ID JQ692585; SV 1; linear; genomic DNA; STD; VRL; 5331 BP. XX AC JQ692585; XX DT 23-APR-2012 (Rel. 112, Created) DT 26-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Feline bocavirus strain HK797F, complete genome. XX KW . XX OS Feline bocavirus OC Viruses; Parvoviridae; Parvovirinae; Bocaparvovirus. XX RN [1] RP 1-5331 RX DOI; 10.1099/vir.0.042531-0. RX PUBMED; 22495233. RA Lau S.K., Woo P.C., Yeung H.C., Teng J.L., Wu Y., Bai R., Fan R.Y., RA Chan K.H., Yuen K.Y.; RT "Identification and characterization of bocaviruses in cats and dogs RT reveals a novel feline bocavirus and a novel genetic group of canine RT bocavirus"; RL J. Gen. Virol. 93(Pt 7):1573-1582(2012). XX RN [2] RP 1-5331 RA Lau S.K.P., Woo P.C.Y., Yeung H.C., Teng J.L.L., Wu Y., Bai R., Fan R.Y.Y., RA Chan K.H., Yuen K.Y.; RT ; RL Submitted (22-FEB-2012) to the INSDC. RL Microbiology, The University of Hong Kong, University Pathology Building, RL Queen Mary Hospital, Pokfulam Road, Hong Kong, China XX DR MD5; e29ce781c21dd8f3c8e138310ccefe6a. DR EuropePMC; PMC3838256; 24109231. DR EuropePMC; PMC6341152; 29635866. XX FH Key Location/Qualifiers FH FT source 1..5331 FT /organism="Feline bocavirus" FT /host="Felis catus" FT /strain="HK797F" FT /mol_type="genomic DNA" FT /country="Hong Kong" FT /collection_date="22-Dec-2009" FT /db_xref="taxon:1174530" FT gene 257..2671 FT /gene="NS1" FT CDS 257..2671 FT /codon_start=1 FT /gene="NS1" FT /product="NS1" FT /db_xref="GOA:I0E1Q4" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I0E1Q4" FT /protein_id="AFH96872.1" FT /translation="MAEFDTASLDDFIQFADPAYTYVLRLPLPTGENYESQLQNVLCAR FT YPDLLSDPALFATMPGPESPGAQTDFLERFGPSRCFGAEVCYAAHMAAFNXFSRKQGKA FT PPIASIYTQCELGQRNIXCHLVMAGDGLSRFSAKSAAYILGQKFADNLISIIENNLRKG FT DVSNPAFATAFIXEIQEAQRKCEPGNAGDLCTVXQYKSRGGGMYACRIDGREYICNYLL FT CKNLKWVSCVEPDKATPLKAFFPIASKTYAFTLINGKIVPYHVRREWWNQLRDKVLVRD FT EPIFKGDVFGDLPKVNAASWKLTGNMGQGTSQPHVNARMSKKESLILDCLKRCEDNLWL FT TYEDLVGGCADLILMLESMPGGSKLIESVLNMLHVRITQTHSALSYLHVRYDMKELATH FT ADSLHANKAWRLLLKQGYNPLQVGHWICCVLHKKAGKQNTLNFFGPASTGKTNLAKAIV FT NAIKLYGCVNHQNKNFIFNDCAAKLVVWWEECLMHSDWVEQAKCILGGTEFRIDRKHRE FT SHLLPQTPVIISTNNNIYQTLGGNSVSHVHEAPLRERVVQFNFMTRLESTFGEIEPREV FT AEWLSICLSRFDISLVGFHTQWKLNKTPNDFPLAKFCGGHSQDLVLHETGTCMSCGGYY FT PLELHDRGDIEDATPGTSYSTLLQLTPKSEKYIQEFNLDLLKSPIAATSTPVTRQDPPE FT LPPKKKVRKEKHCARALFTDDWCSQPRDDVEWRVVQERAEAAAAEVSGSRSESDSGQAS FT SMELDLSPEQWGEMLGLISGDIEAGEPPITLHCFESITEADLLCQTDSETE" FT gene 2424..3080 FT /gene="NP1" FT CDS 2424..3080 FT /codon_start=1 FT /gene="NP1" FT /product="NP1" FT /db_xref="InterPro:IPR021075" FT /db_xref="UniProtKB/TrEMBL:I0E1Q9" FT /protein_id="AFH96873.1" FT /translation="MSSGASSKNEQKRRRPRSLDRDPSPIPDKRARWSSTSHQNNGERC FT SDSSPGTSKRENRRSHSTALNPSPKLTYFVKRTQKPNKQTPLDVFMKHRAKEGGDVPPF FT