ID   JQ692578; SV 1; linear; genomic RNA; STD; VRL; 2176 BP.
XX
AC   JQ692578;
XX
DT   06-JUN-2013 (Rel. 117, Created)
DT   06-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate VNM segment S7, complete
DE   sequence.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-2176
RA   Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.;
RT   "The complete genome sequence of Southern rice black-streaked dwarf virus
RT   isolated from Vietnam";
RL   Plant Pathol. J. 28(4):428-432(2012).
XX
RN   [2]
RP   1-2176
RA   Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.;
RT   ;
RL   Submitted (22-FEB-2012) to the INSDC.
RL   State Key Laboratory of Agro-Biotechnology, College of Biological Sciences,
RL   China Agricultural University, Yuanmingyuan West Road 2#, Haidian, Beijing
RL   100193, China
XX
DR   MD5; 7a1b4c9b20e05947e3a7bf834e449be4.
XX
CC   GenBank Accession Numbers JQ692572-JQ692581 represent sequences
CC   from the 10 segments of Southern rice black-streaked dwarf virus.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2176
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /segment="S7"
FT                   /host="rice"
FT                   /isolate="VNM"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Thua Thien Hue"
FT                   /collection_date="12-Aug-2011"
FT                   /db_xref="taxon:519497"
FT   CDS             41..1114
FT                   /codon_start=1
FT                   /product="P7-1 protein"
FT                   /note="ORF7a"
FT                   /db_xref="InterPro:IPR010521"
FT                   /db_xref="UniProtKB/TrEMBL:E4WKX1"
FT                   /protein_id="AFZ65528.1"
FT                   /translation="MDRPAREHLKFSKANTKNEIQEMRIYKDDTANGLCFSEINVGCTS
FT                   TSPKMALSDYFSSVSCSFDGEMRTPDLPLHLYGDLHFHDQFTNDVDLDLLCWQLLSSNQ
FT                   DSRALCVNILRMLTALSLGNAFISEGRYHYALDTTETTSSEDVDALRLLSRLAKIVIKN
FT                   NLKSEDVTLAQQNLIYYYFGTSFKGIHLNWDSRSSQPSVHGYSTSENCLDHYIRMKIDL
FT                   FQGIRDKNQVYGGNYQLVYQALFYYYVITNGRFSSGFSVRKDSINSYFIPNENPSTCNV
FT                   SPRKPSLSLMFIRAILITILIKDYSSVKEVPKYLRQLEVEHPLNNACLITDSGVRSEVP
FT                   IVKESPGTLPVFESPSS"
FT   CDS             1166..2095
FT                   /codon_start=1
FT                   /product="P7-2 protein"
FT                   /note="ORF7b"
FT                   /db_xref="InterPro:IPR009519"
FT                   /db_xref="UniProtKB/TrEMBL:E4WKX2"
FT                   /protein_id="AFZ65529.1"
FT                   /translation="MNYNDANDSYQLNHVTSLEFDPLDPEVNLISQDFDDYDYHDLEVN
FT                   SLSEDLSDMNLMATRIKNFPDDTFEVFESLDAPPPLASLIYSEVSDEWCDIDNFLDIRV
FT                   VNDESQFEFVNSHINSRLLITLNSNPNILWTAVGLLTKISLLQEFENFEILNYWQAMER
FT                   RWDLMNDDLKIGFVFRAFDLKQNQFELLTKLLGDSLFFAGINLIGKSSMLPMLTVHSIS
FT                   DYIDHWFPTECYSSDNFMSFIKCHTITVPKWKKIVVQFYLRQIFSRSRTQVLMAHVDID
FT                   HWYDVFMKTLVFKSMRKTKKMLKNILNL"
XX
SQ   Sequence 2176 BP; 696 A; 334 C; 378 G; 768 T; 0 other;
