ID JQ691613; SV 1; linear; genomic RNA; STD; VRL; 8496 BP. XX AC JQ691613; XX DT 01-AUG-2012 (Rel. 113, Created) DT 11-MAR-2021 (Rel. 144, Last updated, Version 5) XX DE Gallivirus A1 strain turkey/M176/2011/HUN, complete genome. XX KW . XX OS gallivirus A1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Gallivirus. XX RN [1] RP 1-8496 RX PUBMED; 22875254. RA Boros A., Nemes C., Pankovics P., Kapusinszky B., Delwart E., Reuter G.; RT "Identification and complete genome characterization of a novel RT picornavirus in turkey (Meleagris gallopavo)"; RL J. Gen. Virol. 93(PT 10):2171-2182(2012). XX RN [2] RP 1-8496 RA Reuter G., Boros A.; RT ; RL Submitted (21-FEB-2012) to the INSDC. RL Regional Laboratory of Virology, ANTSZ, Baranya County Institute of State RL Public Health Service, Szabadsag u. 7, Pecs H-7623, Hungary XX DR MD5; f250373637b521d29afad060c692fb32. DR EuropePMC; PMC3541788; 22875254. DR EuropePMC; PMC4093779; 23559479. DR EuropePMC; PMC4403396; 25631076. DR EuropePMC; PMC4635496; 26018961. XX FH Key Location/Qualifiers FH FT source 1..8496 FT /organism="gallivirus A1" FT /host="Meleagris gallopavo (domestic turkey)" FT /strain="turkey/M176/2011/HUN" FT /mol_type="genomic RNA" FT /country="Hungary" FT /isolation_source="fecal sample" FT /collection_date="Apr-2011" FT /db_xref="taxon:2764087" FT 5'UTR 1..761 FT CDS 762..8186 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:I7C489" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:I7C489" FT /protein_id="AFO66657.1" FT /translation="MKLQLNLDFLAFSTPGSANPIPLAFGVSGSKFRRLALAHKIVAFS FT DERPPRRSGSYLYPSLPKPQYTSPSSITISSVRKPSESSSPPPEPLTPPPEPEIIDLLE FT ECDSDFQACLLNDDLEYYYKNGVLPFSSCLSYDDIYELICTHASFQGNITYNVTGNNNS FT FDTDQGLMASGSVAATGHGNASATDVTSPDPIQANATKPTKPKPTRSIPSKAASFDVIA FT MTSSRGVDTPPSTTRSAENPASILQSARTRNQTNAMASDVKAEETGFVTFDTMAYANRA FT APWPDPPEYDPPNLGPPIIGGPLADSLQIVTSYSWTLSSEPAQPLRSTLGAGWVERGDT FT DQNKQNPRFPLGSGAPETAPTTGHVIYLPSAIVISNPNCVFSRLYTSNRFYQCGFTVQV FT CVNANPGMSGILKITCKPSAASGFDNWNGFSTPSVLLNLSEANTATLTLPPFFPRGAGV FT TGIEDSWCVVITTVVEPRLGLMAGELNVNLAVAPRNSRFWLTAAPNTQGLVTMPAAGSG FT DGYTYSAQTRDFHPVMQAPPPLPHVDHLPGQISSFSELAMCPSSFRNRYYSIPKCFWCK FT DAVISLSGAEILSHTGPLSSAFRAFSQWRGDLILDLVAATSQTASGRLIVSYTPPGFAA FT PSRLTDLSPSAKHLWDLTSCSSVSILIPNCFPGGWVPTLPCTDPQKFVVTMLGFVSIFV FT ENPLLDLPQTSEGYSIVAYVRAAPNFELRGCSNQLFQSESQAPQGPSLDDDDFSTYLSY FT VSKLNSPSTFPMTNASKEMFYEFSPDKVAVVPLDASFFLYGCRSIFSYTTSNVGDRADI