ID JQ675602; SV 4; linear; viral cRNA; STD; VRL; 4403 BP. XX AC JQ675602; XX DT 01-MAR-2013 (Rel. 116, Created) DT 01-MAY-2014 (Rel. 120, Last updated, Version 3) XX DE Jatobal virus isolate BeAn 423380 polyprotein gene, complete cds. XX KW . XX OS Jatobal virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; Orthobunyavirus; Jatobal orthobunyavirus. XX RN [1] RP 1-4403 RX DOI; 10.1099/vir.0.061309-0. RX PUBMED; 24558222. RA Ladner J.T., Savji N., Lofts L., Travassos da Rosa A., Wiley M.R., RA Gestole M.C., Rosen G.E., Guzman H., Vasconcelos P.F., Nunes M.R., RA J Kochel T., Lipkin W.I., Tesh R.B., Palacios G.; RT "Genomic and phylogenetic characterization of viruses included in the RT Manzanilla and Oropouche species complexes of the genus Orthobunyavirus, RT family Bunyaviridae"; RL J. Gen. Virol. 95(Pt 5):1055-1066(2014). XX RN [2] RP 1-4403 RA Palacios G., Savji N., Lipkin W.I.; RT ; RL Submitted (13-FEB-2012) to the INSDC. RL Center for Infection and Immunity, Columbia University, 722 W 168th Street RL 17th Floor, New York, NY 10032, USA XX RN [3] RC Sequence update by submitter RP 1-4403 RA Ladner J.T., Savji N., Lofts L., Wiley M., Gestole M.C., RA Travassos da Rosa A., Rosen G.E., Guzman H., Vasconcelos P.F.C., RA Nunes M.R.T., Tesh R.B., Lipkin I., Palacios G.; RT ; RL Submitted (03-JAN-2014) to the INSDC. RL Center for Genomic Sciences, United States Army Medical Institute of RL Infectious Diseases, 1425 Porter Street, Frederick, MD 21702, USA XX DR MD5; 7f1f5d81080f1bdef9893d5da225d241. XX CC On Apr 30, 2014 this sequence version replaced gi:570933037. CC ##Assembly-Data-START## CC Assembly Method :: Ray v. April 2013 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4403 FT /organism="Jatobal virus" FT /segment="M" FT /host="Nasua nasua" FT /isolate="BeAn 423380" FT /mol_type="viral cRNA" FT /country="Brazil" FT /collection_date="1984" FT /db_xref="taxon:150058" FT CDS 24..4289 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:M1F0P5" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR005168" FT /db_xref="InterPro:IPR026400" FT /db_xref="UniProtKB/TrEMBL:M1F0P5" FT /protein_id="AFI24667.1" FT /translation="MFFQIIEFFLCLVVVVSNPLTKDHTGNRCFAGGHLFKEITQKVGT FT SEICIKDDISIIKSQVEIIKKQNDISYNIKFYRIYLVKEWSDCNPILDVHGSVMILDIT FT NSGLIEPKMYTCRASCDITLDKDNAEVIFISQKSNNYELAGTTVMHGWFKNVVSVKLEH FT TCEHLSATCGQKTIKFHACFRQHRGCARFFRNTYMPIAMVEALCSNIELIIFVSYIFIC FT LAFSFIITRTYIAYLLIPVFYPITYIYGKLYLKCLKTCPNCLLAIHPFTNCKNICICGS FT RFSNTESLKVHRLGNCYGYKALSGARSMCKSKTSSFATAVFFGIIILSFITPLHGEKTY FT KLSELPDDYIKLEMMIKNINTKETITDILNYALIFSIIIITVCQDYFFNFLYKGRFRFC FT SFCEMIHARKGLKIFSNMTNKCGTCICGFNQEIRSGFDYEIFIKDMHIAKESCRYNYFK FT SYNVSMKILLILMLIPLIGTTVADDTVCLKYDLNKGLGDLKNCYGLKLGISNYKSVDSA FT YNELTEKKLVSDLDKLDLSILKGSKEHIFDAIENSLNIHRMVFLEYLAYKTNPKLKEIT FT HNTGPYNVAWRAFIHNNNLEICGSYPYKLICYCINQKTHCENTTVDHGSQIQPYYTKHP FT NTYKADMEALLKTIQIAFRGIVKVLIQFYVENNKTSDLINLLTELQTKMENNPQMKGIL FT KFLCEFMKTPLQVPKTMKINVKPDISGANPFNNFSTSKENITKCVKIVKLRCITKSTLI FT