ID JQ700305; SV 1; linear; genomic RNA; STD; VRL; 5670 BP. XX AC JQ700305; XX DT 03-SEP-2012 (Rel. 114, Created) DT 03-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Cucurbit aphid-borne yellows virus isolate CABYV-C-TW20, complete genome. XX KW . XX OS Cucurbit aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5670 RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.; RT "Full length genome analysis of four polerovirus isolates infecting RT cucurbits in Taiwan determined from total RNA extracted from field RT samples"; RL Unpublished. XX RN [2] RP 1-5670 RA Knierim D., Tsai W.S., Deng T.C., Green S., Kenyon L.; RT ; RL Submitted (24-FEB-2012) to the INSDC. RL Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan RL 74199, Taiwan XX DR MD5; a76afd7e45e00faad92a9a313f669c17. DR EuropePMC; PMC4337425; 24372390. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4677746; 26673519. XX FH Key Location/Qualifiers FH FT source 1..5670 FT /organism="Cucurbit aphid-borne yellows virus" FT /host="Momordica charantia (bittermelon)" FT /isolate="CABYV-C-TW20" FT /mol_type="genomic RNA" FT /country="Taiwan:Kaohsiung County" FT /collection_date="08-Nov-2008" FT /db_xref="taxon:91753" FT 5'UTR 1..20 FT CDS 21..737 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:J7FE69" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:J7FE69" FT /protein_id="AFM68925.1" FT /translation="MQIESVKQQLIFRPTRHTSTDERRYNIYHFLVNYTFFWAQHGLQL FT LRLFLARLPLLISEQLSGDYVYTPGASKRIILARFHRHCGAPLHSSSAVDLRLPASKDV FT ARFFLARHYSRVMGEGLQRRQTDLFRGYEAFERFINVWCSSTTRRLRELAPRDFSSDNI FT LVELSNLGRCLRDLVFTPEIHNRNALTRLALHVHRIYGEDGSLDFWRLANLPSKSWPFY FT GERCFENSVVQKILQS" FT CDS join(142..1485,1485..3305) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /db_xref="GOA:J7FDP0" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:J7FDP0" FT /protein_id="AFM68928.1" FT /translation="MAYNYFAFFLLVCLCSSVSSYQGTMFTPLEPVNASYWLDSTATAV FT PLSTPQVQLIYDCPPQKTLRDFSSRDITQELWERGYNDARQTSLEVMKHLKDLSMSGAR FT RLRAGLESLLHVTFRVTTYLWSSLIWAAVCAIWYLLQKYTIEMLLLASLYMCTVYMVKM FT AAWIFGDLPIFLLKAGLSMARGVSRTLWYKRSYKAEKSVEGFLSYNIPQSPPKNSVLQV FT QYKDGSHAGYATCVTLYDGTNGLLTAHHVAVPGSKIVSTRNGNKIPLSEFRSIMESEKR FT DLVLLAGPPNWEGALACRAVPLQTAQNLCKSKATFFAFNGEGWTSSNAEIVGIAQGRTH FT ASVLSNTDAGHSGTPYFNGKTVLGVHVGGAKEENANYMAPIPPVNGLTSPNYAFETTAP FT QGRLFTQEEIDELIEEFSFSEITSIMGHRQSRKQNSRQHQADYERESGNRAGGRDRRNN FT RTRCHPRGWAQKWRRTVSCCSLFPEGQHVHSSEQTGRPHCFCSIPHHQCFHRLCVGNQT FT SDNGQNRCPFNREAGGSSLDGSSHEETKAAQTRQERFEKLTTDFSCFFDAQYIWEQGGE