ID JQ692574; SV 1; linear; genomic RNA; STD; VRL; 3618 BP. XX AC JQ692574; XX DT 06-JUN-2013 (Rel. 117, Created) DT 06-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate VNM segment S3, complete DE sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3618 RA Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.; RT "The complete genome sequence of Southern rice black-streaked dwarf virus RT isolated from Vietnam"; RL Plant Pathol. J. 28(4):428-432(2012). XX RN [2] RP 1-3618 RA Dinh T.-S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.; RT ; RL Submitted (22-FEB-2012) to the INSDC. RL State Key Laboratory of Agro-Biotechnology, College of Biological Sciences, RL China Agricultural University, Yuanmingyuan West Road 2#, Haidian, Beijing RL 100193, China XX DR MD5; 67e312d541b3ba1a219a012fb2ad6f9b. XX CC GenBank Accession Numbers JQ692572-JQ692581 represent sequences CC from the 10 segments of Southern rice black-streaked dwarf virus. XX FH Key Location/Qualifiers FH FT source 1..3618 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="S3" FT /host="rice" FT /isolate="VNM" FT /mol_type="genomic RNA" FT /country="Viet Nam:Thua Thien Hue" FT /collection_date="12-Aug-2011" FT /db_xref="taxon:519497" FT CDS 34..3543 FT /codon_start=1 FT /product="P3 protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:R9QSM1" FT /protein_id="AFZ65521.1" FT /translation="MDPVQVIKYLLSQNYETKLQQLEQWQQQMQAAGFTTEYLQRSSNV FT LNIRRRIEESRRRLFEISAKLWQGSLFTKTISPNNLFLGFSECSGVNKSLFDSKNCDFG FT RFSLNFHCIPKYWILSGIFNDLVCYDHHNVKVTVSKSSNKISFRINDFIYIVPTISNFS FT FLSDNPDIKIDENCAFDVFVRIFQSLSDVVIDVCNFTFNDELLNVEWKNTIIRFAGDAN FT YFSVSSNLIFNSIDDYLGRKCTSMRDYFCYAISMNNLEMINDSLNNWESKQLSHKKNLV FT NSLHQMNLNSMIKISSLEKEVARVKTLKISLSYPRTICLHIPTHKLFINKYSHDLFSSV FT FKTQFVGWNFTYGERDRTVEPFICDVETKLKTNSSIVSTASTSHFQCNDFGSPDNMFLL FT NVLDKDGNVKKVICEAVFSLKYKEFKYLGVKSFDEKTGYQSQVYFFGLSEIRLYTESPK FT LQVLSLVSEHEGKLCHVFYATTSLILSFKILAENIEYLGVTSPQFTSEFSYNGKPLKLS FT GKLTLSEEFDVAQRRKCLTSEEFVLNEDVKCVFTSFICNGQRSTTKTFYNNKPWPGIRS FT RYHDNDSYSSVIQATCHTLILNSPFRAYNNYSDILYSANDNVHYVEADGCFTERKNYLY FT WEVPISKFDMIYDDDPCVKLSNKSILTIPVTYRAFFEEVEGKFHPCLLSEVHSIYDYSV FT TQIGDAPELFLPFNKPVDIIYMEQSDGDEVSGELKIISFDVKDFNAYVLPENLNTTMNI FT VGRLLDYESELELVYQTNNVLSDMMNNFEKRLSDLEKFCAFLEKSYNKKSGDSSSLYHL FT LGDMFTFVGEICVLQFPILGFCFILTGIMVDAIGKITQEDIFDGISEIAFGGLLLCLGK FT RKPKFAYLQELGLDRRRASSNSYISDLASSIGRRRSYSSYHRYESINELSPSLSIKDRI FT FNQIRAHNPSVFDLHHNSGIILELKQKQKDNYSLLNSSYSRMKRSIGSTFHDDNLNYKL FT SCNNPESCELYELIVTTFDYYPILLNDNSFMIIKVQFKMRITSKPIMMKIEDIMFKYFH FT TSDSLGFNVFDESKYNDVKHLYDYFLRFSFDEIFNYLCVLSLLSKTSSFDNILVENFDK FT IYDTLYLTNHNSYMKNDAIHLRQVDSTIYKTMHGHSFSDQVPNESYFKMISTIVSHPEI FT LRF" XX SQ Sequence 3618 BP; 1188 A; 551 C; 601 G; 1278 T; 0 other; aagtttttat ccatgtcttt gaattgaaca gggatggatc cagtacaagt catcaaatac 60 cttttgtctc aaaattatga aaccaaatta caacaactcg aacaatggca acaacaaatg 120 caagcagcag gcttcacaac agaatactta caacgatctt cgaacgtgct aaacattaga 180 cgcagaattg aagaatctag aaggcgttta ttcgaaatca gtgctaaact atggcaaggt 240 agtctattta ctaaaaccat ttctcctaat aatttatttc tcggcttcag tgaatgctca 300 ggagtgaaca aatcgctttt tgattctaaa aattgtgatt ttggaagatt cagtttaaac 360 tttcattgca tacctaaata ttggatatta tctggaatat ttaatgattt agtttgttat 420 gatcatcata atgtcaaagt cacagtaagc aaatcgtcaa ataaaatatc atttagaata 480 aatgacttta tttacatagt tccaaccata agcaacttct catttttatc tgacaatcca 540 gatatcaaga ttgatgaaaa ctgcgcattt gacgtatttg tacgaatttt tcaatcatta 600 agcgatgttg ttatagacgt ttgtaatttt acatttaacg atgaattatt gaatgttgaa 660 tggaaaaaca