ID   JQ675600; SV 2; linear; viral cRNA; STD; VRL; 983 BP.
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AC   JQ675600;
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DT   01-MAR-2013 (Rel. 116, Created)
DT   07-MAY-2014 (Rel. 120, Last updated, Version 4)
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DE   Cat Que Virus strain VN04-2108 nucleoprotein gene, complete cds.
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KW   .
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OS   Cat Que virus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes;
OC   Bunyavirales; Peribunyaviridae; Orthobunyavirus.
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RN   [1]
RP   1-983
RX   DOI; 10.1099/vir.0.061309-0.
RX   PUBMED; 24558222.
RA   Ladner J.T., Savji N., Lofts L., Travassos da Rosa A., Wiley M.R.,
RA   Gestole M.C., Rosen G.E., Guzman H., Vasconcelos P.F., Nunes M.R.,
RA   J Kochel T., Lipkin W.I., Tesh R.B., Palacios G.;
RT   "Genomic and phylogenetic characterization of viruses included in the
RT   Manzanilla and Oropouche species complexes of the genus Orthobunyavirus,
RT   family Bunyaviridae";
RL   J. Gen. Virol. 95(Pt 5):1055-1066(2014).
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RN   [2]
RP   1-983
RA   Palacios G., Savji N., Lipkin W.I.;
RT   "Genomic and phylogenentic characterization of Jatobal and Oya viruses, two
RT   Simbu serogroup orthobunyaviruses";
RL   Unpublished.
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RN   [3]
RP   1-983
RA   Palacios G., Savji N., Lipkin W.I.;
RT   ;
RL   Submitted (13-FEB-2012) to the INSDC.
RL   Center for Infection and Immunity, Columbia University, 722 W 168th Street
RL   17th Floor, New York, NY 10032, USA
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RN   [4]
RC   Sequence update by submitter
RP   1-983
RA   Palacios G., Savji N., Lipkin W.I.;
RT   ;
RL   Submitted (01-MAY-2014) to the INSDC.
RL   Center for Infection and Immunity, Columbia University, 722 W 168th Street
RL   17th Floor, New York, NY 10032, USA
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DR   MD5; 990ed5bce03230919330696c6fed7c74.
DR   EuropePMC; PMC4507351; 26186514.
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CC   On May 1, 2014 this sequence version replaced gi:384638614.
CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..983
FT                   /organism="Cat Que virus"
FT                   /segment="S"
FT                   /host="Culex sp."
FT                   /strain="VN04-2108"
FT                   /mol_type="viral cRNA"
FT                   /country="Viet Nam"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:1495866"
FT   CDS             45..746
FT                   /codon_start=1
FT                   /product="nucleoprotein"
FT                   /db_xref="GOA:M1F379"
FT                   /db_xref="InterPro:IPR001784"
FT                   /db_xref="UniProtKB/TrEMBL:M1F379"
FT                   /protein_id="AFI24665.1"
FT                   /translation="MADAIVFNDVPQRAQSTFDPEAQYVAFENTYRANLTVNTARVFFL
FT                   NQKRAKDTLRQTPRPNVNLTFGQCTFPVVNNHFPQFQSNPVNDTALTLHRLSGYLARWL
FT                   MTFYAQSPVNQAAVREAVIIPLAEVKGCSWDDGPALYLGFAAGAEMFLQTFTFFPLVIE
FT                   MHRVLKDGMDVNFMRKVLRQRYGALTAEQWMRQEIVAIRAAFEAVGALPWARTGFSPAA
FT                   REFLAQFGIRI"
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SQ   Sequence 983 BP; 307 A; 208 C; 204 G; 264 T; 0 other;
     agtagtgtac tccacaattc aaaaacttaa agtcctttaa tagtatggca gatgcgatag        60
     ttttcaatga tgtacctcag cgggctcaat ctacgtttga tccggaggca caatatgtgg       120
     catttgaaaa tacatacagg gcaaacctca ctgttaacac cgctcgagtt ttcttcctca       180
     atcagaagag agccaaagat actttacgtc agacgccgag gcccaatgtt aatcttactt       240
     ttggacagtg cacatttcca gtggttaata accattttcc acaattccaa tcgaatccgg       300
     ttaacgatac agcccttacc ttgcaccgcc tctctggata ccttgcgaga tggctgatga       360
     ctttctatgc ccagagccca gtcaaccagg cagctgtccg tgaggcagtt atcattcccc       420
     tggctgaggt taagggttgt tcatgggatg atggacctgc cctctacctt ggatttgctg       480
     caggtgcaga gatgtttctg cagacattta ctttttttcc acttgtgatt gagatgcacc       540
     gcgtactgaa agatgggatg gatgtcaact ttatgagaaa agttctgcgc caacgatatg       600
     gcgcactgac tgcagaacaa tggatgaggc aggagatagt ggcaattagg gcagcatttg       660
     aggctgttgg cgcacttcct tgggcaagaa ctggattctc gccagctgcc agggaattcc       720
     ttgctcaatt tggaatccgt atctaaatca aaaaaagccc ccgtagttgg agtaccgata       780
     aaataaataa aaacacaaaa aaatacataa aataataaaa caaaataaaa aatataaaaa       840
     taataaaaac aaaaataaaa atatagtagt acttggacta gccgagtact acaacaatag       900
     cagctgctaa tgtcgttgta agttctccac ttcaatttat aataaggtct gtataatcat       960
     ctttgaattg ggagcacact act                                               983
//