ID JQ675603; SV 5; linear; viral cRNA; STD; VRL; 6848 BP. XX AC JQ675603; XX DT 01-MAR-2013 (Rel. 116, Created) DT 07-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Jatobal virus RNA polymerase gene, complete cds. XX KW . XX OS Jatobal virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; Orthobunyavirus; Jatobal orthobunyavirus. XX RN [1] RP 1-6848 RX DOI; 10.1099/vir.0.061309-0. RX PUBMED; 24558222. RA Ladner J.T., Savji N., Lofts L., Travassos da Rosa A., Wiley M.R., RA Gestole M.C., Rosen G.E., Guzman H., Vasconcelos P.F., Nunes M.R., RA J Kochel T., Lipkin W.I., Tesh R.B., Palacios G.; RT "Genomic and phylogenetic characterization of viruses included in the RT Manzanilla and Oropouche species complexes of the genus Orthobunyavirus, RT family Bunyaviridae"; RL J. Gen. Virol. 95(Pt 5):1055-1066(2014). XX RN [2] RP 1-6848 RA Palacios G., Savji N., Lipkin W.I.; RT ; RL Submitted (13-FEB-2012) to the INSDC. RL Center for Infection and Immunity, Columbia University, 722 W 168th Street RL 17th Floor, New York, NY 10032, USA XX RN [3] RC Sequence update by submitter RP 1-6848 RA Ladner J.T., Savji N., Lofts L., Wiley M., Gestole M.C., RA Travassos da Rosa A., Rosen G.E., Guzman H., Vasconcelos P.F.C., RA Nunes M.R.T., Tesh R.B., Lipkin I., Palacios G.; RT ; RL Submitted (03-JAN-2014) to the INSDC. RL Center for Genomic Sciences, United States Army Medical Institute of RL Infectious Diseases, 1425 Porter Street, Frederick, MD 21702, USA XX RN [4] RC Sequence update by submitter RP 1-6848 RA Ladner J.T., Savji N., Lofts L., Wiley M., Gestole M.C., RA Travassos da Rosa A., Rosen G.E., Guzman H., Vasconcelos P.F.C., RA Nunes M.R.T., Tesh R.B., Lipkin I., Palacios G.; RT ; RL Submitted (01-MAY-2014) to the INSDC. RL Center for Genomic Sciences, United States Army Medical Institute of RL Infectious Diseases, 1425 Porter Street, Frederick, MD 21702, USA XX DR MD5; 70b6f77099e76dfbfb85c71c6eb77933. DR EuropePMC; PMC5974287; 24558222. XX CC On May 1, 2014 this sequence version replaced gi:625180289. CC ##Assembly-Data-START## CC Assembly Method :: Ray v. April 2013 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6848 FT /organism="Jatobal virus" FT /segment="L" FT /host="Nasua nasua" FT /isolate="BeAn 423380" FT /mol_type="viral cRNA" FT /country="Brazil" FT /collection_date="1984" FT /db_xref="taxon:150058" FT CDS 43..6801 FT /codon_start=1 FT /product="RNA polymerase" FT /db_xref="GOA:M1F368" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:M1F368" FT /protein_id="AFI24668.1" FT /translation="MSQLLLNQYRNRILHCREPEIAKDIWRDLLNDRHNYFSVEFCRAA FT