FT PADTDWCHTAASWVCRNFSAFSADLGIRFTFLSHTEGKYKIQWAYLPPGASQCLSGTVF FT SSPYSGSFIVDVEQANLPLYVPCMLPRNVFQLHPPQFPAYYRTGISPTSARTFGTSVDE FT FGSFQFLVTDASQIATPQPASSTNLTVLMNIELGFFNFKGFGLMPQYSPIKTNTPFYQP FT PCFLSNARIPSKRQGGEAIDISGEPVYVIRAPRPTYVHWALRQGDQQISLTKKGIQAVV FT SYEPCTGDIWALTTHQAWHMAKSLIGDTLPYHAFRNCTHFVEALTGYNLQNSGLGITLG FT LGAAAVATASVGVAKTLLDAHFRSLPQPRPRPQGPLDKTVEASENVMKAATIASGAAAS FT LESSIKKIEPTIKSSMDKIESSAKALAGSINKFTDLGEKLVPAVQAVAGEAQGVLGKFL FT MWITKIIGYIMIIFGSPTPLSIAGLITVIAADLAPGLVTLASNTSPIQSLVAWISSKLG FT IRTNAQEIADQFAGDEPDAPDQTDDPAPPPPPPPQNPAPQPQGVKDYNDWMNAFKNTDW FT AIEKILKIVERILNWIGIKIREDPATKLAEVEDKIFLLYNDSISALSHPDPNQAAIRSN FT LKASESLLSTAAKAKSPVHCQMVTQAVRNYNTRMTALTNNVPAPRPEPVVLYIYGPPGT FT GKSLLATLLASIFAYHLSGDPNDVFSQPPGSYEYFDGYHGQSVHIVDDIGQAVDGSDWV FT HFPQMVSTSPFKPPMAALEDKGMLYRSRVIICTSNFPGPTKSAVRCHQALERRLALKLK FT VDALPDCSFDIRDALTPDGPSTRHFTSDCPFLRLETCRLTVDMANVGDKMDFKFRHVDQ FT IVDEVLLMIQAKHHNINTFKHLIPTPRPLSSKFDTTQCKQTSLGLSCPPLFENDRDSNI FT IRPLPQGKIACNFQNPPTTPSDEDVQVQSSIPTEVEEAIRENKPLSFVQKVWSWRKPIF FT VGTAVLSMITSLSVLFSLTYRYFRSKSQGAYTGTPSVKAKPEPAPRRNLPARPRRQGIV FT GYNPTIVNNTVGGVSTNAQKTSTFTAIGIGERYFVTADHVVLDNMAQLTIGDTSYPAYK FT VFSFRQLCVLHAPEAPQMKILERFIKDCNSKIGYLVASFPRGNGYIQVSNAQWVVSDCP FT EITSKECYHYSCVSFSGLCGAPLVLSTPAGPRLVGVHVAGVAGVTGYADPLVDLLHAFK FT DAMPQSLIVDIPRSGPPAHVPRKTKLTHSPAWGAFEPTKEPAALLNHDRRLPDGVTVDE FT VAFSKQNRGDVVEPWPGLTEAADLYFSQCNFPRLKMLTMDEAINGTEGLDGIDMNQSPG FT YPWNQRTSRRELFILNEDGRYEPVEELKLAVLKLLQDPDYWYSTFLKDELRKTEKARAG FT KTRLVEAAPIDAIIAGRMIFGQLFALFHSNPGMFGSAVGCDPDFHWTPFAHSFKPFRNV FT WSLDYSCFDSTLPSVCFNHIGSRLQDIIEVTEECHPDIVPKYINSIRASKHVFGARAYV FT MIGGMPSGAVGTSIFNSMINNICVLSALISRPDFVPTPNNYRILAYGDDVLYACTPDFH FT PRDLKAFYDKWTPLQVTPATKEGDFPNSSSLSDVTFLKRWFVPDETIPYYYHPVIEPDT FT YEQSVMWSRGGEFQDTVTSLCFLAHHAGPRNYTNWIAAVRDACKRNGYDPPIFLEYSYL FT QMRWMQLVSG" FT 3'UTR 8187..8496 XX SQ Sequence 8496 BP; 1928 A; 2366 C; 1736 G; 2466 T; 0 other; tccctaccca agccccagta caccactatg gagttcttta tatcccagcg cgtggtggac 60 gcactgtgag gtattccgat accaccccac tcgcacttcc tggatagtgc gttagatatg 120 cccgacatat cgcttccagg accaaagccc cccttttctc tttcccaacc agcttcgcca 180 ctcaagctgt aattccatgt ccggtctttc cggccttagt atcatggaaa tgtggtcgtg 240 ctcaaatgaa attgagttga cattgatcaa tgaaagttgc actgaacttt gctaaactgg 300 ctagcgccac ctggtgtgtg ccgttggtct cctcacatgg taacatgtgc caacgggccc 360 gaaaggctag tgggcaatta ccgctccaag ggaggggtac ccaccccgac ctgaacagcg 420 gtaatgaagc tcacctccca