ID JQ692577; SV 1; linear; genomic RNA; STD; VRL; 2650 BP. XX AC JQ692577; XX DT 06-JUN-2013 (Rel. 117, Created) DT 06-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate VNM segment S6, complete DE sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-2650 RA Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.; RT "The complete genome sequence of Southern rice black-streaked dwarf virus RT isolated from Vietnam"; RL Plant Pathol. J. 28(4):428-432(2012). XX RN [2] RP 1-2650 RA Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.; RT ; RL Submitted (22-FEB-2012) to the INSDC. RL State Key Laboratory of Agro-Biotechnology, College of Biological Sciences, RL China Agricultural University, Yuanmingyuan West Road 2#, Haidian, Beijing RL 100193, China XX DR MD5; ce8dd715dc364f7ded494b8b7a376e30. XX CC GenBank Accession Numbers JQ692572-JQ692581 represent sequences CC from the 10 segments of Southern rice black-streaked dwarf virus. XX FH Key Location/Qualifiers FH FT source 1..2650 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="S6" FT /host="rice" FT /isolate="VNM" FT /mol_type="genomic RNA" FT /country="Viet Nam:Thua Thien Hue" FT /collection_date="12-Aug-2011" FT /db_xref="taxon:519497" FT CDS 81..2462 FT /codon_start=1 FT /product="P6 protein" FT /function="putative supressor of RNA silencing" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:R9QRI2" FT /protein_id="AFZ65527.1" FT /translation="MSTNLTNIAMLKKRLQRRVTTNTSVNNEVENTPSQPLEPVANASS FT SSESSVITKRYARPSNKISSSSTVAENSDDTKLLHNLISAAPNASVLMKPNTDVLNLSK FT TQTILPSLVVNATCQLKLKDLNDWKGFVLCHPNSPQSSVSSTLYTGNKLFVVFQKKNVQ FT NDDSEFKMMMKDKALTFLDSNVFKPKSKEFMTSLYNASSNVIITDSELEFDDLSNLKIC FT FSPSDIPSLTSLHKRMIKFSFWPSNILIPHLTEIVNHFETLKLAHFEDIELDSSNAESS FT LFIVSNNKFSEQSENVLQFIDAQPNSQLLINKINDMNERFGSLANGTHFMIGTVPSKSE FT LDDDKKKNLFGSNHVILMVNPVNILFDTTQLYFLLFSYLNKFVMQASIVQVFTTDLVNH FT GDMFSVAFNVIKCFYDSISCTLINHVIEDEVDVQKRVLMTVNDLSDDIKEFIPPNATST FT EDSETDNKRVENEIKALIKFDSQKQQTSTSKTPEVQEQQRSWADVVERTECDVEKTSSI FT ALNDVIKNMTYEDFVTNAKLIEFARRYSDETGEAHKLKVEMTRLSEENGQLLNAIKHNE FT ACIIQNNEEILNLREQSDRLTISLKQLDDAYSELVKEKDEVKTERDAFEAKLQEANKVI FT VEKTTRLNEAIDELEKAEDRNSSVVEEEPDNTEHRNDGFSLFGECLDKVRLLKNKYPHL FT YSGVDANFGDLTSLLRMLLIKIDSITSLCDANVTVSENQWSAYGLCSLTSSTHDNATTE FT MLSVNQVGLMNFQVANFTNIVYDVLFYNMFIKFLWQLSSE" XX SQ Sequence 2650 BP; 856 A; 548 C; 464 G; 782 T; 0 other; aagttttttg agtctgagat actgttatcc attgcgaacc tgagaacgag tttaacagaa 60 tctcacaccc agaaacaacg atgtctacca acctcacgaa catagccatg ctgaaaaaac 120 gattgcaaag acgagtcacc actaacacct ctgtcaacaa tgaagtcgag aacactccat 180 cccaaccact cgaacctgtt gcgaacgctt cttcttcttc agaaagctcc gtcattacca 240 aacgttacgc ccgtccatct aacaaaattt cttcttcatc tacagttgcc gagaattcag 300 atgatacgaa actgctccac aacttgattt ccgcagcgcc