NLEHRNDVPAEDICAEVVDMSKARKVRFCTPDNYLLHDGKMFIIDFKVSIDERSSRLTR FT DKYNEIFGEIFNPEGIDYEVVIIRLDPSNMTIHIDSREFTDIIGPLTLNIDLQWFFDMK FT DFLFGKFRDDDKFHAIINQGEFTMTLPWIEEDTPELLTHPVYLEFMHSMPLEEQQLFNN FT SLNFKSFGAEKWNIFLKEVLSNYEDYYKKFIKDNAKSIFLTTGNYPKPDKQQISAGWNE FT MVARVGTERELVDDINQEKPSLHMIWSQNDSTSNNNIQKLIKLSKLLQSISGSGTYINA FT FRSLGKLMDISADTRKYEAFCNQLKSLARSSVKKLDRKIDPIQIGTSTVLWEQQFKLDT FT EVIKREDRIHLLKDFFGIGKHKSFNKKLNSDINLEKPKILNFNNEDLIRKCKNKYNQAV FT YNLSQPNQLDKIGNYLEHFSAKINNCSVDMWDFIYNTTKTRYWQCINDYSMLMKNMLAV FT SQYNRHNTFRIVSCANNNLFGLVMPSSDIKTKKATLVYAIIAIHNDEKEVVELGSLYST FT FKTNTGYLSISKAFRLDKERCQRIVSSPGLFLMTSCLLFNGNKSLELNELLGFSFFTSV FT SITKAMLSLTEPSRYMIMNSLAVSSHVKEYISEKFSPYTKTCFSVIMTDLIKKGCYSAY FT EQRKKVQIRDIKLTDYDITQKGVDSKRDLKSIWFPGKVSLKEYLNQIYLPFYFNSKGLH FT EKHHVLIDLAKTILEIERDQRESLPEPWSEIPKKQTVNLKILIYSIAKNLNLDTSRHNF FT VRSRVENANNFNRSITTISTFTSSKSCIKIGDFEDLKKKKVKSDTKKLSKEIKKVSIAN FT PLFLDEITNENEIKHSTYEDLKQSVPEYTDYMSVKVFDRLYEKIKNKEMEDSETVKLIL FT ETMKTHKTFYFGFFNKGQKTAKDREIFLGEFEAKMCLYLVERIAKERCKLNPEEMISEP FT GDSKLRVLEKQSEEEIRYISNSVKTFKNTVENLKSGKLNWSEIDENKTRGLKIEINADM FT SKWSAQDVLFKYFWLISLDPILYPAERKRILYFLCNYMQKKLILPDELLTTILDQRVPH FT SNDIIGMMTNNYRTNTVEIKRNWLQGNLNYTSSYLHSCSMSVYRDIIKEGAMLLEGEAL FT VNSMVHSDDNQTSICMIQNKLSDDSVIEFCINVFEKICLTFGNQANMKKTYLTNFIKEF FT VSLFNIHGEPFSIYGRFLLTAVGDCAYLGPYEDLASRLSATQTAVKHGCPPSLAWLSIA FT LNHWITHTTYNMLPGQTNDPLPFFPTNNRNEIPVEMCGLLESDLSTIALTGLESGNVTF FT LTNMARKLAPPILQRESIQDQYNSIETWDLEKLSPIDILKFKMLRYIALDSSVTSDDGM FT GETSEMRSRSLLTPRKFTTSGSLNRLVSYKDYQEIISDNQRMDELFETFIRYPELLVTK FT GENFEEFTKTILFRYNSKKFKESLSIQNPAQLFIEQILFSNKPVIDYTSIHDKMFGLQD FT IPGIEELDTIIGRKTFVESYVQIVDDLSNLKLDLDDIKTVYAFCLMNDPLLVTAANNII FT MSVKGHGQERIGQSACKMPEVRSLKLIHYSPAIVLRAYVRGINSIPNIDVDELSRDLSH FT LEEFIKSTNLREHMRDRIDKNEKKQLSRDLKFEIKELTRFYQVCYDYVKSTEHKIKVFI FT LPYKVFTSIEFCGALTGNLISDKVWYITHYLKNIVSSTHKAQISASPELEVQIADEALR FT LIAHFADTFLSADSRVNFLKTVVEQFNYKGIPVKHLYAKIKNSKLRTKFLGILLWLDDL FT TQSDLDKFDADKSDEKIIWNNWQVSRDMNTGPIDLIISGYSRQLRITGEDDRLIAAELQ FT VTRLSEDLIHRHGQAMLNKPHGLKLEKMQSIQEMSRQLYYIVYQQRSRKRYFYSILPTQ FT IIEDHNSRVESSRLTKNSKWVPVCPVAISKLYQQGRPILSKVKKLNMQTYTLSRIQVNI FT EEYAITRRAHFQKMPFFEGPPIPSGGIDLSELMKSTSLLSLNYDNIRNASLLDMSRVFK FT CNGSQNDQMAFEFLSDEVLEQDIIEEIECNPIFSISYTKKGDPNMTYKNAFHKALIAEC FT DKFETAFDFLDMGFCSNENLSILEEIHWIISYLKTNQWSTELDNCIHMCMYRNGYDAEF FT HNFDIPSKFLKDPITRSINWPEVIEFILLIEEFETAIEPWASIKSHFCSKAHSVALESM FT RHERRSLAEFVDTNKKTGKSKFDF" XX SQ Sequence 6848 BP; 2562 A; 1036 C; 1216 G; 2033 T; 1 other; agtagtgtac tcctattgaa aaacaaacaa caaaaacttg aaatgtctca gttactatta 60 aatcagtatc gaaaccgtat ccttcactgc cgagaacctg aaattgcaaa ggacatatgg 120 cgagatttat tgaatgatcg ccataattat ttctcagtag agttctgtag ggcagcaaat 180 ctggagcata gaaatgatgt