAKQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPK" FT CDS 3538..4113 FT /codon_start=1 FT /product="P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:J7FCV2" FT /protein_id="AFM68934.1" FT /translation="MQGGAGDEISALHGATAWLWSTRLGDHRAEDDNDETADALIEEAE FT LEEEAQAKHSYFQRTISRAVPQEVSLSGRLFQRAQHSALEYSRPTMNIRSSWSSWSSSP FT RPLPPPRVPSLMSWTPTASLAPSNPRLINLESPRMDCEDGQLSRLTGWNGTTQPRTNSR FT SSTKGTDLPRLRAASESPSSVRSRTRNR" FT 3'UTR 5514..5679 XX SQ Sequence 5679 BP; 1569 A; 1425 C; 1427 G; 1258 T; 0 other; acaaaagaaa cgagcgggtg atgcaaattg agtctgttaa gcaacaactt atcttcagac 60 ctacccgacg tacgagcaca aacgatcgaa aattaaacgt agcatatttt ctgatcaatc 120 atactttctt tttagcgaac aatggcatac aattacttcg ctgttttctt gctcgtctgc 180 ctctgctcat cagtgagcag ttatcagggg actatattta cacccctgga gccagtaaat 240 gcatcatact ggctcgattc caccgccatt gcggtgcccc cctcccttcc tcaagcgcag 300 ttgatttacg actgcccgcc acaaaagatg ttgcgcgatt tttcctcgcg cgacattact 360 cgagaattat gggagagggg ttacaacgaa accagacaag ccttttcaga ggtgatgcag 420 agtttgcaaa atttattaat gtctggtgtt cgtcgatctc gcgcaggctt agagagtcta 480 ctccacgtga cttttcgagt tacaacatat ttgtggagct ctcttatctg ggcttcagcc 540 tgcgcgattt ggtacttaat ccgggagtac acaatcgaaa tgctcttact cgcctcgctc 600 tacatgtgca ccgtatatat ggtgaagatg ctggcttgga tttttggcga cttgccaatc 660 ttcctattaa aagctggcct ttcaacggcg agaggcattt cgagggttct gtggttcaga 720 aggaactaca aagctgagaa atctgtagaa ggatttctct catttaaaat cccacaaacc 780 cctcccggca aaagtgtgtt gcaagtgcag caccaggatg gatcccacgc aggttatgca 840 acctgcgttg cgctttacaa tggatcaaca gggcttataa cagcccatca cgtgatcact 900 cctggcgcta aaatagtctc cactcggaac ggctctaaaa taccagtctc cgagtttcgc 960 atcaaactgg aaaattcgaa gagagactta atattgatga ctggcccacc gaattgggaa 1020 ggggccttgg cttgcaaagc gtcgcaaatg cagacagcta acaatttatg caagtccaag 1080 gccacctttt tcgcctggaa tggcgaagat tgggagtcat caaatgctga gatagtcggg 1140 gtttctgcgt gcagaaatta tgtctcagta cttagcaaca cagatcccgg ccacagtggc 1200 accccgtatt tcaatggaaa aacattgttg ggtgtccaca ttgggggcgc aaacgatgaa 1260 aatgcgaatt acctagcccc catccctgca gtacctggtc tcacgtcacc aaagtacgtt 1320 tttgagacca cagcacccca aggccgcttg tttaacgatg aggaaatagc ggcgttaatt 1380 gaggagttca gcatgtccga ggtcgcttca attatgaagg cccggaaagg aaagcaagta 1440 tatgttgaag aggctgctcc tcagcaggga aacggaaacg cggcggcgac cgcgcaaaca 1500 accggcccac actcagccac ccggggcaac ggagaaagca gtacaaaaga aacatcaaca 1560 actgctgctc cttcttcacc gaaggaaccc ttgccccaag aaccatcgcg agccacgagc 1620 acgaaccgtg gaatgatgaa aagccgcgat gtttctgtgc aatccccgga cacgactgct 1680 tcttccgaaa ctttatcgga aatcaagaac gcaatactgg agagaataaa cctccagtca 1740 atagagaagc aggttgtgga agccttgacg aagaaggcca cgaggagtcg aggaaggagg 1800 caacaaaaag acaagccgaa gacttccagc gattcttcga ctcccaatac acatgggagc 1860 cgggaagtgg aagagaagcc cctggattca aacaggtcgg ccgcctcccc gagttttacc 1920 accccaagca gaagacgggg tcgaaatggg gggccaagat atgccggcaa cacccagaaa 1980 tgggtaccta cacccagggc ttcgggtggc cacagttcgg tgcccaggcc gaactgaaat 2040 ccttgcggct acaagccgcc aggtggctgg agcgcgccca gtctgttaaa atcccctcat 2100 ctgaggagcg ggagcgcgtt atcaggaaat gctgtgaggc ctataaaaat gctaaaacca 2160 tagggcccaa cgcaacgaga ggagatagct tatcctggga aggattcctt gaagatttta 2220 agcaagctgt cttctcgctc gaatttgatg caggcatcgg cgtaccatac attgcttatg 2280 gaaggccaac tcaccgaggg tgggttgaag atccaaaatt attgccgatc ttagctcgcc 2340 tgaccttcaa ccgtttacag aagatgttgg aggttaggtt tgagcatcta agccctgcgg 2400 agcttgtgca ggcgggtctc tgtgacccga tacgcgtgtt tgtcaaaggt gaaccgcaca 2460 agcagagcaa attagatgaa ggccgctacc gcctcatcat gagcgtttcc ttgatagatc 2520 aattggtagc ccgggtttta ttccaaaatc agaataaaag agaaatcact ctgtggaggg 2580 cagtaccctc taaacccggt ttcggcttgt ctacggacga gcaagtcgtg gagttcatga 