ggctctgacc ccgagaagtt tagttattta gtaggtgtaa 480 ttagtacttg tgattggtca atttgatagt agtttgaaac gttatggatg aatgagtaga 540 ccccctgaag gtaccccatt acatgggatc tgatcagggc cacattctgc gtgtctcccc 600 gcacttgtgg ttaaaaccat gaaagttcat cccaaacaat cttttcctct tctttttctt 660 ttagtggtga caacctactg gattggtgat taccaatctg tactagtgtt gtattaagac 720 ttgttgtgtg gagaaaatgg actctttcaa gaagattttt gatgaagctg caattgaatc 780 tggattttct ggcattctcg acccccggct ccgcgaaccc tattccactt gcttttggcg 840 tttctggttc caaattccgc cgcctagctc ttgctcacaa aattgttgcc ttttccgatg 900 aaagaccccc ccgccgctct ggatcctacc tttacccatc cctacccaag ccccagtaca 960 cctccccatc ttccattacc atctcctctg tccgcaaacc ttctgaatcc tcttctcctc 1020 cccccgaacc actcactcct cctcctgaac ccgagataat tgatttgctt gaagagtgtg 1080 attccgattt tcaggcctgc cttctaaatg atgatttgga atattactat aaaaatggtg 1140 tccttccctt ctcctcctgc ttgagctatg atgatattta tgagttgatc tgtacccatg 1200 ctagctttca aggtaacata acatataatg taacaggaaa taacaattcc tttgacactg 1260 accaaggatt aatggcttct ggatccgttg cagccactgg acatggaaat gcttctgcca 1320 ctgatgtaac ctcccctgac cccatccaag ctaatgccac aaaacccact aaacccaagc 1380 ccactcgctc tatcccctct aaagctgctt cttttgacgt tattgctatg acctcctccc 1440 gcggtgtaga taccccccct tcgacgaccc gctctgctga gaaccctgct tcaatcctcc 1500 aatcggcacg aactcgcaat cagactaatg ctatggcatc tgatgtaaag gctgaagaaa 1560 ctggttttgt aacctttgac acaatggcat atgccaacag ggcagctccc tggcccgatc 1620 cacctgaata cgatcctcca aatttgggtc caccgataat tggtggacca cttgctgatt 1680 cgttacaaat tgtgaccagt tattcttgga ctctatcatc cgaaccagca cagcctctca 1740 ggtcaacact gggagctggc tgggtcgagc gtggagacac tgaccagaat aaacaaaatc 1800 caagattccc actcggatcg ggcgctccgg agactgcacc caccacaggg catgtcatat 1860 accttccttc agctattgtt atctccaatc cgaactgtgt cttctctcgg ctttatacgt 1920 caaataggtt ctatcaatgt ggctttactg tacaagtgtg tgtgaatgct aatcctggta 1980 tgtctggaat tctcaaaatc acctgcaaac catctgctgc ttctggcttt gataattgga 2040 atggcttctc aaccccgtct gtccttctga atctctctga agctaacact gcgaccctta 2100 cccttccccc cttcttccct cgtggtgctg gcgtcactgg gatagaagat tcctggtgtg 2160 ttgtgataac aactgtggtt gagccccgac taggattgat ggcaggagaa cttaatgtca 2220 atctcgctgt tgcaccccgc aacagccgct tctggctcac cgctgctccc aacacgcaag 2280 gactagtgac catgcccgcc gctggttccg gcgatggtta cacatattca gcccagaccc 2340 gcgactttca tcccgtgatg caagccccac cacccctccc gcatgtagat caccttcccg 2400 ggcaaatttc atctttttct gaattggcaa tgtgtccctc ttctttcaga aatagatatt 2460 