gccagcagaa gatatttgtg cagaagttgt ggacatgtct 240 aaggcccgta aagtgaggtt ctgtacccct gataattatt tgctccatga tggtaaaatg 300 tttataatag atttcaaagt ttcaattgat gaaagatcat ctagattgac aagagacaag 360 tataatgaaa tatttgggga aatcttcaat cccgaaggta ttgactatga agttgtgatt 420 attagacttg atccgtccaa catgactatc cacattgatt ctagggaatt cacagacatt 480 ataggaccct taacgctgaa tatagatctg caatggtttt ttgatatgaa agatttccta 540 tttgggaaat ttagagatga tgataaattc catgcaataa tcaatcaagg agaatttacc 600 atgactttac cttggattga agaggataca ccagagctat taacacaccc tgtttatcta 660 gagtttatgc actcaatgcc tttagaagaa caacaattgt tcaataattc tttgaatttt 720 aagtcctttg gagcagagaa atggaatatc ttcctgaagg aggttctaag caattatgaa 780 gattactata agaaatttat aaaggataat gcaaaatcta tattcttaac tacaggtaat 840 tatcccaagc ctgataaaca gcaaatatct gctgggtgga atgaaatggt ggcaagagtt 900 ggtacagaac gagaattggt agatgatata aatcaagaaa agcccagcct gcatatgata 960 tggtcccaaa atgattcaac aagcaacaac aatattcaga aactcatcaa attatcaaaa 1020 ttgctgcaat cgattagtgg atcaggtact tatatcaatg catttagatc tctaggaaaa 1080 ttaatggaca tttcagcaga tacaaggaaa tatgaagctt tttgcaatca gttaaaatcg 1140 cttgctagat ctagtgtcaa aaagttagat agaaaaattg atcccataca gattggtact 1200 tcaacagtgt tgtgggagca gcagtttaaa ctggacactg aagtgataaa aagagaagac 1260 agaattcact tattaaaaga tttcttcgga attggtaaac ataaatcttt caataaaaaa 1320 cttaattctg atataaattt agaaaaaccc aaaattttaa atttcaataa tgaagactta 1380 atccggaagt gcaagaacaa atataatcaa gcagtgtaca acctatccca accaaatcag 1440 ttagataaaa ttgggaatta cttagaacac ttttctgcta aaatcaataa ctgtagtgtt 1500 gacatgtggg attttatata caacacaacc aaaacaagat actggcaatg tataaatgat 1560 tactcaatgc ttatgaagaa tatgcttgct gtatcccagt ataacagaca caatacgttt 1620 agaatagtat cctgtgccaa taataatctg tttggattag taatgccaag ttcggatatc 1680 aaaacaaaaa aagcaacttt agtctatgca attatagcaa ttcataatga tgagaaagaa 1740 gttgttgaat tgggatcatt atattccaca tttaaaacta acactggata tctatccata 1800 tcaaaagcat ttcggcttga caaggaaagg tgtcaaagaa tagtatcatc tcctggatta 1860 ttccttatga caagttgctt attatttaat ggaaacaaga gtttagaatt aaatgagtta 1920 ttaggattct catttttcac gtcagtctcc ataacaaaag caatgttatc cctaactgaa 1980 ccatctagat atatgataat gaattcctta gcagtctcta gtcatgtgaa agagtacatt 2040 tctgagaaat tttcacctta tacaaagact tgtttttctg ttattatgac agacttgatt 2100 aaaaaaggat gttattctgc atatgaacag aggaaaaagg ttcaaattcg cgacataaaa 2160 ctgactgatt atgatataac acagaaagga gttgattcta aaagagattt gaaatcaatc 2220 tggtttccag ggaaagtaag cctcaaagag tacttgaatc agatatactt acctttttac 2280 ttcaattcca agggcctgca cgaaaaacat catgtcctga ttgatctagc taaaacaatc 2340 cttgagatag agagagacca aagagaatct ttacctgagc cttggtcaga gattccaaaa 2400 aaacaaactg taaatctgaa