EHNYILCGESEKKIYQWPTKPTIMENGNACLGDKHCHLQFTPIENDEAIKTVSCYKENF FT EQNPGPMNTQLKKCEALNVGICVTIKNENWPIVQCKTELYYYADGRIHAKDGTINNYCF FT SEKCNVDRFPIHSDYISTCNWQETAKDYQHVKEFIHLDIESYKRAIESDIKTDLVIHKF FT RPTKNLPHVIPRYSSLILQGTETSDGIQNAFIQGSLPAISGLANGYHLYTPNSKQLFDV FT ILFLRKASYRAEYRRIYTTGPTIGINVEHNEQCTGSCPKTIEKKQNWLTFSKEHTSQWG FT CEEYGCLAMDAGCVYGSCQDIIRPEIDIYKIYGSERSMVELCITLPHETFCNDLDVLEP FT IIGDKIQAAFQTVQSTHMPRLIAIKNNKAFTGQINDLGNTASYCGSVQKFNGTILGQGD FT PKFDYICHLLKRKDIIVRRCYNNNYESCKFLTPRPDIIIDKKNDILQASIVGMNLGQMN FT FKIMLGDINYNQYTETENLEITGQCVGCIDCSEDIICSLKISSQSESVCKITSECRLYI FT ENILIQPSVNDYNIKLTCRSKSDKLKINICKQEFVLPLTIKSHNQKIDLSKLDESNYIK FT EEDLRCETMLCKVKDEGISFITEGIFGGISYFWKTIIISLATIGILVIFYYIGLPLFKI FT LKDYLKRNELEYLAERKLK" XX SQ Sequence 4403 BP; 1694 A; 632 C; 732 G; 1345 T; 0 other; agtagtgtac tcccaacaac aaaatgtttt ttcaaattat agaatttttc ctgtgcctag 60 tagtggtcgt tagtaatcca ctgacaaaag accatactgg taatagatgt tttgctggtg 120 gccacctgtt caaagagata acgcagaagg tagggaccag tgaaatatgc attaaagatg 180 atatatcaat aattaaaagc caagttgaaa ttataaagaa acaaaatgat ataagttata 240 atataaagtt ttatagaatt tatctagtta aagaatggag tgattgcaat ccaattttag 300 acgtgcacgg atccgtaatg atactagata tcactaacag tggtctaatt gaacctaaaa 360 tgtatacgtg cagagcatct tgtgatataa cattagacaa agataatgct gaagtaatat 420 ttatctcaca aaagagcaat aactatgaat tagcaggcac tacagtaatg catggctggt 480 tcaaaaatgt ggtttcagta aaattagaac atacttgtga gcatttaagt gccacctgtg 540 gtcaaaaaac aataaagttc catgcttgtt ttagacagca tagaggttgt gctcgcttct 600 tcaggaatac ctacatgcca atcgctatgg ttgaagcttt atgttctaat atagagctga 660 ttatatttgt tagttatata ttcatttgct tagctttttc ttttataata acaagaacat 720 acattgcata ccttttaata ccagtcttct atcctataac atacatatat ggaaaactgt 780 acttaaaatg tttaaaaaca tgtccaaact gtttattggc tattcatcct tttacaaatt 840 gtaaaaatat ttgcatatgt gggagtcggt ttagcaatac agagtcgcta aaagtgcata 900 gattaggcaa ttgctacgga tataaggcat tgagtggtgc tagaagtatg tgtaagtcaa 960 aaacatcatc atttgcaaca gctgtctttt ttggtatcat catattatca ttcatcacac 1020 cattgcatgg tgaaaagaca tataaactgt cagaattacc tgatgattat ataaaattag 1080 aaatgatgat aaaaaatatc aatacaaaag aaactataac tgacatccta aactatgcac 1140 taatattttc gataataatt atcacagtat gccaagatta cttttttaat ttcctttata 1200 aaggccgatt tagattttgt tcattttgcg agatgataca tgctagaaaa ggtttgaaaa 1260 tattttcaaa tatgaccaac aagtgtggaa cttgtatatg tggtttcaat caagaaataa 1320 ggtcaggctt cgattatgag atttttataa aagatatgca tatagcaaag gaatcatgca 1380 gatacaatta ctttaaatcg tacaatgtat ctatgaaaat cctcttaata ttaatgctaa 1440 taccattaat tggaactact gttgctgatg atacagtgtg tttgaaatat gatttaaaca 1500 aaggattggg tgatcttaaa aactgctatg gtttaaagtt gggtatatca aactataaat 1560 ctgtggatag tgcttacaat gagctaacag agaaaaaatt agtgtctgac ttagataagc 1620 tagatttgag tatattaaaa ggttctaaag agcatatctt tgatgcaata gaaaattcat 1680 taaatataca tcgcatggta tttttagaat atctagctta caagactaat cctaaactta 1740 aagaaattac acacaatact ggaccttata atgtggcttg gcgagctttt attcataata 1800 ataatcttga aatatgcggg agttatccat ataaattaat ttgttattgc ataaaccaga 1860 agacacactg cgaaaacaca acagttgacc