ID JQ692575; SV 1; linear; genomic RNA; STD; VRL; 3571 BP. XX AC JQ692575; XX DT 06-JUN-2013 (Rel. 117, Created) DT 06-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate VNM segment S4, complete DE sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3571 RA Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.; RT "The complete genome sequence of Southern rice black-streaked dwarf virus RT isolated from Vietnam"; RL Plant Pathol. J. 28(4):428-432(2012). XX RN [2] RP 1-3571 RA Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.; RT ; RL Submitted (22-FEB-2012) to the INSDC. RL State Key Laboratory of Agro-Biotechnology, College of Biological Sciences, RL China Agricultural University, Yuanmingyuan West Road 2#, Haidian, Beijing RL 100193, China XX DR MD5; f285828b5352440ba24ef97d6fee8ae9. XX CC GenBank Accession Numbers JQ692572-JQ692581 represent sequences CC from the 10 segments of Southern rice black-streaked dwarf virus. XX FH Key Location/Qualifiers FH FT source 1..3571 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="S4" FT /host="rice" FT /isolate="VNM" FT /mol_type="genomic RNA" FT /country="Viet Nam:Thua Thien Hue" FT /collection_date="12-Aug-2011" FT /db_xref="taxon:519497" FT CDS 15..3455 FT /codon_start=1 FT /product="P4 protein" FT /note="ORF4" FT /db_xref="UniProtKB/TrEMBL:R9QRI1" FT /protein_id="AFZ65522.1" FT /translation="MLKVNVQALIYPFSGQITDIRRNQLIPTAKFKHTVLHQPIFITKL FT KNKFSSNDAPPTRNTLRVNPVWSNAIFDWNSALLNPWTVLPSPTGSGSMSIPSHKNVES FT GNAILKNAEFINERLPAYLKLLFDSLNLKENGYVNQFGFWALLYLDYSLHCLVPTEYYR FT QMLNLRTKENIIFLDTYNEVEYAISYLSRFNKILYVNGHGRKFVKLPSFGKLGFTFDKD FT TILGGIGNDLQYWTLWPLHNDYTQADTNRPNHANILRNLGQFNNELVGIHYYPTFFYEH FT YLYFETIQELVKHQIYNVVRTYHAQLKLQDNLGTNRLERRGYYLTAYSPFYELFIDAIA FT QEFGELYLYIQLFGAIPFNSGSPSGIPMTYSDFDSYYYRRFGHLKEFGKLTFENLTEKY FT NRSKLKPFQLFFVYDQMYQLMQTISPSLNLKPNLELIEFEEYGDGANLEDFDVNDVSAC FT RLIDYPLGDALPLNTLEVFPPNLFEVSEHIRMMFESRFLSPYAMYSLPLVPGGHDVLIQ FT TDESRLSDFRKNTAQRKVFKALQKQVLNSKNIFKKFVEPNLIKSSLSSADFLFWVVYSV FT ASSPKFTVNVKGELDVPPITADVDKLVYTSPNTSSFKLLSLFFQFLHEKTFVQLNQPMS FT IVFLGAKSEPVADMLYRLSHENWSIQRYGNDAEWPGKKANVLSINLKNVYDVAISDMDQ FT SIGSSVANITANTLRQLRVCLESFSKRLIFKLQYCLFHTLSSVTAILREYGAEIAASGH FT FIKLQIIRHAWSKVGSLEIFLIIDKVKTAESIPDDKELRKVVNTLGLSEPNQLFFTYMG FT TPRKYTLNDLNCKIFSVDITSEEMTNICSVFLNLSQCVSYGSSIYDKEHLNLTFFGTTN FT IQRIGLFMRNKQIYKALSITGREHKPEGIFTPSLDFVIPGVREVLVLGDAQRMVGWKML FT KALYFDKGVLDVSLTAYDIGCRDYECAYMTVIDDDTILNYVGYDRASVLDVKRGITVIK FT AEVNRDKLTELCGLGHVFAFNSYYMGFSTRDELEKELNYIADTLVIKGFFFISFYAMHD FT DLKPVLKHHGFIDITSADVAADKFTFGRYHAVATVSVDFVEEWKAKMMTKYDVYQIFLS FT ANDVSFSCIMHGYSVNLDSMYFAPVYNLVSPCFLIHPKK" XX SQ Sequence 3571 BP; 1108 A; 561 C; 649 G; 1253 T; 0 other; aagttttttt caggatgttg aaagtaaatg tgcaggccct catttatcct ttcagcggac 60 aaatcacaga cattagaaga aaccaactca ttccaactgc taaatttaaa cacactgtct 120 tacatcagcc tatttttatt acaaaactta aaaataaatt ctcatccaat gacgcccctc 180 caactcggaa tactctacga gttaatcctg tttggtcaaa tgctattttt gattggaatt 240 cagctttatt aaatccttgg actgtccttc cctccccgac tggctctggc tcaatgtcaa 300 ttccatcaca taaaaatgtt gaatcaggca acgcaatttt gaaaaatgct gaattcatta 360 acgaacgtct tccagcttat ttaaagctat tgtttgatag tttgaatttg aaagaaaatg 420 gatatgttaa tcaatttgga ttttgggctt tattatacct agattacagt ttgcattgtc 480 tcgtaccaac tgaatattat cgccaaatgt taaatctacg aacaaaggag aacataatat 540 ttttagacac gtataatgaa gtagaatatg caatttcata tttatctcga ttcaacaaaa 600 ttttatatgt taatggtcat ggtcgaaaat tcgttaaatt gccaagcttt ggaaaactag 660 gatttacttt