gattttaatt tattctatag caaaaaatct taatttagat 2460 acatcaagac ataactttgt aaggagcaga gttgagaatg ctaataactt taatcgatcc 2520 attactacta tctcaacatt tactagttca aaatcctgta tcaaaatagg agattttgaa 2580 gatctaaaga aaaagaaggt aaaatctgac acaaaaaagt tatctaaaga aataaaaaaa 2640 gtgtctattg ctaatccatt gtttctcgat gaaattacaa atgaaaatga aataaagcat 2700 tctacatatg aagacttgaa acaatctgtc ccagaatata cagattatat gtctgtgaaa 2760 gtgtttgata ggctatatga aaagattaaa aataaagaga tggaagatag tgaaacagta 2820 aagttaatat tagagactat gaaaacacac aaaacctttt actttggatt ttttaacaaa 2880 ggtcagaaga ctgctaaaga tagagaaata ttcctgggag agtttgaggc taaaatgtgt 2940 ctttacttag tggaaagaat tgcaaaggag agatgcaaac tcaatccaga agaaatgatt 3000 agtgaaccag gagattctaa attacgagta ttagagaagc agtcagaaga agaaattaga 3060 tacattagta atagtgtgaa aacatttaaa aatactgtgg aaaatttgaa gtcaggtaaa 3120 ttgaactggt ctgaaattga tgaaaataaa actagaggat tgaaaataga aattaatgct 3180 gacatgtcaa aatggagtgc ccaagatgtg ctatttaaat atttttggct gataagtttg 3240 gacccaatac tctatcctgc tgaacgcaaa agaatactct actttttatg taattatatg 3300 caaaaaaagc tcattttacc agatgaactc ttaactacta tattagatca aagagtgcca 3360 cactcaaatg atattattgg gatgatgaca aataattata gaacaaacac agtagagata 3420 aagcgtaatt ggttacaggg caatttgaat tatacaagta gttaccttca tagttgtagt 3480 atgtctgtct atagagatat aattaaagaa ggagcaatgc ttttagaagg ggaggccttg 3540 gtgaattcaa tggttcactc tgatgacaat caaacatcta tatgcatgat acaaaacaag 3600 ctatctgatg attcagttat agagttctgt ataaatgtgt ttgaaaagat atgcttaaca 3660 tttggcaatc aagcaaatat gaagaaaaca tatctaacaa attttattaa agagtttgtt 3720 tctctattta acatacatgg tgaacctttt tcaatttatg ggagattttt attaactgct 3780 gtcggtgact gtgcttattt aggtccttat gaagatttag ctagtcgact ctccgctaca 3840 caaacagctg tgaaacatgg ttgccccccg tccttggctt ggctctctat agctctgaat 3900 cattggataa cacatacaac ctacaatatg ttacctggtc aaactaatga tcctttgcca 3960 ttcttcccaa caaacaacag aaatgaaata ccagttgaaa tgtgcggtct tctagaaagc 4020 gatttgtcta caatagcact gacaggattg gaatctggaa atgtaacatt tcttactaat 4080 atggctagaa aattggcacc ccctattcta caaagagaaa gcattcaaga tcaatacaat 4140 tccatagaaa catgggattt agagaaacta tctccgatag acatattgaa attcaaaatg 4200 cttagatata tagcgttaga cagctcagtt acatctgatg atggaatggg agaaacaagc 4260 gaaatgcggt cgagatcatt actaacaccc aggaaattca ctacaagtgg ctccttaaat 4320 cggttagtat cttataaaga ctatcaagaa ataatctcag ataaccaacg tatggatgaa 4380 ttatttgaaa catttatcag atatcctgaa ctcctagtga ctaaaggtga aaattttgaa 4440 gaatttacaa aaaccatact atttcgttat aattcgaaaa agtttaaaga gtctctatca 4500 atacaaaacc ctgcacagct gtttatcgaa cagatcttat tctcgaataa accagtcata 4560 gattacacta gtattcacga taaaatgttt ggccttcaag atataccagg tattgaggag 4620 ctagatacta ttataggtcg