ID   JQ692580; SV 1; linear; genomic RNA; STD; VRL; 1899 BP.
XX
AC   JQ692580;
XX
DT   06-JUN-2013 (Rel. 117, Created)
DT   06-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate VNM segment S9, complete
DE   sequence.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1899
RA   Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.;
RT   "The complete genome sequence of Southern rice black-streaked dwarf virus
RT   isolated from Vietnam";
RL   Plant Pathol. J. 28(4):428-432(2012).
XX
RN   [2]
RP   1-1899
RA   Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.;
RT   ;
RL   Submitted (22-FEB-2012) to the INSDC.
RL   State Key Laboratory of Agro-Biotechnology, College of Biological Sciences,
RL   China Agricultural University, Yuanmingyuan West Road 2#, Haidian, Beijing
RL   100193, China
XX
DR   MD5; 5ce31a148986874cce5840557c0a9985.
DR   EuropePMC; PMC4379580; 25807053.
XX
CC   GenBank Accession Numbers JQ692572-JQ692581 represent sequences
CC   from the 10 segments of Southern rice black-streaked dwarf virus.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1899
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /segment="S9"
FT                   /host="rice"
FT                   /isolate="VNM"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Thua Thien Hue"
FT                   /collection_date="12-Aug-2011"
FT                   /db_xref="taxon:519497"
FT   CDS             52..1095
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /db_xref="InterPro:IPR009268"
FT                   /db_xref="UniProtKB/TrEMBL:R9QRV6"
FT                   /protein_id="AFZ65525.1"
FT                   /translation="MADLERRTFGSYKIEELTIRNDQPTRNTNLSLSQSTENRLSTKKI
FT                   PLLDDGIFELLNYLIDGTNFNKTCYCGFNYSHLPNLERDFNIASLYVRENFEICTDQLD
FT                   LANYVRQPNISIKSPDFTVCLEYVLKTVVESESSTKDQKDDESQKPTSTDSTKNEQEKK
FT                   FVEMSLLPLLNRESEESLTEEILEGEGAVVNVLKLFIKGFLMHLGENPNSYDRQLTVEK
FT                   YRPLLVSIVGYEYLVGTTVPEKKINHIYYQLATFDNYPFDLLRLQLFSLISTPTSILER
FT                   ITKEGLFKIITSNTLRGAPRQTVLFRGINGSESFLNIKRYRRFRTRIVGNADSVIKSDF
FT                   SSLKLDV"
FT   CDS             1159..1788
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:F5A192"
FT                   /db_xref="InterPro:IPR009650"
FT                   /db_xref="UniProtKB/TrEMBL:F5A192"
FT                   /protein_id="AFZ65526.1"
FT                   /translation="MNPQSSVNIDTYTFNCPFELAKIQIESAKPIMQDFSDFDEIFERP
FT                   LSDSELDDRVEKLELDIEAKVDPVVRRKYGKVGHIMLMIFSFLFFGIFKLTLKMFYHLF
FT                   RCVCCNPLIRGIFSVVCTVVFYIVIFTLIYLVYFFFGDQILAVYHSLTEMSDSGLINST
FT                   KIEEKVNNIIHEGSLFFGSVDPNTGHFQEVEKQVFNGGTVNYTLFH"
XX
SQ   Sequence 1899 BP; 589 A; 333 C; 323 G; 654 T; 0 other;
     aagtttttaa gcctggaact gacacattcc tgcaggaacg aacgcaagag aatggcagac        60
     ctagagcgta gaacgtttgg atcatataaa atagaagaat tgacaattag aaacgaccaa       120
     ccaacaagaa atacaaacct ttcactttct caatcgaccg agaatcgtct ttcaaccaag       180
     aaaattcccc tactcgacga cggcattttt gaacttttga actacctcat tgatggaacc       240
     aatttcaaca aaacgtgtta ttgtggattt aattattctc atctcccaaa tctagaacgt       300
     gactttaaca tcgcttcttt gtatgtacgt gaaaatttcg aaatttgcac agatcaattg       360
     gacttggcta actacgttcg acaaccgaac atcagcatta aatctcctga cttcacagtt       420
     tgtttggaat acgttttgaa aactgtcgtt gaaagcgaat cctcaactaa agaccaaaaa       480
     gatgatgaat cacagaaacc cacctccact gattcaacta agaatgagca agaaaagaag       540
     tttgttgaaa tgtctttgct tcctctgtta aatcgcgaat ctgaagaatc tttgactgag       600
     gaaattttag aaggtgaagg cgcagtggta aacgtactta aactattcat taaaggattt       660
     ttgatgcatt taggtgagaa tccaaattct tatgatcgtc aactaaccgt tgaaaaatat       720
     cgtccattat tggtttctat tgttggctat gaatatctag tcggtactac agttcctgaa       780
     aagaaaatca atcacattta ttatcaactt gcaacttttg ataattaccc atttgatctt       840
     ttaaggttac aacttttttc actaatttcc actccaactt caatattgga aagaataaca       900
     aaagaaggtt tgtttaaaat tattacatca aacactttgc gaggtgcccc acgtcaaact       960
     gttttgttca gaggtatcaa cggtagtgag tcatttttga acatcaaaag atatcgtcgt      1020
     tttagaacca gaattgttgg taatgctgat agcgttatta agtccgactt ttcttcactt      1080
     aaattggacg tttgatactt tacttcttgg tcaatttcat tgtatatcaa tggttgaaga      1140
     atttttcttt tctacattat gaacccacag tcttcagtta atattgatac gtataccttc      1200
     aactgtccct ttgaattagc aaaaatccaa attgaatccg cgaaaccaat tatgcaagat      1260
     tttagtgatt ttgatgaaat ttttgaacgt cctttgtctg attcggaatt ggatgatcga      1320
     gttgaaaaat tggaattaga tattgaagcc aaagtcgatc ctgtggtaag aagaaaatac      1380
     ggtaaagttg gtcatataat gttaatgatt tttagctttc ttttctttgg gatttttaag      1440
     ttaacgctta aaatgtttta tcatcttttt cggtgtgtat gttgtaatcc tttaattcga      1500
     ggaattttta gtgttgtttg tactgtagtt ttctacatag tcatttttac gcttatttat      1560
     ttagtttatt ttttctttgg tgatcaaatc cttgctgtat atcattcttt gaccgagatg      1620
     agcgattctg gtttaatcaa ctccaccaaa atcgaagaaa aggttaacaa catcattcac      1680
     gaaggttctt tattttttgg ttccgttgat cctaatactg gccactttca agaagtcgaa      1740
     aaacaagtgt tcaatggagg tactgtaaat tatactttgt ttcactaagt ttctatttta      1800
     tgtgactctg aaaatattca cgctcgtaag tcgattttct tgcagttgtg tatacgctac      1860
     ccaacaaatt cgttctcaag ccggcttaca gctgatgtc                             1899
//