actcaatccc aaaatgcttc tggtgcaaag atgctgtaat ttccctttct ggtgctgaga 2520 tcctatccca taccggtccc ttgtcctccg ccttccgcgc tttctcccag tggcgtggcg 2580 atctgatcct tgatttggtt gctgctacct ctcaaactgc atctggtaga ttgatagtgt 2640 cctacacccc ccccggtttt gctgccccat ctaggcttac tgatttatcc ccttctgcta 2700 aacatctttg ggatttgact tcatgttctt ctgtctccat ccttatcccc aactgtttcc 2760 ctggtggctg ggtccctacc ctcccgtgta cagaccccca aaaatttgtg gttacaatgt 2820 taggttttgt gtctatcttt gttgagaacc ctctattaga tcttccccag acttctgaag 2880 gttattctat agttgcatat gttagggctg cccccaattt tgaacttaga ggatgctcca 2940 atcaactttt ccaatctgaa tcccaagccc ctcaaggccc ctcattggat gatgatgatt 3000 tctcaactta cctttcctat gtgtcaaaat tgaattcacc cagcaccttc cccatgacca 3060 atgcttctaa agaaatgttt tatgaatttt cacctgacaa agttgctgtt gttccgcttg 3120 atgcttcttt cttcttatat ggatgtagat caattttcag ctataccacc agcaatgttg 3180 gtgacagggc tgatattcct gctgatacag attggtgtca tactgctgct tcatgggtgt 3240 gtagaaattt ttctgctttc tctgctgatt tgggtattag gtttactttc ttgtctcaca 3300 cagaagggaa atataaaatt caatgggctt accttccccc tggtgcctcc cagtgtcttt 3360 ctggaacagt gttctcctcc ccttattccg gatcatttat tgtagatgta gaacaagcaa 3420 atctccctct gtatgtccct tgcatgctac cccggaatgt ctttcagctg caccccccac 3480 aattccctgc ttactaccgc actggaattt cacctacatc cgcacggaca tttggtactt 3540 cagtagatga atttggctcc tttcaatttt tggtaactga tgcttcccaa attgcaaccc 3600 cacaacccgc aagttctacg aacttgacgg tcctcatgaa catagaattg ggctttttca 3660 atttcaaagg atttggactc atgcctcagt attccccaat caagaccaat actcccttct 3720 atcaaccccc atgcttcctg agcaatgccc gcatcccctc caagcgccaa ggaggtgaag 3780 ccattgacat atctggtgaa ccagtgtatg tgattcgggc acctcgcccg acttacgtgc 3840 actgggctct tcgacagggg gatcaacaga tttccttgac gaagaaaggc atccaagccg 3900 tggtctcata tgaaccctgc acaggagaca tatgggccct aacaactcac caggcatggc 3960 acatggccaa atctcttatt ggtgataccc tgccctacca cgctttccgc aactgtaccc 4020 actttgtaga agctttgact ggatacaacc tgcagaactc aggacttggc ataactctag 4080 gattaggtgc tgctgctgtt gccactgctt cagtgggcgt cgcaaaaacg ctccttgacg 4140 ctcacttccg ctccctccct cagccccgtc cccgtcccca aggccctttg gacaaaactg 4200 tagaggcttc tgagaacgtc atgaaggctg ctaccatcgc cagtggtgcg gccgcctctc 4260 tagagtcttc tatcaagaag attgaaccaa caatcaagag ttcaatggac aagatagaga 4320 gctcagccaa agccctggct gggtccatca acaagttcac tgatctcgga gagaaattgg 4380 ttccggctgt tcaggcagtc gctggagaag ctcaaggcgt tcttggcaag ttcttgatgt 4440 ggattactaa aataattggg tatataatga