taaaacattt gttgaaagtt atgttcaaat agtagatgat 4680 cttagcaatt taaaattgga cttagatgat attaaaacag tttatgcatt ctgccttatg 4740 aatgatccac tattagtaac tgcagcaaat aatataataa tgtcagtaaa aggacatggt 4800 caagagagaa ttggtcaatc agcctgcaaa atgccagaag taagaagctt aaaattaata 4860 cattattcgc cagcgattgt gttgcgagca tatgtgaggg gtattaacag catacccaat 4920 attgatgttg atgagctttc tagggactta tcgcatttag aggaatttat taaaagtaca 4980 aatttaaggg agcacatgag ggatagaata gataaaaatg aaaagaagca actatctaga 5040 gatctcaaat ttgaaataaa ggaattaaca agattctatc aggtttgcta tgattatgtt 5100 aagtctactg agcataaaat aaaggtcttt attctaccat ataaagtttt cacttcgatt 5160 gagttttgtg gagcattaac gggcaattta attagtgata aagtttggta tataacacat 5220 tatttgaaaa atatagtctc tagtacgcat aaagcacaga tatctgcatc tccagaattg 5280 gaggttcaaa ttgcagatga ggcgcttcgt cttattgcac actttgctga taccttcttg 5340 tctgctgatt ccagagtaaa ttttttgaaa actgtggtag agcaattcaa ttataaaggc 5400 atacctgtta aacatctata tgctaaaatt aaaaattcaa aattaagaac aaaattttta 5460 ggaatcttgc tgtggttgga tgatttaact cagagtgatt tagataaatt tgatgctgac 5520 aaatcagatg aaaagattat ctggaataat tggcaagtat caagggatat gaacactgga 5580 ccaattgatt taataataag tggttattca agacaactca gaatcactgg tgaagatgac 5640 aggcttatag cagccgaact gcaggtgaca agattatcag aagatttaat acaccgtcat 5700 gggcaagcaa tgttgaacaa acctcatggt ttaaaattag aaaaaatgca aagcatmcaa 5760 gaaatgtcca gacaactata ttacatagtt taccaacaaa gatctcgtaa acgctacttt 5820 tactcaatat taccaacaca aataatagag gatcataact caagagtaga atcatctaga 5880 ttaacaaaaa attcaaaatg ggtgccagtt tgtccggttg ctatatcaaa actttatcaa 5940 cagggtagac ctatactgtc taaagtaaaa aagctaaata tgcagactta tactttatcc 6000 cgaatccaag ttaatattga agaatacgca ataacaagaa gggcacattt tcaaaagatg 6060 ccattctttg aaggtccacc aattccgtct ggagggatcg atctgtcaga attaatgaaa 6120 tccacatctt tattaagttt gaactatgac aatatacgga atgcatcgct tttagatatg 6180 tctagagtct ttaaatgcaa tggtagtcaa aatgatcaaa tggcattcga attcttatcg 6240 gatgaggtgt tagaacaaga tattatagag gaaattgaat gtaatccaat cttttcaatc 6300 agttacacaa agaaggggga tccaaatatg acatataaaa atgcatttca taaagcttta 6360 attgctgaat gtgacaaatt tgaaacagct tttgacttcc tagatatggg attttgttcg 6420 aatgaaaatt taagtatact agaggagatc cattggatca taagttattt gaaaacaaat 6480 caatggtcca cagagttaga taattgtata catatgtgta tgtatagaaa tgggtatgat 6540 gctgaattcc ataatttcga tataccatct aaatttctta aagatccaat tacacggtca 6600 attaactggc cagaagtgat tgaattcata ctgttaatag aagaatttga aacagcaata 6660 gaaccatggg caagtataaa atcacacttc tgttctaaag ctcatagcgt tgccttagaa 6720 agtatgagac acgaaagaag gtctttggca gaatttgtag acaccaacaa aaaaactggg 6780 aaatcaaaat ttgattttta aacttatctg atatagtagt gtttgtttct caataggagc 6840 acactact 6848 //