atggttccca gattcaacct tattatacaa 1920 aacacccaaa tacttataaa gctgatatgg aagctttatt aaaaactatc cagattgctt 1980 tcagagggat agttaaagtt ttaattcaat tttatgttga aaataacaaa acttcagatc 2040 ttataaattt attgacggaa ttgcaaacta agatggagaa caatccccaa atgaagggta 2100 ttctaaaatt tttatgtgaa ttcatgaaaa cccctttaca agttcctaaa actatgaaga 2160 tcaatgtcaa acctgatata tctggagcta atccatttaa taatttttct acatcaaaag 2220 aaaatattac taaatgtgtt aaaatagtaa aacttagatg tataacaaaa tcaacactaa 2280 tagagcataa ttatatcttg tgtggtgaat cagaaaaaaa gatctatcaa tggcctacta 2340 aaccaaccat tatggagaat ggtaatgcct gcttaggtga caaacactgt catctacagt 2400 ttacaccaat tgaaaatgat gaagcaataa aaacagtaag ctgttataaa gaaaattttg 2460 aacaaaaccc tggcccgatg aatactcaac ttaagaagtg cgaagcatta aatgtgggaa 2520 tatgtgtaac tataaaaaac gaaaactggc ctatagtgca atgtaagaca gaattatatt 2580 attatgcaga tggcagaata catgcaaaag atgggactat caacaattat tgtttctctg 2640 aaaaatgtaa tgtggataga tttccaattc attcagatta catttccaca tgcaattggc 2700 aagaaacagc aaaagattat caacatgtta aggaattcat acatttagat atagaatctt 2760 ataaaagggc aatagaatct gatattaaaa cagatttggt aatacataaa ttccgaccaa 2820 caaaaaacct tccacatgta atcccaagat acagcagttt aatattacaa gggactgaga 2880 ctagtgatgg aatccagaat gcatttattc aaggctcttt accagctatc agtggtcttg 2940 caaatggata tcatctttat acaccaaact caaagcaatt gtttgacgtc atattatttt 3000 taagaaaagc atcatataga gcagaatata gaagaattta tacaactggc ccaactatag 3060 gaataaatgt agaacacaat gagcaatgta caggttcttg ccctaaaaca attgaaaaaa 3120 agcaaaattg gctgacattt tcaaaagaac acactagtca atgggggtgt gaagagtatg 3180 gttgccttgc gatggatgct ggctgtgtat acggatcatg tcaggatata attagacctg 3240 aaattgacat ttataagatc tatgggagtg aaaggagcat ggtagagtta tgtataacat 3300 tgcctcatga aacattctgc aatgacctgg atgtgttaga accaattatt ggtgataaaa 3360 tacaggctgc tttccagaca gttcaatcaa cacatatgcc caggctgata gctattaaaa 3420 ataataaagc atttacaggt caaataaatg atttaggcaa tactgcaagt tattgtggtt 3480 cagtccaaaa gttcaacggc actattttag gtcaaggaga tcctaaattt gactatatat 3540 gccacttatt aaagcgaaaa gatataatag tccgtaggtg ctacaacaat aactatgaat 3600 catgcaaatt tttaacacct agaccagata taataattga caagaaaaat gatatattac 3660 aagcaagtat agtaggaatg aatcttggtc agatgaattt taaaataatg ttaggtgata 3720 taaattataa tcaatataca gaaaccgaga atctagagat aacaggacaa tgtgttggat 3780 gtatagattg cagtgaagat ataatttgta gtcttaaaat aagctctcaa tctgaatcag 3840 tgtgcaaaat aacctcagaa tgcaggttat atatagaaaa tattctaatc cagccgagtg 3900 ttaatgatta caacataaag ttgacatgca ggtctaaatc tgataaattg aagatcaaca 3960 tatgcaaaca agaatttgtt ttacccttaa ccatcaaatc tcacaaccaa aaaatagatt 4020 tgtctaaatt agatgaatca aattatataa aggaagaaga tctaaggtgt gaaacaatgc 4080 tctgtaaagt aaaagatgaa gggatatcat tcattactga aggcatattt ggaggaattt 4140 cttatttttg gaaaaccata atcatatctc tagcaacaat tggcatatta gtcattttct 4200 actacatagg actgccatta tttaaaatct taaaagatta tttaaaaaga aatgaattgg 4260 aatatctagc agagagaaaa ttgaaataat tgaaatatat aaatcaatgg aatctaatag 4320 gtaattttaa ttttgttatt gcgaaaaaat taaataaata taaattacat aaaaaaacaa 4380 attattgttg gtagcacact act 4403 //