tcatctttgg gtcccccacc cccctctcaa 4500 ttgctggatt gattactgtg attgctgctg acctcgcccc tggccttgtt acccttgcat 4560 ccaacacctc ccctatccag tcccttgttg cttggattag ctcaaaatta ggaattagga 4620 ctaatgctca agaaattgct gaccaatttg ctggagatga acctgatgcc cctgatcaga 4680 cagatgatcc cgctcctcca ccccccccac ccccacagaa ccccgctccc caaccccaag 4740 gagtcaagga ctacaatgat tggatgaatg ctttcaaaaa cactgattgg gccattgaga 4800 agattctgaa aattgtagag cgtattctga attggatagg aatcaaaatt agggaagatc 4860 ctgcgactaa attggctgaa gtcgaggaca agattttctt gctatataat gactccattt 4920 ctgctctttc ccaccccgac ccaaatcagg ctgctattag gtccaatctc aaagcttctg 4980 aatccctcct gtccactgct gctaaagcca aatctcctgt ccactgtcaa atggtaaccc 5040 aagctgttag gaattataat actaggatga ctgccctcac caacaatgtc cccgcccccc 5100 gtcccgagcc cgttgtcctg tatatctatg gtccccctgg tactggaaaa tctctgcttg 5160 ctaccctcct tgcttcgatt tttgcttacc acctttccgg tgatccgaac gatgtctttt 5220 cgcaacctcc tggaagttat gagtactttg atggatacca tggtcaatct gttcacattg 5280 tggatgatat tggccaggcg gtcgatggat ccgactgggt tcatttcccg caaatggtgt 5340 ctacctcacc cttcaagccc cccatggcgg cgcttgaaga taaggggatg ctctaccgca 5400 gtagagtgat catctgtact tctaacttcc cggggccaac gaagagtgct gttcggtgtc 5460 accaagccct cgaaaggcgt cttgctctca aattgaaagt ggacgcttta cccgactgtt 5520 cctttgacat tcgcgatgcc ctgacccccg acggcccctc cacccgccac ttcacctccg 5580 attgtccttt ccttaggtta gaaacttgta ggcttactgt agatatggcc aatgtaggag 5640 ataaaatgga tttcaaattt aggcacgtag atcaaattgt agatgaggtt ctcttgatga 5700 ttcaggctaa acaccataat atcaatacct ttaaacactt gatccccact ccccgccccc 5760 tttcttctaa gtttgacaca acccagtgca aacagacctc ccttggactt tcctgccctc 5820 ccctctttga gaatgatagg gattctaata taatcaggcc ccttccccaa ggtaagattg 5880 cttgtaattt ccagaaccct cccaccaccc ctagcgatga ggatgtgcaa gtgcaatcct 5940 ccattccgac tgaagtcgag gaagcgattc gtgaaaacaa accgctttct ttcgtccaga 6000 aggtatggag ttggcgcaag cccatctttg tcggtaccgc tgttctgtcc atgattactt 6060 ctttgtctgt gctcttctct ctgacctata ggtacttcag gagtaaatcc caaggggcgt 6120 atactggcac accttctgtg aaggctaaac cagaacccgc tcctaggagg aacctccctg 6180 ctaggcctcg tcgccaaggc attgttggct acaatccaac catagtcaac aatacagtgg 6240 gtggcgtctc caccaatgcg cagaagactt ccacgtttac tgcaattggt ataggcgaac 6300 gctattttgt cacggccgac catgtcgttc ttgacaatat ggctcagctc actattggcg 6360 acacgtccta tcctgcctat aaggtctttt ctttccgtca gctctgtgtc cttcacgctc 6420 ccgaagctcc tcagatgaaa attttggaaa gatttattaa agattgtaat tctaaaattg 6480 gctacttagt