gaatgcttct gtgcttatga 360 aaccaaacac tgacgtactc aatctgtcta aaactcaaac tatccttcca tctttagtag 420 tgaatgcaac ctgtcaactg aaattgaaag atttgaatga ttggaaaggt tttgtactgt 480 gtcatccaaa ttctccccaa tctagcgttt cttccacttt gtataccgga aataaactgt 540 ttgtcgtatt ccagaaaaag aacgttcaaa atgatgattc tgaatttaag atgatgatga 600 aagataaagc tctcactttc cttgattcaa atgtttttaa accgaaatcg aaagaattca 660 tgacttctct ttacaacgcg tcttcaaatg tgatcatcac cgactctgaa ttagaatttg 720 atgatttgag caacttgaaa atctgttttt ccccttccga cattccaagt ttgacttctc 780 ttcacaaaag aatgatcaaa tttagttttt ggccaagtaa cattttgatc cctcatctca 840 ctgaaattgt caaccatttc gaaactttga aacttgcaca ttttgaagac attgaacttg 900 actcttcaaa cgcagaatct tctctcttta tcgtatcaaa caacaagttt tctgaacaaa 960 gtgagaacgt acttcaattt atcgatgctc aaccaaattc acaacttctg atcaacaaaa 1020 ttaatgacat gaacgaacgt tttggttcac tggcaaacgg cactcatttc atgattggaa 1080 ctgtcccttc gaaatctgaa cttgacgatg ataagaaaaa gaacttgttt ggatcaaatc 1140 acgtcatcct gatggtcaat cccgttaaca ttctttttga cacaactcaa ttgtacttcc 1200 tgctgttttc ttatctgaat aaatttgtaa tgcaagcttc aattgttcaa gttttcacaa 1260 ctgatctggt caaccatggt gatatgtttt cagtagcttt caatgttatc aaatgctttt 1320 acgattccat cagttgcacc ctcattaatc acgttattga agatgaagtt gacgttcaaa 1380 aacgtgtgtt gatgacagtt aatgatttgt ctgatgacat taaagagttt attcctccca 1440 acgccacatc tacggaagat tctgaaactg acaacaagcg tgtagaaaac gaaattaagg 1500 cattgatcaa attcgactct caaaagcaac aaacatcaac gtcaaaaaca ccagaagttc 1560 aagaacagca acgttcatgg gccgacgtag ttgaaagaac agaatgcgat gtcgaaaaga 1620 cttcttccat tgctcttaat gatgtgatca aaaacatgac atacgaagat tttgtcacga 1680 atgctaagtt gatcgaattt gcaagacgat actctgatga aacaggcgaa gctcacaaat 1740 tgaaagtcga aatgacacgc ttatcagaag aaaatggtca acttttgaat gccatcaaac 1800 acaacgaagc ttgcatcatc caaaacaatg aagaaatttt gaatttgaga gaacaaagtg 1860 atcgtttgac tatcagcttg aaacaacttg acgacgctta ttctgaactg gtgaaagaga 1920 aagatgaagt taaaactgaa agagatgcgt ttgaagcgaa attgcaagaa gcgaataaag 1980 tgatcgttga gaaaactact cggttgaacg aagcgattga tgagttggaa aaagctgaag 2040 acagaaacag ttccgttgtc gaagaagaac ctgacaatac tgaacatcgt aacgacggtt 2100 tctcgctttt tggtgaatgt ctcgataaag tgcgtcttct caaaaacaaa tatcctcatc 2160 tttattctgg cgtagatgct aactttggcg atctgacttc actattgcgt atgcttttga 2220 tcaagattga tagtatcact tcactttgcg atgcgaacgt tactgtgtct gagaaccaat 2280 ggagcgcgta tggattatgt agtttgactt cctcaacgca tgacaatgcc acaactgaaa 2340 tgctgtctgt aaatcaagtc ggtttaatga atttccaagt tgcgaacttc accaacatcg 2400 tttatgacgt ccttttttac aacatgttca ttaagttttt gtggcaactt agttcagagt 2460 aatgaacaaa taatcatgaa tgacatctcg tattaacatc tgcgcactaa cacctagctg 2520 atttgagtta ttacaccatc tttaacggac agagatctca tgttgaactg gattatcggt 2580 attcgtgatg gtaagtcagt tttctctatt cgtcaccttg ctcggcaaga gactcaaatc 2640 agctgatgtc 2650 //