FT EAPGFDKVGSLPQFYHAKQKKSSNWGDKICKQHPEMGDLTKGFGWPQFGAKAELKSLRL FT QAARWLERAQSVKIPSSEEREHVIERCVRAYSNVKTNGPMATRGDRLSWDNFLQDFKQA FT VLSLEMDAGIGVPYIAYGKPTHRGWVEDQELLPILARLTFNRLQKMLEVRFEDLSPAEL FT VREGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWRV FT VPSKPGFGLSTDEQVAEFMQILSAQVGLTPSEVITEWRTHMIATDCSGFDWSVSDWLLE FT DDMEVRNRLTLDLNETTRRLRAAWLKCISNSVLCLSDGTLLAQRVPGVQKSGSYNTSSS FT NSRIRVMAAYHCGAEWAMAMGDDALESACSNLERYKSLGFKVEESSKLEFCSHIFEKED FT LAIPVNKAKMLYKLIHGYEPECGNVEVLVNYLAACFSILNELRSDPSLVETLHRWLVLP FT VQPQKI" FT CDS 142..2031 FT /codon_start=1 FT /product="P1" FT /db_xref="GOA:J7FCV0" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:J7FCV0" FT /protein_id="AFM68924.1" FT /translation="MAYNYFAFFLLVCLCSSVSSYQGTMFTPLEPVNASYWLDSTATAV FT PLSTPQVQLIYDCPPQKTLRDFSSRDITQELWERGYNDARQTSLEVMKHLKDLSMSGAR FT RLRAGLESLLHVTFRVTTYLWSSLIWAAVCAIWYLLQKYTIEMLLLASLYMCTVYMVKM FT AAWIFGDLPIFLLKAGLSMARGVSRTLWYKRSYKAEKSVEGFLSYNIPQSPPKNSVLQV FT QYKDGSHAGYATCVTLYDGTNGLLTAHHVAVPGSKIVSTRNGNKIPLSEFRSIMESEKR FT DLVLLAGPPNWEGALACRAVPLQTAQNLCKSKATFFAFNGEGWTSSNAEIVGIAQGRTH FT ASVLSNTDAGHSGTPYFNGKTVLGVHVGGAKEENANYMAPIPPVNGLTSPNYAFETTAP FT QGRLFTQEEIDELIEEFSFSEITSIMGHRQSRKQNSRQHQADYERESGNGQAAATAETT FT APAATPAVGHKSGDAQSPAALSSRKDNTYIPPNKREGRTASAASPTTNASTDSVSEIKQ FT AIMDKIDVRSIEKQVVQALMDQAMKKPKPRRRGRRGSKNSQPTSPVSSMPSTSGNKAGK FT KPQDSTKLDPSPSFTTLNKRRARIGETKSANSTQKWVISQRASGGPSSAQKPN" FT CDS 3505..5505 FT /codon_start=1 FT /transl_except=(pos:4102..4104,aa:OTHER) FT /product="P3-P5 readthrough protein" FT /db_xref="GOA:J7FCV1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:J7FCV1" FT /protein_id="AFM68929.1" FT /translation="MNTAVARNQNAGRRRRRNQRPARRDRVVVVNPIGGPPRGRRQRRN FT RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT SMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTARQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPKXVDGSSPPPPGPSPAPPPPPPPP FT QPQPQPCAQRFWGYEGNPQNKILTAENSRNIDSRPLNFVQMYKWEDEKWEKVNLQAGYS FT RNDRRCMETYLTIPADKGKFHVYLEADGEFVVKHIGGELDGSWLGNIAYDVSQRGWNIG FT NYKGCKIKNYQSNTTFVAGHPDASMNGKNFDAARAVEVDWFASFELECDDEEGSWAIYP FT PPIQKDSSYNYTVSYGNYTEKYCEWGAISVSIDEDNNGSAPRRIPRKGAMAWSFPESDF FT SGDMSQRQDVKTPPQSERGSDDLASEEKKEEENLLDELEESIPDTDEDFWKGIPLGSTA FT ATTEGDRASTSSRLRGNLKPPGLPKPQPTRTITDFKPNPDLVEAWRPDLAPTYSKADVA FT AATVIAGGSVHEGREHLKRRDDAVMDSRKKWGPLSTVSSLTGGTLKVSAQSEKLAKLTT FT GERREYERIKNSSGKTVAAEYLELVLAEKTS" FT CDS 3505..4104 FT /codon_start=1 FT /product="P3" FT /note="coat protein" FT /db_xref="GOA:J7FD98" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:J7FD98" FT /protein_id="AFM68926.1" FT /translation="MNTAVARNQNAGRRRRRNQRPARRDRVVVVNPIGGPPRGRRQRRN FT RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT SMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTARQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPK" FT CDS 3533..4108 FT /codon_start=1 FT /product="P4" FT /note="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:J7FCG3" FT /protein_id="AFM68927.1" FT /translation="MQGGGGEEINALQGVTAWLWSTPLGGHHAEDDNEETADALIEEAE FT LEDEARAKHLYFQRTISRAVPQEVSLSGRLYQRAQHSALEYSRPTMNIKSAWSSWSSSP FT RPLPPPQVPSLMSWTPTASLAPSNPRLISLESPRMDCEDGQLGRLTGWNGTTQPRTNLR FT SSTKGMDLPRLRAASESPSSARSKTRNR" FT 3'UTR 5506..5670 XX SQ Sequence 5670 BP; 1545 A; 1465 C; 1409 G; 1251 T; 0 other; acaaaagaaa caagcgggtg atgcaaatag agtctgtcaa gcaacaacta atattcagac 60 caacccgaca cacgagcacc gacgaacgaa ggtacaatat ctaccacttt ctcgtcaatt 120 acactttctt ttgggcgcaa catggcttac aactacttcg cctttttctt gctcgtttgc 180 ctctgctcat cagtgagcag ctatcagggg actatgttta cacccctgga gccagtaaac 240 gcatcatact ggctcgattc caccgccact gcggtgcccc tctccactcc tcaagtgcag 300 ttgatctacg actgcccgcc tcaaaagacg ttgcgcgatt tttcctcgcg cgacattact 360 caagagttat gggagagggg ttacaacgac gccagacaga cctctttaga ggttatgaag 420 catttgaaag atttatcaat gtctggtgct cgtcgactac gcgcaggctt agagagcttg 480 ctccacgtga cttttcgagt gacaacatac ttgtggagct ctctaatctg ggccgctgtc 540 tgcgcgatct ggtatttact ccagaaatac acaatcgaaa tgctcttact cgcctcgctt 600 tacatgtgca ccgtatatat ggtgaagatg gcagcttgga tttttggcga cttgccaatc 660 ttccttctaa aagctggcct ttctatggcg agaggtgttt cgagaactct gtggtacaaa 720 agatcttaca aagctgagaa gtccgttgaa gggtttctct cctataacat cccacagagc 780 cctcccaaga actcggtctt gcaggtccaa tacaaagatg gatctcacgc cgggtatgct 840 acctgcgtca cgctctatga tggaacaaat gggcttctaa ctgcccacca cgtagcagtc 900 ccaggtagca aaatcgtctc caccaggaac ggaaacaaga tccctctcag tgaattcaga 960 tctatcatgg aatccgaaaa gagagatctt gtgctccttg ccggcccccc caactgggag 1020 ggcgccctcg catgtagagc agtaccgctc caaactgccc aaaatctttg caagtcaaag 1080 gccaccttct tcgctttcaa cggagaggga tggacttcat ccaatgctga aattgtcggc 1140 attgcgcagg gcagaaccca tgcatccgtt cttagtaata cggatgcggg tcacagtggc 1200 accccctatt ttaacggcaa aaccgtttta ggtgtccacg ttggtggagc caaggaggaa 1260 aatgccaatt acatggcccc tataccgccc gtcaatggtc tcaccagtcc aaattacgca 1320 tttgagacca cagcccccca gggacgcctc ttcacacaag aggaaataga tgaactcatt 1380 gaagaattct ccttcagtga aattacgtca ataatggggc atcgacaatc ccgcaagcaa 1440 aattcgcgac aacatcaagc tgactatgag cgcgaatcgg