2640 gaatactctc cgcgcaggtg ggggttgcac ccaaagaatt aataggcaat tggcaacacc 2700 accttattgc gactgactgc tccggctttg actggagcgt ttcggactgg ctccttgaag 2760 atgatatgga agtccgaaac cgcctgacgc tggacatcaa tgagaccacc aagcgcttga 2820 gatcagcttg gttgaagtgc atctcgaata gcgtcctcag cctctccgat gggacccttc 2880 tgtcacagca ggtccccgga gtacaaaaat ctggcagcta caatacctca tcctccaatt 2940 ctaggattcg agtgatggct gcatatcatt gtggggctga gtgggcgatg gcaatgggcg 3000 atgacgccct cgagtcagtc ggctcaaacc tagcgaaata cgctgagcta ggtttcaaag 3060 tcgaggtttc ttcaaaactg gaattttgct cacatatttt cgaacgtgaa gacctcgccg 3120 ttccggtcaa taaagccaaa atgatatata agttaataca tggctatgaa ccggaatgtg 3180 gcaatgctga ggttctgatt aattatctgg ccgcctgttt ttcagttctc aatgaattgc 3240 ggtcagatcc tcagcttgtc tcgactctcc atcagtggct ggttcttcca gtgcagccac 3300 aaaagatata aggggagtat aaagaacact agccaagcat acacgagttg caagcgttgg 3360 aagtctagtc tcgttacaaa gagtccacac aatagactac aaatttctcg cagggttttc 3420 cagcggtcta ttgtccgcaa tacctgtcac ggtaatagga ctctattttg tctacctaaa 3480 gatttcagca cacgtgcgag ccatcgttaa tgaatacggc cgtggctaga aatcaaaatg 3540 cagggaggcg caggcgacga aatcagcgcc cttcacggcg caaccgcgtg gttgtggtca 3600 acccgattgg gggaccaccg cgcggaagac gacaacgacg aaaccgccga cgcgctaatc 3660 gaggaggcag agctagagga ggaagcccag gcgaaacatt cgtattttca aaggacaatc 3720 tcacgggcag ttcctcagga agtatcactt tcgggccgtc tctttcagag agcccagcat 3780 tcagctctgg aatactcaag gcctaccatg aatataagat catcatggtc cagctggagt 3840 tcatctccga ggcctcttcc acctcctcgg gttccatctc ttatgagttg gacccccact 3900 gcaagcttag ctccctccaa tccacgatta ataaatttgg aatcaccaag aatggattgc 3960 gaagatggac agctaagcag attaacggga tggaatggca cgacgcaacc gaggaccaat 4020 tcaagatcct ctacaaaggg aacggatctt cctcggttgc gggcagcttc agaatcacca 4080 tcaagtgtca ggtccagaac ccgaaatagg tagacggcag cccccccccc cccccaagtc 4140 ccagcccgac tccaccaccc cccccacctc ctcctcagcc ccaacctcaa ccttgcgttc 4200 agcgcttttg gggttatgag ggcaacccac agaataagat actaacggca gaaaactcga 4260 ggaacatcga ttcccggccg ttgaactttg tgcaaatgta caagtgggaa gacgagaagt 4320 gggataaagt caacttacaa gccgggtaca cccgcaacga tcgacgttgc atggaaacat 4380 atctcacaat tccagcagat aaaggaaaat ttcacgttta tcttgaggct gatggtgagt 4440 tcgtcgtcaa acatattggc ggcgagttag acggcagttg gcttggaaac atcgcttacg 4500 acgtttccca aaggggttgg aatataggaa attacaaagg ttgtaaaatt aaaaattatc 4560 aatccaatac gacctttgtg gcaggacacc ccgacgcgtc catgaatgga aagaattttg 4620 acgcggcgcg ggcagttgag gtcgattggt tcgcttcctt tgaactagaa tgtgatgatg 4680 aagaaggaag ctgggccata tatcctcccc ccatacagaa ggattcttcg tataactaca 4740 ccgtctcata cgggaattac acggagaaat attgcgagtg gggggctata tcggtctcaa 4800 tcgatgaaga taatgatggg ggcatgccta gaagaatacc acgtaagggg gcaatgacgt 4860 ggtcctcccc tgagccgtcc ttctcagggg atctgagtca aagacaagac tttaaaactc 4920 cttcgcccga agagcgaggt tccgatactc tggaatcgga gactgagagg gaagaggaaa 4980 accctctcaa taggcttgag gagagtatac ccgatgttga tgaagattac tggacgggta 5040 tacctctcgg atctacagca gcaaccactg aaggcgatcg agcatcgacc agctctcgtc 5100 ttcgtggcaa tctcaagcca aaaggcttac cacagccaca acccacccgg acgataacaa 5160 agtttaatcc agatccagat ttggtggaag cgtggaggcc tgatctagca cccgaatact 5220 ccaaagcgga cgtcgcagca gcgaccgtca tcgctggagg gagtatccac gagggacgag 5280 atatgctcag acgaagggac gagaaagtga tggaaagcag gaagaaatgg ggaattcttt 5340 cctcagcttc ttccctcact agcggttcct taaagaagct cagcgcgcag tcagagaagc 5400 tcgccaagtt aacaactggt gagcgcgcgg aattcgaacg aatcaagaat tcactaggca 5460 ggactgctgc tgctgagtat ctcgaagtgg tgctagctga caaaacctcg taatcgcttt 5520 gtggagacgc gcgagactcc acccggtctc cagtgaaccc gaccaaatca ctgggaaaca 5580 tcaagccaaa gatgtaaaat tggaacgact ccgtaaggat aggcaacgga tgttctcact 5640 tctgtgagca cagggggact ccccctggca ttccggtgt 5679 //