CGFYWHSTRLARFGTDAIFNLYKPKFQEMSKNNVITWDQCRDLLFDFKKNLDYKYRSMM FT WHFSMGEQCHKCNYWDKMYAGHLANVSLSTQEEDSDPVTDAEMLAVAMEVDGTDQ" FT gene 3064..5202 FT /gene="VP1" FT CDS 3064..5202 FT /codon_start=1 FT /gene="VP1" FT /product="VP1" FT /db_xref="GOA:I0E1R0" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:I0E1R0" FT /protein_id="AFH96874.1" FT /translation="MAPTNRRPGGWTLPGFRYLGPFNPLNNGKPVNEVDKVAQKHDKAY FT DSYIKAGVNPYLHFNKADSDFIDSLSTDSSVAGWLGKSAFKLKRLLAPHLSKEKEAAGN FT KGGTGGKRAKLDPVRAQKRKYYFARQNQGKNPKQQKMENEVETAGDGQEGAPAGTARAG FT GGGNGAGMGGGGHGVGVSTGGWRAGTIFSDNVIITTSTRQWYVPIYNGHLYKEIFANGS FT VREWVGISTPWGYFNFNEYDAHFTPNDWQRLTNEYAKWRPKRMHVKIYNLQIKQKVTLG FT VDTLYNNDLTAGVHIFCDGSHQFPYSQKPWDFGTMPELPYDVWKLPQYGYFQFQNDLSD FT QSSNSLAADNVEKNIVRNAPFFVLESASHEVLRTGEETEFNFEFECGWVTNTRAYAPPQ FT ADFNPLVETRRYYPTYDNSSSTKFVYARYSPYNKPSNWMPGPSIGYIGNTTTGSNYQTR FT GPITVCPHPYFTTPGNLETDRAYDPQSGTNTLTEAGMRKSGYDVTPVNGACSRLDSVDL FT AYDSSEYSLNQTKLISRNIDSDMARWGSVWAQDGLNKEIGDNGQPNNTDRKNISQLKNI FT WMYPNQAWDTTPIARNTPIWDKVPDTDRNTMLDSADGTLPMPHPPGTIFVKVAKIPIPT FT ENNADAYLDLYVTGQVTCTIEWEVARFKTKNWRPEIRTSATMFSDPKIYSVNASGVYNT FT PETFTESMPTKWGINKVL" FT gene 3484..5202 FT /gene="VP2" FT CDS 3484..5202 FT /codon_start=1 FT /gene="VP2" FT /product="VP2" FT /db_xref="GOA:I0E1Q7" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:I0E1Q7" FT /protein_id="AFH96875.1" FT /translation="MENEVETAGDGQEGAPAGTARAGGGGNGAGMGGGGHGVGVSTGGW FT RAGTIFSDNVIITTSTRQWYVPIYNGHLYKEIFANGSVREWVGISTPWGYFNFNEYDAH FT FTPNDWQRLTNEYAKWRPKRMHVKIYNLQIKQKVTLGVDTLYNNDLTAGVHIFCDGSHQ FT FPYSQKPWDFGTMPELPYDVWKLPQYGYFQFQNDLSDQSSNSLAADNVEKNIVRNAPFF FT VLESASHEVLRTGEETEFNFEFECGWVTNTRAYAPPQADFNPLVETRRYYPTYDNSSST FT KFVYARYSPYNKPSNWMPGPSIGYIGNTTTGSNYQTRGPITVCPHPYFTTPGNLETDRA FT YDPQSGTNTLTEAGMRKSGYDVTPVNGACSRLDSVDLAYDSSEYSLNQTKLISRNIDSD FT MARWGSVWAQDGLNKEIGDNGQPNNTDRKNISQLKNIWMYPNQAWDTTPIARNTPIWDK FT VPDTDRNTMLDSADGTLPMPHPPGTIFVKVAKIPIPTENNADAYLDLYVTGQVTCTIEW FT EVARFKTKNWRPEIRTSATMFSDPKIYSVNASGVYNTPETFTESMPTKWGINKVL" XX SQ Sequence 5331 BP; 1704 A; 1119 C; 1165 G; 1331 T; 12 other; cctggcgcga tgacgtgtca gtgagggtgt tgtctaaaga ctatagggat caatgatagg 60 ttcagccatg taatgattaa ctgaccttta acgtgattgg ttgggagtta atgattaaca 120 tgtgaccttt acagtgattg gttctctgaa cctataaaaa gagctgcatt tccgtgtctg 180 tgtcattctg cttccggcgc tcgacgagat cggacctgga gaagaacaag ttccgtcaat 240 tggtgagtcg ccatcaatgg ctgaattcga tacagcaagt ctcgacgact tcatccaatt 300 tgcagaccca gcatatacat acgtgctgcg tcttccatta cctacagggg aaaattatga 360 gagccagcta cagaatgtat tatgcgctcg ataccccgat ttattatccg atccggcatt 420 gttcgcaaca atgcctggac ctgaatctcc aggcgctcag actgattttt tggagcgttt 480 tggtcctagc cgctgctttg gggctgaagt ctgctatgcg gcgcatatgg cagcctttaa 540 ctwctttagt aggaaacagg gaaargcgcc rcctatygcc agcatctaca cacaatgcga 600 attaggccag agaaacattc awtgtcatct agtcatggcc ggcgacggtc