ID JQ692576; SV 1; linear; genomic RNA; STD; VRL; 3167 BP. XX AC JQ692576; XX DT 06-JUN-2013 (Rel. 117, Created) DT 06-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate VNM segment S5, complete DE sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3167 RA Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.; RT "The complete genome sequence of Southern rice black-streaked dwarf virus RT isolated from Vietnam"; RL Plant Pathol. J. 28(4):428-432(2012). XX RN [2] RP 1-3167 RA Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.; RT ; RL Submitted (22-FEB-2012) to the INSDC. RL State Key Laboratory of Agro-Biotechnology, College of Biological Sciences, RL China Agricultural University, Yuanmingyuan West Road 2#, Haidian, Beijing RL 100193, China XX DR MD5; dd2eb7551e15c36e3c7e2000713e8ebe. XX CC GenBank Accession Numbers JQ692572-JQ692581 represent sequences CC from the 10 segments of Southern rice black-streaked dwarf virus. XX FH Key Location/Qualifiers FH FT source 1..3167 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="S5" FT /host="rice" FT /isolate="VNM" FT /mol_type="genomic RNA" FT /country="Viet Nam:Thua Thien Hue" FT /collection_date="12-Aug-2011" FT /db_xref="taxon:519497" FT CDS 16..2835 FT /codon_start=1 FT /product="P5 protein" FT /note="ORF5" FT /db_xref="GOA:R9QRF8" FT /db_xref="UniProtKB/TrEMBL:R9QRF8" FT /protein_id="AFZ65523.1" FT /translation="MTYLKVKMTTDPSEMSLKKVLFNPTNEIRILNHEQADNTLLTTLM FT IIHDFEDTHTRDSILPQIVNEEKAEFDRTIESILEEVSDAFVANYHKILEENAKLGNPL FT APNYKNVVSVETCIPGLEKLFVDRERWELFTRLYRLDRKMSQKYPLEKMLKGNFLNISI FT SDETYYEYVSAMIIVFEVFLCVITVNSVYGGLIFSALNLMSGGHNYIPILGLLLHAIVQ FT AVKIYLDKSAANQIEEKTTSYVDKVTNNDVKDVMIDDTMFIFVDKPKEPIFQNFDISLK FT VHTHKSSAFQPFKTGFNALLTKIIRIHKIKGEILKVGYIDGISRDELIGASGKKLSYSE FT RHAIGIKYDQETKTLFISHPILRDAFERLNKLSLLHDNLLLKDDFANIPSDFFTVDFNE FT PDSVSDYVVPFLNNADLKFSTQMSYNWRSINTEKRPYCFLKEGTSMNVYDPIFECFFPN FT HFIKIVKKDAITIDPTKVVTEDDMIHFGRLVERHEDLTYNKTTAYSILKFLKENCHSCG FT CSEYFANFVSDYLTSIDVLSHMKDSKLSKVEYHLKQEYENLFKKTKRQELSRTPIAEHS FT DFLSQCAYNESFFDIDFCFLEDGDCHSLVIRFAKRKPYFRFKDENLEKLNVLSLYDLVV FT NCNHGELSSSSRVGWNLVDIDNMGSDDNLNRTIRRTNSKPRHFTYDLMMITFTGSVTQY FT LIPEWLGESLTVYEEKHEGARLFEKSSLFSTLSCIPATFLANHILIECLEKSSNKLISF FT MDGVISAMSTSIEFSTFKNTMLNNLKRCTQASEMNVAKQSPIAGTSRNKSFRSYLRSSR FT PNHVYDALSYCISKKQNGLFTSEEMCMSYNLRSFGKVGVDYSNGELSYDISSREELYNN FT HPCALRLRNLGHFVFGKHFRCKVCRNNYGTSFELSLCQLGHQETAIEAVRSNTITSQIR FT AKLQPTTAR" FT CDS 2459..3076 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF5b" FT /db_xref="UniProtKB/TrEMBL:H9BJU8" FT /protein_id="AFZ65524.1" FT /translation="MSMTRCPIVSPRNRTGCSHQKKCACLIISDHLEKWELTIATVNCH FT MISRQEKSCTTIIPVRFDLEISDILSLENILDAKYVATITELALNFPCVNWDIKKQQLK FT QFDPTQSLVKLEQNFNQLQRDDKLHFNCCYNYPTLHILNRILNVSKDVIPFLFDHNHNA FT NNKTMSDLSSTLNNCRDMKVSEKHHLLRTLLFGSTLGVILHV" XX SQ Sequence 3167 BP; 993 A; 631 C; 572 G; 971 T; 0 other; aagttttttt cactcatgac atatttgaaa gtgaagatga ccacagatcc ttccgaaatg 60 tctctgaaaa aagtgctttt taacccaacg aacgaaatcc gaattctcaa ccacgaacaa 120 gcagacaaca ctcttttgac cacactgatg attattcacg actttgaaga cacccacact 180 cgtgactcaa ttctgcccca aattgtcaat gaagaaaaag ccgaattcga ccgaactatt 240 gaatccattc ttgaagaagt tagcgatgcc tttgttgcta attatcacaa aattctcgaa 300 gaaaacgcga aattgggtaa ccctcttgct ccaaattaca aaaacgtcgt gtctgtagaa 360 acatgtattc caggtcttga