     aagttttttt cgacctgtct ggaccagaac ataaaagaac atggatagac ctgctcgaga        60
     acatttaaaa ttcagtaaag cgaacactaa aaacgaaata caagaaatga gaatttacaa       120
     agacgacact gcaaatggat tatgtttcag cgaaattaac gtaggatgca cttccacttc       180
     acccaaaatg gctctttccg actacttcag ttccgttagt tgtagttttg atggcgaaat       240
     gcgtactccc gaccttcctt tacatttata tggtgatctt cattttcacg accaatttac       300
     taatgacgta gatttagatc tactttgttg gcaattattg agttccaatc aagattcaag       360
     agctttgtgt gttaatattt taagaatgct aactgcactt tctttaggaa acgcttttat       420
     ttcggaagga cgataccatt atgcacttga cactactgaa accacttcat ctgaagatgt       480
     cgacgcacta cgattactat cacgtttagc taaaatagtc attaaaaata atttgaaaag       540
     cgaagatgtt actttagctc aacaaaattt aatttattat tattttggca ctagctttaa       600
     aggcattcat ttaaattggg attctagatc tagtcaacca agcgtacatg gatattctac       660
     ttctgagaat tgcctcgatc attacattcg tatgaaaatt gatttgtttc aaggtataag       720
     ggataaaaat caggtttatg gtggtaatta tcaattagtg tatcaagctt tgttttatta       780
     ttacgtaatt actaatggtc gtttttctag tggttttagt gtacgcaaag atagtatcaa       840
     cagttatttt atacctaatg aaaacccatc tacctgtaac gtgagtccac gtaagccaag       900
     tttgtcgctg atgtttattc gtgctatatt aattaccatt ttaatcaaag attacagctc       960
     tgtcaaagaa gttcctaaat atctgcgtca gctagaagtt gaacacccat tgaataacgc      1020
     ttgtctaatt actgacagtg gagttagatc tgaagtccct attgttaaag aatctccagg      1080
     tactttacct gtttttgaat ctccatcatc ttaactctat ttctttatta ttataagttt      1140
     taaagatata atcatcagtg attaaatgaa ttacaacgat gccaatgact cgtatcaatt      1200
     aaatcacgtc acttctttgg aatttgatcc tttagatcca gaagtcaatt taattagcca      1260
     agactttgat gattacgatt atcatgattt ggaggtaaat tctttaagtg aagatttaag      1320
     tgatatgaat ctaatggcaa cgagaattaa aaactttcct gatgatacat tcgaggtatt      1380
     tgaatctcta gacgctcctc ctcctttggc ttcgttaatc tattccgaag ttagtgatga      1440
     atggtgcgac attgacaatt ttttagatat tagagttgta aatgatgaat ctcaatttga      1500
     atttgttaat tcccatatta acagtcgttt attaattacg ctaaattcaa atcccaacat      1560
     tttgtggact gcagttggtc ttttaactaa aatttctctc ttacaggaat ttgaaaattt      1620
     tgaaatttta aattattggc aagcgatgga aagaagatgg gatttaatga atgacgattt      1680
     aaaaatagga tttgttttta gagctttcga tttgaaacaa aatcaatttg agttacttac      1740
     gaaattatta ggggatagtt tattttttgc tggcattaat ttaattggta agtcaagtat      1800
     gttaccaatg ttaacagtgc attcaatttc tgattacata gatcattggt ttcctacaga      1860
     atgttattca agtgataatt tcatgtcttt tattaaatgt cacacgatta ccgttcctaa      1920
     atggaagaaa attgtcgttc aattttattt acggcaaata tttagtagaa gcagaacgca      1980
     agtattaatg gcacatgtgg atatagatca ttggtatgat gtttttatga aaaccttggt      2040
     ttttaagagt atgagaaaaa cgaaaaagat gttgaaaaac attctgaatt tgtaatgtct      2100
     cgtcgaggtg gtatgtcctg tttttaatgt tggtggaatc tcagacatgt gtcaaggtcg      2160
     aaatgcagct gatgtc                                                      2176
//