gaaacgggca ggcggccgcg 1500 accgccgaaa caaccgcacc cgctgccacc cccgcggttg ggcacaaaag tggagacgca 1560 cagtctcctg ctgctctctc ttcccggaag gacaacacgt acattcctcc gaacaaacgg 1620 gaaggccgca ctgcttctgc agcatccccc accaccaatg cttccaccga ctctgtgtcg 1680 gaaatcaaac aagcgataat ggacaaaatc gatgtccgtt caatcgagaa gcaggtggtt 1740 caagccttga tggatcaagc catgaagaaa ccaaagccgc gcagacgcgg caggagaggt 1800 tcgaaaaact cacaaccgac ttctcctgtt tcttcgatgc ccagtacatc tgggaacaag 1860 gcggggaaga agccccagga ttcgacaaag ttggatccct cccccagttt taccacgcta 1920 aacaaaagaa gagctcgaat tggggagaca aaatctgcaa acagcaccca gaaatgggtg 1980 atctcacaaa gggcttcggg tggccccagt tcggcgcaaa agccgaactg aaatcgctgc 2040 ggctacaagc cgcgcgttgg ctggaacgtg cccagtcagt taaaatcccc tcatctgagg 2100 agcgggagca cgtaatagag agatgcgtcc gggcatatag taatgttaaa actaatggcc 2160 cgatggccac gagaggagat cgactttcct gggataactt cctacaggat tttaaacagg 2220 cggtcctctc gttggaaatg gacgcaggca taggagttcc gtacatagct tacggcaaac 2280 cgacccacag aggatgggtt gaagaccaag aactcctacc gatattggct cgcctcacct 2340 tcaaccggct acagaagatg ttggaggtaa ggttcgaaga cttgtcgcct gccgagcttg 2400 tgcgagaggg tctctgtgac cctattcgag tgttcgttaa aggtgaaccg cacaagcaat 2460 cgaagcttga cgaaggccgc taccgcctta ttatgagcgt ctctctagtt gaccagttgg 2520 tagcccgggt tttattccaa aatcagaaca agcgcgaaat agcgctatgg agagtggttc 2580 cctccaaacc cggttttggc ttgtctacag acgagcaagt ggcggagttc atgcagatcc 2640 tctccgccca agttgggtta acgccttcgg aagtgattac cgagtggcga acccacatga 2700 tagcaactga ctgctccggt tttgactgga gcgtttcgga ctggcttctt gaagatgata 2760 tggaagtccg aaaccgcctg acgcttgatc ttaacgagac aacccgacgc ttgcgagcgg 2820 cctggttgaa gtgtatctcg aacagcgtcc tctgcctttc tgatggaaca ttattagcgc 2880 agagagtccc aggcgtgcag aagagtggca gctacaacac gtcatcgagt aattcccgaa 2940 tccgggtaat ggctgcctac cactgcggtg ccgaatgggc aatggcgatg ggcgatgacg 3000 cccttgagtc agcttgctcg aacctcgagc gttataaatc gctcggtttc aaagtcgagg 3060 agtcctcaaa actggaattt tgttctcaca tttttgagaa agaggacctc gccattccgg 3120 tcaacaaagc caaaatgttg tacaagctta tacatggcta cgaaccggaa tgcggcaatg 3180 tggaagtgct ggtaaattat ctggccgcct gtttctcaat tcttaacgaa ttgcggtcag 3240 atccttccct tgtcgaaact ctccaccggt ggctggttct tccagtacag ccacaaaaga 3300 tataagggga gtataaagaa cactagccaa gcacacacga gttgcaagca ttggaagtct 3360 gagtctcgtt accaaaagtc caaacaatag attataagtt tctcgcagga ttttctagcg 3420 gtctattgtc tgcaatacct gtaacggtaa ttggacttta ttttgtctac ctaaagattt 3480 cagcacacgt gagagccatt gttaatgaat acggccgtgg ctagaaatca aaatgcaggg 3540 aggcggaggc gaagaaatca acgccctgca aggcgtgacc