tgcttccttc ccccgcggta atggttacat ccaggtttcc aatgctcaat 6540 gggttgtatc cgactgtcct gaaattactt ctaaggaatg ctatcactac tcttgtgtat 6600 ctttttctgg tctgtgtggt gccccccttg ttctttccac tcctgctggc cctcgccttg 6660 tcggtgtaca tgtagccggt gtcgctggcg ttaccggtta cgccgatcca cttgtggatc 6720 ttctgcacgc cttcaaggat gctatgcccc aatccctaat tgtagacatt ccccgctctg 6780 gccctcctgc ccatgtccct cgcaaaacca agcttaccca ctcccctgct tggggggctt 6840 tcgagcccac caaagaacct gctgctttgc ttaaccatga taggagactc cccgacggcg 6900 ttactgtgga tgaggttgct ttcagcaaac aaaaccgcgg tgatgtcgtt gaaccctggc 6960 ctggtcttac agaagctgct gatctttact tctctcaatg caactttcct cggctgaaga 7020 tgttgacaat ggatgaggcg ataaatggca ctgaaggttt ggatggaata gacatgaacc 7080 agtctcctgg atacccgtgg aaccaacgaa cgtctcgacg tgaattgttc atcttgaatg 7140 aggatggccg gtacgagcct gttgaagaat taaaacttgc tgttttgaaa cttcttcagg 7200 atcctgatta ctggtattcc acattcttga aggacgaatt gcgcaagact gagaaggccc 7260 gcgccggaaa gactcgtttg gttgaagccg ccccgattga tgccattatc gctggtagaa 7320 tgatctttgg ccaacttttt gccctcttcc attccaatcc tggtatgttt ggctctgctg 7380 ttggttgtga ccctgatttt cattggactc ccttcgccca ttcctttaaa cccttccgga 7440 atgtgtggtc tcttgactat tcctgttttg attctaccct cccttctgta tgttttaatc 7500 atattggttc tcgacttcaa gatattatcg aagtgactga agaatgtcac cctgacattg 7560 tccctaagta cattaactcg atacgtgcct caaaacacgt gtttggtgcc cgtgcttatg 7620 tgatgatcgg tggtatgcct tcaggagctg tcggtacctc tatcttcaat tcgatgatca 7680 ataacatttg tgtgttgtct gccctcatct cccgtcctga ctttgttccc acccctaaca 7740 attataggat tcttgcttat ggtgatgatg ttttgtatgc ttgtacccca gacttccacc 7800 cccgtgatct taaggctttc tatgataaat ggaccccgct gcaagtgacc cctgctacta 7860 aagaaggtga tttccctaac tcctcttctc tctctgatgt cacttttctg aagcgatggt 7920 ttgtcccgga tgaaactatc ccttactact atcaccctgt gattgagccc gatacttatg 7980 aacagagtgt tatgtggtct aggggtggcg aatttcagga taccgtcact tctctctgct 8040 ttcttgctca ccacgctggt ccccgcaact acaccaattg gattgctgcc gtccgtgatg 8100 cttgtaaacg caatggctat gaccctccca ttttcttaga atattcttat cttcagatgc 8160 gctggatgca acttgtgtct ggctaactgc ctaggcctgc ttggcagtat aataaatcag 8220 gtgctctggc cgagctaaat ggctagttgt aggacttaca acctgcacct agggccgccg 8280 ccatctgggt tttcactcag gtggtacctc ccatgcggta tctcatactc ctaggtctat 8340 cccaatgagt tcttggcgat ataaaggcca ccataatttc tttcggtgtg tccctaaacc 8400 aagaatgcat ctctctcttt tgtaggtttg tgtgaatgtg tgtgtttccc acccccatcc 8460 ccacccccgt gtgcaaactt gtatgagtgt ttgtag 8496 //