aaaacttttt gttgatcgcg aaagatggga actgtttacc 420 cgtttgtatc ggctagatcg aaaaatgagt caaaaatatc ctctagagaa gatgctaaaa 480 ggcaatttcc ttaacatttc catttccgac gaaacttatt atgagtacgt ttccgctatg 540 atcatagttt ttgaagtgtt tctttgtgtt ataactgtca acagtgttta cggtggcttg 600 atctttagtg ctttgaactt gatgagcggc ggacataact acattcctat tcttggccta 660 cttttacatg ctattgttca agctgtaaaa atttatttgg ataaatcagc tgcgaatcaa 720 attgaagaaa agactacttc ctacgtagac aaagtgacaa acaacgacgt taaagacgtt 780 atgattgatg acaccatgtt tatttttgtt gataaaccga aagaaccaat attccaaaat 840 ttcgacatca gtctaaaagt tcatactcac aaatcatctg cttttcaacc ttttaaaacc 900 ggtttcaatg ctcttttaac taaaatcatt cgtattcaca aaatcaaagg tgaaattctc 960 aaagttggtt acattgatgg aatcagtcgt gacgaattga ttggcgcatc aggaaagaaa 1020 ctctcgtatt ctgaaagaca tgccattgga attaagtatg atcaggaaac caagacattg 1080 ttcatcagtc accccattct acgagatgct tttgagcgtt tgaacaagct ttcgctattg 1140 catgataacc ttctgttgaa agacgacttc gctaacattc cgtctgattt tttcactgtt 1200 gattttaatg agccagattc tgtcagtgat tacgtagttc ccttcttgaa taatgctgat 1260 ttgaagtttt ccactcaaat gtcttacaac tggagaagca ttaacacgga aaaaagacct 1320 tactgcttct tgaaagaagg aactagcatg aacgtttacg atccaatttt tgaatgtttt 1380 tttccaaacc atttcatcaa aattgtcaaa aaagacgcaa ttaccattga tcctacgaaa 1440 gttgtaactg aagatgacat gatccatttt ggacggttgg ttgaaagaca tgaagatttg 1500 acgtacaaca agactactgc ttattccatc ttgaaatttt tgaaggaaaa ttgccacagt 1560 tgtggttgtt ctgaatattt cgccaatttc gtttctgatt acttaacatc aatcgacgtt 1620 cttagtcaca tgaaggattc gaaattatca aaggtcgaat atcatctcaa gcaggaatac 1680 gaaaacttgt tcaagaagac aaaaagacaa gagctttcaa gaacgccgat tgctgaacat 1740 tcagatttcc tctctcaatg cgcatataac gagtctttct tcgatatcga tttttgcttc 1800 ctggaagatg gtgactgtca ttcactcgtc attcgattcg ctaaacgcaa accttatttt 1860 cgcttcaaag acgaaaactt ggaaaagctc aacgttctgt ccctgtacga tcttgttgtg 1920 aattgtaatc acggagaact ttcttcatct agcagagttg gatggaattt ggttgacatt 1980 gacaacatgg gatcagatga taacctcaat cgtaccattc gtcgtactaa cagcaaacca 2040 cgccatttta cttacgatct aatgatgatt accttcactg gctcagttac gcaatacctc 2100 atacctgaat ggcttggtga aagtttgacg gtttacgaag aaaaacatga aggcgctcgt 2160 ctttttgaaa aatctagctt gttttcaact ttaagctgca ttcctgcaac gtttttagca 2220 aatcacatac taatcgaatg tttagaaaaa agctcgaaca aactgatttc tttcatggat 2280 ggtgtgatca gtgccatgtc cactagcatc gaattctcga ctttcaaaaa taccatgctc 2340 aacaacttga aaaggtgtac acaggcttct gagatgaacg ttgcgaaaca gtctccaatc 2400 gcaggaacta gcagaaacaa gtcttttcgt tcctatttac gatcttctcg accaaaccat 2460 gtctatgacg cgttgtccta ttgtatctcc aagaaacaga acgggttgtt cacatcagaa 2520 gaaatgtgca tgtcttataa tctcagatca tttggaaaag tgggagttga ctatagcaac 2580 ggtgaattgt catatgatat ctcgtcaaga gaagagctgt acaacaatca tccctgtgcg 2640 cttcgactta gaaatctcgg acattttgtc tttggaaaac attttagatg caaagtatgt 2700 cgcaacaatt acggaactag ctttgaactt tccctgtgtc aattgggaca tcaagaaaca 2760 gcaattgaag cagttcgatc caacacaatc actagtcaaa ttagagcaaa acttcaacca 2820 actacagcgc gatgataagc ttcattttaa ttgttgttat aattatccta ctttacacat 2880 attaaaccgt attttaaatg tttctaaaga cgtaattcca tttttatttg atcacaatca 2940 caacgctaac aataaaacga tgtctgactt atcttctacg cttaacaatt gtcgtgatat 3000 gaaagtttct gagaaacatc acttacttag aactttactt ttcggaagca cgctaggagt 3060 tatacttcat gtttgagggt gtgttatccc tggctgcaag cgggaggcgc gtgaacaggt 3120 gttccacgtc ttcttagatg cgggggggag tgaatacagc tgatgtc 3167 //