gcgtggttgt ggtcaacccc 3600 attggggggc caccacgcgg aagacgacaa cgaagaaacc gccgacgccc taatcgagga 3660 ggcagagcta gaggacgaag cccgggcgaa acatttgtat tttcaaagga caatctcacg 3720 ggcagttcct caggaagtat cactttcggg ccgtctctat cagagagccc agcattcagc 3780 tctggaatac tcaaggccta ccatgaatat aaaatcagca tggtccagtt ggagttcatc 3840 tccgaggcct cttccacctc ctcaggttcc atctcttatg agttggaccc ccactgcaag 3900 cttagctccc tccaatccac gattaataag tttggaatca ccaagaatgg attgcgaaga 3960 tggacagcta ggcagattaa cgggatggaa tggcacgacg caaccgagga ccaatttaag 4020 atcctctaca aagggaatgg atcttcctcg gttgcgggca gcttcagaat caccatcaag 4080 tgccaggtcc aaaacccgaa ataggtagac ggcagctccc cccccccccc aggtcctagc 4140 ccagcaccac cacccccccc acctcctcct cagccccaac cccaaccttg cgcccagcgc 4200 ttttggggtt atgaaggtaa cccacaaaat aagatactca cggccgaaaa ttcaaggaac 4260 atagattccc ggccgttgaa ctttgtgcaa atgtacaagt gggaggatga gaaatgggaa 4320 aaagtcaact tacaagccgg atactcccgc aacgatcgac gttgcatgga gacgtatctc 4380 acaattccag cagataaagg taaatttcat gtttatcttg aggctgatgg tgagttcgtc 4440 gtcaaacata ttggcggcga gttagacggc agttggctcg gaaatatcgc ttacgatgtt 4500 tcccagaggg gttggaatat tggaaattac aaaggttgta aaattaagaa ctatcaatcc 4560 aacacaacct ttgtggcagg acatcccgac gcatccatga acggaaagaa tttcgatgcg 4620 gctcgggcag ttgaggtcga ttggttcgct tcctttgaac ttgaatgtga tgatgaagaa 4680 ggaagctggg ccatttatcc cccccccata cagaaggatt cttcatataa ttacaccgtc 4740 tcatacggga attatacgga gaagtattgc gagtgggggg cgatctcagt atccattgat 4800 gaagataaca atgggagcgc gcctagaaga ataccacgca agggggcaat ggcgtggtct 4860 ttccccgagt ctgatttctc gggtgatatg agtcaaagac aagacgttaa aactcctccg 4920 caatctgagc ggggttccga tgacctggca tcggaggaaa agaaggaaga ggaaaacctt 4980 cttgatgagc ttgaggagag tatacctgac accgatgaag atttttggaa aggtatacct 5040 ctgggatcta cagcagcaac cactgaaggc gatcgagctt ccacgagctc tcgtcttcgt 5100 ggtaacctca agccaccggg tttacctaag ccacagccta ctcgcactat aaccgatttc 5160 aagccaaacc ctgatttggt tgaggcgtgg cgacccgacc tagcaccgac atactccaag 5220 gcggacgtcg cagcagcgac tgtgatcgcc ggaggttccg tacatgaagg acgagaacac 5280 cttaagagaa gagatgatgc cgtcatggat agcagaaaga aatggggacc gctttcaacg 5340 gtctcctcct taacaggcgg cactcttaag gtgagcgccc agtctgagaa actcgcaaag 5400 cttacgaccg gcgaacgtag agaatacgaa cgcattaaga actcgagtgg aaagactgta 5460 gcagctgaat atctcgagtt ggtgttagct gagaaaacct cgtaagcgct ttgtggagac 5520 gagcgagact ccacccggct tccagtgggc ctgtccaaac cactgggaac atcaagccaa 5580 agatgtaaaa ttggaacgac tccgaaagga taggcaacga acgttctcac tatggtggaa 5640 acaggggttt tccccctggc gtttcggtgt 5670 //