tgtctcgttt 660 ctcggctaar agcgctgcct acatactagg ccaaaaattt gcagacaatc tgatttctat 720 catcgaaaat aatctaagaa arggcgacgt magyaatcca gcttttgcta ccgcttttat 780 caragaaata caagargctc aaagaaaatg cgaaccaggc aacgctggcg acctttgtac 840 tgtgwtgcaa tataaaagta gaggaggcgg catgtacgcg tgccgaatcg atggccgcga 900 gtacatctgt aactacctat tatgcaagaa cctgaaatgg gtatcttgcg tggaaccaga 960 caaggcgact cctcttaaag ccttctttcc aatcgcttca aaaacatatg catttactct 1020 aattaatgga aagattgttc cgtatcacgt acgtcgtgaa tggtggaatc aactacgaga 1080 caaggtccta gtcagggacg aaccaatctt taagggagac gtgtttggag atcttccaaa 1140 ggtaaatgct gcgtcatgga aattaactgg taatatgggt caaggtacat ctcagccgca 1200 tgtgaatgcc agaatgagta aaaaagaatc attaatacta gactgtctta aacgttgcga 1260 ggataatcta tggctaacct atgaagatct ggtcggtggt tgtgccgatt taattttaat 1320 gttggaatcg atgccaggtg gaagtaaatt aattgagtct gtacttaaca tgttgcatgt 1380 tagaatcact caaactcata gtgcgttgtc ctatttgcat gtgagatatg acatgaaaga 1440 actggcgact cacgcagact cgctccacgc taataaagca tggagattac tactaaaaca 1500 aggatataat cctctacaag tgggacattg gatctgctgt gtcctacata aaaaagcagg 1560 aaaacaaaat acattaaatt tctttggacc ggctagcacc ggtaaaacaa atctggcaaa 1620 agcaatcgtg aatgcaatca agctctatgg ttgcgtcaat caccaaaaca aaaattttat 1680 ctttaacgat tgtgccgcaa aactagttgt ctggtgggaa gaatgtctca tgcattcaga 1740 ctgggtcgag caagctaaat gtatcttggg cggcacggag tttagaattg acagaaaaca 1800 cagagaatcg catctattgc cacaaactcc tgtaatcatc tcaacgaata acaatatata 1860 tcaaacactg ggtggcaact cggtctcaca tgtacatgaa gctcctctaa gagaaagagt 1920 cgtccagttt aatttcatga cacgtctaga aagcaccttt ggagagattg aaccaagaga 1980 agtagccgaa tggctatcca tctgtctctc tcggtttgac atctctctgg ttggctttca 2040 tactcaatgg aagctaaata aaactccaaa tgactttcca ttggctaaat tctgcggtgg 2100 tcactcacag gatctcgtgt tacatgagac cggaacgtgt atgagctgtg gcggatacta 2160 tcctctagaa ctacacgatc gaggcgacat cgaggacgct acaccaggta cgagctactc 2220 aactctatta caattaacac ctaaatctga aaaatacata caagaattta acttggatct 2280 cttgaaatct ccaatagcgg ccacgagcac tcctgtgact cgacaggatc cacctgagct 2340 tcctccaaaa aagaaggtac gcaaagaaaa acactgcgca cgcgctctct ttactgacga 2400 ctggtgctct caacctcgag acgatgtcga gtggcgcgtc gtccaagaac gagcagaagc 2460 ggcggcggcc gaggtctctg gatcgagatc cgagtccgat tccggacaag cgagctcgat 2520 ggagctcgac ctctcaccag aacaatgggg agagatgctc ggactcatct ccggggacat 2580 cgaagcggga gaaccgccga tcacactcca ctgctttgaa tccatcaccg aagctgactt 2640 actttgtcaa acggactcag aaaccgaata aacaaacacc tcttgatgtc tttatgaaac 2700 atagagccaa agagggggga gatgtacctc cattttgtgg gttttactgg catagtacta 2760 gattagcaag atttggaaca gatgcaatct ttaatttgta taaacctaaa tttcaagaaa 2820 tgtcaaaaaa caatgtaatt acgtgggatc aatgtcgtga tttgttgttt gattttaaaa 2880 agaacctaga ctataaatac agatctatga tgtggcattt tagcatgggt gaacaatgtc 2940 ataaatgtaa ttactgggat aaaatgtacg ctgggcatct ggctaatgta tctctatcta 