caatcattcg ttttgccggc gatgctaact atttctcagt ttcttcaaac 720 ctcattttca atagtattga cgattattta ggtagaaaat gcacttcaat gagagattat 780 ttttgttacg caattagtat gaataacctg gaaatgatta atgactcctt aaataattgg 840 gaatccaaac aactgtcaca taaaaagaat ttagtaaaca gtcttcatca aatgaatctt 900 aattcaatga ttaaaatttc ttctttggaa aaggaagttg ctagagttaa gacgttaaaa 960 atatccttaa gttatcctcg tacgatttgt ttgcacattc cgacgcataa gctttttatt 1020 aataagtatt ctcatgactt attttcttca gtttttaaaa ctcaatttgt tggttggaat 1080 tttacatatg gtgaaagaga tagaactgtt gaacctttca tttgtgatgt tgaaacaaaa 1140 cttaaaacga attcttctat agtaagtaca gcatcaactt ctcactttca atgtaatgat 1200 tttggcagtc ctgataacat gtttttgcta aatgttttag ataaggatgg taacgttaaa 1260 aaagtaattt gcgaagctgt gttttcatta aagtacaaag agtttaaata tctgggagtt 1320 aaatctttcg atgaaaaaac aggatatcaa agtcaagttt atttctttgg tttgagtgaa 1380 attaggcttt atactgaaag tccaaagttg caggttcttt cattagtgag tgaacatgaa 1440 ggtaaattat gtcatgtatt ttatgcaact acttctttaa ttttatcttt caaaattctg 1500 gctgaaaata tcgaatattt aggagtcacg tctcctcaat tcacaagcga atttagttat 1560 aatggcaaac cattgaaact tagtgggaaa ttaactttaa gtgaggaatt cgatgtagct 1620 caaaggagga aatgcttgac ttctgaagaa tttgttttaa acgaagatgt taaatgtgtg 1680 ttcacctcat ttatatgtaa cggtcaacgc tcgacaacca aaacattcta taacaacaaa 1740 ccttggcctg gtattcgtag cagatatcac gataatgatt cttattcaag cgtcattcag 1800 gcgacctgtc acactttaat cttaaattca ccttttcgtg cttataataa ttatagtgat 1860 atattatact cggcgaatga taatgtacat tatgttgaag cggatggttg ttttactgaa 1920 aggaagaatt atctctattg ggaagttcca atttcaaagt tcgacatgat ctacgacgat 1980 gatccttgtg ttaagttgtc aaacaaaagc attctcacca ttccagtaac atatcgcgct 2040 ttctttgaag aagtggaagg taaatttcac ccttgtcttt tatctgaagt acattccata 2100 tatgattatt ctgtgactca aattggtgac gctccagaat tatttcttcc tttcaataaa 2160 ccagttgata ttatttacat ggaacagtct gacggggatg aagtcagtgg ggagttaaaa 2220 attatatctt ttgatgttaa agactttaac gcttatgttt tacccgaaaa tctcaatacc 2280 actatgaata ttgtaggaag gttgttagat tatgaatctg aattagagct agtataccag 2340 actaataacg tcttgtccga tatgatgaat aattttgaaa aacgactatc tgatttagaa 2400 aaattttgcg cctttctcga aaaaagttat aacaaaaaat cgggtgattc ttcttctttg 2460 tatcatttgt taggtgacat gttcactttt gttggtgaaa tttgtgttct tcaatttcct 2520 attttagggt tttgtttcat tttgactggt ataatggttg atgctattgg aaaaattact 2580 caggaggata tattcgatgg gattagcgaa attgcatttg gaggcttact actttgttta 2640 ggtaaaagaa aacctaaatt tgcatacctt caagaacttg gtttagatag acgacgtgct 2700 tcctcgaatt cttatattag tgatcttgcg tcttctatcg gacgtcgaag aagttattct 2760 agttatcata ggtatgaaag tattaacgaa ttgagtcctt ctctttctat aaaagaccga 2820 atttttaatc aaattcgagc acataatcct agcgtgttcg acttgcatca taattcaggt 2880 attattttag agttaaagca aaaacaaaaa gataattatt ctctcttaaa ctctagttat 2940 tcacgtatga agagatctat tggtagtacg tttcatgatg ataacctcaa ttacaagtta 3000 tcgtgtaata atccggaatc atgtgaattg tatgaactga tagtcactac ttttgattac 3060 tatccaattc tattaaatga taactctttc atgatcatca aagtccagtt taaaatgaga 3120 attacttcca aacctattat gatgaaaatt gaagacatta tgtttaaata ttttcacact 3180 agtgattccc ttgggtttaa cgtttttgat gaaagtaaat ataatgatgt taaacatctt 3240 tatgattact ttcttagatt tagttttgat gagatattta actatttgtg tgtcttaagt 3300 ttattatcta aaacaagctc atttgataac atcctggttg aaaatttcga taaaatttac 3360 gacactcttt atctcacgaa tcataattca tacatgaaga acgatgccat tcatttacgt 3420 caagtcgatt ctacgattta taaaaccatg catggacatt cattttcaga tcaagtacct 3480 aatgaaagtt attttaaaat gatttcaact atagtttctc atccagagat tttgagattt 3540 taaggtactt tggttagcac gcggctggtg aaatctacga actgttggaa ttcgacacac 3600 atgggtacag ctgatgtc 3618 //