tgataaagac accattctag gaggaattgg aaacgatctt caatattgga 720 cattatggcc tttacacaac gactatactc aagctgatac caacagacca aatcatgcga 780 acattttacg aaatttagga caattcaata atgagttagt tggtattcat tattatccta 840 ccttctttta tgaacattat ctttattttg aaaccattca agagttagtt aaacatcaaa 900 tatataacgt tgttcgtaca taccatgctc aattaaaatt acaagacaat cttggtacta 960 atcgtttaga aagaagaggc tactatttga ctgcttacag tcccttttat gaattattca 1020 ttgacgcgat agctcaagag ttcggtgaat tatatctcta tatacaactt tttggtgcta 1080 ttccttttaa cagtggaagt cctagtggta ttcctatgac ttactcagat tttgattcct 1140 attattatcg tagatttgga catttgaaag aatttggaaa acttactttt gaaaatttaa 1200 ctgaaaaata caatagatct aaactcaaac ctttccaact gttttttgtt tatgatcaga 1260 tgtatcaact gatgcaaaca atatctccta gtttaaattt gaaacctaat cttgagctta 1320 ttgagtttga agagtatggt gacggtgcta atttagaaga ttttgatgtt aatgatgtta 1380 gtgcatgccg gttgattgat tatcctttag gtgacgcatt acccttaaac actttagaag 1440 tattccctcc aaatttgttt gaagtttcag agcacattcg aatgatgttc gaaagccgtt 1500 ttctcagtcc ttatgcaatg tattctttgc ctttagttcc aggtggtcat gacgttttga 1560 ttcaaacaga tgagagtaga ttatccgatt ttcgtaaaaa cacagctcag aggaaagtat 1620 tcaaggcttt gcagaaacaa gttttaaatt ctaaaaacat ttttaagaaa tttgttgaac 1680 ctaatttaat aaaaagttcc ttgtcttcag ctgacttttt gttttgggtt gtttatagtg 1740 tagcatcttc accgaaattt acggtgaatg tcaaaggtga attagacgta cctccaatca 1800 cagcagacgt tgataaatta gtatacacat ctcctaatac ttcttctttc aaattattaa 1860 gcttattctt tcagtttttg catgagaaaa cttttgttca attaaatcaa cctatgagta 1920 tcgtctttct tggtgcgaag agtgaacccg ttgctgacat gttatatcgt ttatcgcatg 1980 agaattggag tattcaaagg tatggtaatg acgcggaatg gccaggtaaa aaagcaaatg 2040 ttctgtctat taatttgaaa aatgtgtatg acgtcgccat ttctgatatg gatcaaagca 2100 taggatctag tgttgcaaat attactgcga atactctaag acaattgaga gtttgtttag 2160 aatcatttag taaaagattg atttttaagt tgcaatactg tctatttcat actttgagtt 2220 cagtcactgc tattcttcgt gaatatggtg ctgagatagc tgcatcaggt cattttatta 2280 aattgcaaat cattcgtcat gcttggtcga aagtgggaag tttggaaata tttttgatta 2340 tagacaaggt taaaacagct gagtcaattc cggatgataa ggagttaagg aaagttgtga 2400 atactttagg attgagcgaa cctaatcaat tgttctttac atacatgggt acccctcgaa 2460 aatatacctt gaacgacttg aattgtaaaa tattcagcgt tgacataacc tctgaagaaa 2520 tgacaaacat ttgttctgta tttttaaatt tatctcaatg tgtcagttat ggttcttcca 2580 tttatgataa ggaacattta aatttaactt ttttcgggac gacaaatatt cagagaatcg 2640 gattgttcat gcgtaataaa caaatttaca aagctttgtc aattacaggt agagaacaca 2700 agccagaagg aatttttaca ccctcattag attttgttat tcccggtgtt cgagaagttc 2760 tagtcttagg agatgctcaa cgtatggttg gatggaaaat gctgaaggct ttgtattttg 2820 ataaaggtgt tcttgatgtc agtttaactg catatgatat tggttgtcgt gattatgagt 2880 gtgcttatat gactgttatc gatgatgata ctattcttaa ttatgtggga tacgatagag 2940 cttctgtgct ggatgttaaa cgtggaatta cagttattaa ggctgaagtg aacagagaca 3000 agttaactga attgtgcggt ttagggcatg tcttcgcttt taattcttat tacatgggtt 3060 tttctacgag agacgaattg gagaaagaat tgaattacat tgctgataca ttagtgataa 3120 aaggtttctt tttcataagt ttttacgcaa tgcatgacga tttaaaacct gtattgaaac 3180 atcatgggtt tatagatata actagtgcgg atgtggctgc agataaattc acttttggaa 3240 gatatcatgc cgtcgctact gtcagtgtgg attttgtaga agagtggaaa gcaaaaatga 3300 tgactaaata tgacgtttat caaatctttt tatcagctaa tgatgttagt ttcagttgta 3360 tcatgcatgg ttattctgtc aatttagata gtatgtattt cgcgccggtt tataacttag 3420 tttctccttg tttcttaatt catcccaaaa aatgaacttt taatgtttgt gcatgagtct 3480 tggaaggata tgagatactg tcacatgcgc tcttccctag ccttttaaca taccgtgttg 3540 tggcggatta aacctgaaaa cagctgatgt c 3571 //