3000 cacaggaaga ggactctgac cctgtaactg acgctgaaat gctggcggtt gccatggagg 3060 ttgatggcac cgaccaatag gcgtcctggc ggttggactc tgcccggttt cagatatctt 3120 ggtccattta atccattgaa taacggtaaa ccagtaaacg aagtagataa agttgctcaa 3180 aagcacgata aagcttacga ttcttatatc aaggctggcg tcaatccata tttgcacttt 3240 aataaagctg actctgattt cattgattcg ctgtctactg attcgtctgt tgccgggtgg 3300 ctgggaaaat cggcgtttaa actcaagaga cttttggcgc cacatctttc aaaagaaaaa 3360 gaagcagcgg gtaataaagg aggaactggt ggaaaacgcg ccaagcttga tccggtacgg 3420 gctcaaaaaa gaaaatatta ttttgcccgt caaaaccagg gaaaaaatcc taaacaacaa 3480 aaaatggaaa atgaagttga gacggctggg gatggacaag agggggcgcc agctggcact 3540 gctcgtgctg gtggtggtgg taacggtgct ggtatgggtg gtggtggcca tggtgtcggt 3600 gtaagcacgg gagggtggag agctggaact atcttttctg ataatgttat aattacaaca 3660 tcaactagac aatggtatgt tccaatatat aatggtcatc tgtacaaaga aatattcgca 3720 aatgggagcg taagagaatg ggtaggaata agtacccctt ggggatactt taatttcaat 3780 gaatacgatg ctcactttac accaaacgat tggcaacgac tcacaaacga gtatgccaaa 3840 tggagaccaa aaagaatgca tgtcaagata tacaatctcc aaattaaaca aaaggtgaca 3900 ctgggggtgg acaccctata taacaacgac cttacggcgg gtgtacacat tttttgtgac 3960 ggttctcatc aattcccata ctcacaaaaa ccttgggatt ttggaacaat gccagaattg 4020 ccatatgatg tatggaagct tccacaatac gggtattttc aatttcaaaa tgatctctca 4080 gatcaatcat caaactcgct tgcagcagat aatgtagaaa aaaatattgt gagaaatgct 4140 ccattttttg tattagaatc tgcatctcac gaggtcctca gaacaggaga agaaacagaa 4200 ttcaactttg aatttgaatg tgggtgggtc acaaatacac gtgcatatgc tccgcctcag 4260 gcagacttca atccattagt tgaaactaga cgttattatc caacatacga caactcatct 4320 agcactaaat ttgtatacgc tagatattca ccatataaca aacctagtaa ctggatgccc 4380 ggtccgagta ttggatatat aggaaacaca acaaccggct caaactacca aacaagaggg 4440 ccaatcacag tatgcccaca tccatatttt actacacctg gaaatttaga aacagacagg 4500 gcatatgacc cacaaagtgg aacaaataca ttaaccgaag ctggcatgag aaaatcggga 4560 tacgatgtaa cacctgtaaa tggtgcctgc tcccgactgg actctgttga cttggcatat 4620 gattcgtctg aatatagctt aaatcaaaca aaattaattt caagaaacat agatagtgac 4680 atggctagat ggggttcagt gtgggcacag gatggattga ataaagaaat aggagacaat 4740 ggacaaccaa acaacacaga cagaaaaaat atcagccagc taaaaaacat atggatgtat 4800 ccaaaccagg catgggacac aacaccaata gcaagaaaca cacccatatg ggacaaagtt 4860 ccagacacag acagaaacac tatgctagat tcggctgatg gcacactacc gatgccacat 4920 ccacctggta ctatctttgt aaaagttgca aaaataccaa taccaaccga aaacaatgca 4980 gatgcatatt tagatctata tgtaacagga caagtaacat gtacaataga atgggaagta 5040 gcaagattca agaccaaaaa ctggagaccg gaaatcagaa catctgcaac aatgttttca 5100 gacccaaaaa tatactctgt caatgccagt ggtgtataca atacaccaga aaccttcaca 5160 gaatctatgc caacaaaatg gggaatcaac aaagttctgt aaaaataaaa ttacatcatt 5220 catcaaactg tacgtgtcac gtgagttttc ttttgcgcgc caaaaaatct ttcgttgatc 5280 tctatactct tatacaacac cctccacact gctacgtcag tgtgtatgag a 5331 //