ID JQ675599; SV 2; linear; viral cRNA; STD; VRL; 4481 BP. XX AC JQ675599; XX DT 01-MAR-2013 (Rel. 116, Created) DT 07-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Cat Que Virus strain VN04-2108 polyprotein gene, complete cds. XX KW . XX OS Cat Que virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; Orthobunyavirus. XX RN [1] RP 1-4481 RX DOI; 10.1099/vir.0.061309-0. RX PUBMED; 24558222. RA Ladner J.T., Savji N., Lofts L., Travassos da Rosa A., Wiley M.R., RA Gestole M.C., Rosen G.E., Guzman H., Vasconcelos P.F., Nunes M.R., RA J Kochel T., Lipkin W.I., Tesh R.B., Palacios G.; RT "Genomic and phylogenetic characterization of viruses included in the RT Manzanilla and Oropouche species complexes of the genus Orthobunyavirus, RT family Bunyaviridae"; RL J. Gen. Virol. 95(Pt 5):1055-1066(2014). XX RN [2] RP 1-4481 RA Palacios G., Savji N., Lipkin W.I.; RT "Genomic and phylogenentic characterization of Jatobal and Oya viruses, two RT Simbu serogroup orthobunyaviruses"; RL Unpublished. XX RN [3] RP 1-4481 RA Palacios G., Savji N., Lipkin W.I.; RT ; RL Submitted (13-FEB-2012) to the INSDC. RL Center for Infection and Immunity, Columbia University, 722 W 168th Street RL 17th Floor, New York, NY 10032, USA XX RN [4] RC Sequence update by submitter RP 1-4481 RA Palacios G., Savji N., Lipkin W.I.; RT ; RL Submitted (01-MAY-2014) to the INSDC. RL Center for Infection and Immunity, Columbia University, 722 W 168th Street RL 17th Floor, New York, NY 10032, USA XX DR MD5; 37724d02eeb287c795a99f2ba9b21f7a. XX CC On May 1, 2014 this sequence version replaced gi:384638589. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4481 FT /organism="Cat Que virus" FT /segment="M" FT /host="Culex sp." FT /strain="VN04-2108" FT /mol_type="viral cRNA" FT /country="Viet Nam" FT /collection_date="2004" FT /db_xref="taxon:1495866" FT CDS 44..4345 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:M1F492" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR005168" FT /db_xref="InterPro:IPR026400" FT /db_xref="UniProtKB/TrEMBL:M1F492" FT /protein_id="AFI24664.1" FT /translation="MIAVLLLSAVAAIASAHPLAKSHMGERCFAGGSILKDVNQTTGIG FT EVCVKDDISIIKSVVIPRKEGKVSMNWIRFYRVYIVKDWHDCNPIVDKKGDFMILDVTE FT AGTLVPKMHICRATCDISLDRDNAEIIFMSSKTNHYEVSGTTVINGWFKQTISVSLEHT FT CEHLTATCGQKTLRFHACFRQHRSCVRYFKNSYIPYRMIESMCQNLELIIMILFTFVAF FT AFSMIITRTYIAYLMIPVFYPATYIYGKLYNKYFKLCVNCNLAVHPFNNCGNLCICGSR FT FTCTEQVKVHRICGACPGYKSLSKARAMCKSKTWSFISAILAGIFLFSFITPINADERL FT YKLDELADDFIEISNKLSENQFNRMVYKITLSTILGIIMAILLSEKCVFNKMFNHFYRH FT CSICSMIHYRPGLRFNSSVTNRCGTCICGYNEQQPDENGYEIPLRDMHKQQESCKYISV FT RNHYRNMKIILIILVLTTQVITASSDEKECLKYPFVIDKINLTRCFGHFLNLTDCSLTN FT KERLFTSLKSENLITDMDKIDFDILDYKSDTAFERIEMSQDLHKMILLEYIYFKGNCEK FT LNTMKGNSGPFNVAWRTYIKAHHLDACGQLPHKIICRCISSHQYCQSADIDALSELETY FT YTTHQAAYLMDYETIITTIALAFRGIGKVLIEDFAAGNSDSELDILLTNMDYSLKTNLQ FT LRGIIRFAKMMGKMSRAKPSRLQRSSIFSISEEPELKGSQFSDFSIHNEDIKICKEPHS FT MMCYSKRQRTSQNNFLLCKIESKWKVFKWPEKPTLNTDSGLCYGDKHCNLKFPRLDADT FT AIKQVSCFKSSFTENPSGMNEQLKKCTAISVGDCDTISGVSWPVIHCKNDKYYHSDTKE FT HAKDGNINSYCLSEACKLDKLPVHKSWFKLCNWDSVVKEDLEIKEFTHLDIESYRKAIE FT SDIKTDLILNHFKLTKNLPHTVPKYRSMTVQGVDYQDGIQNAYITGTLPAISGLAAGYH FT LSAPDGQQLFDIVIFLKKAVYKARYTKIYSTGPTISINIQHNEQCTGSCPKSIPKQDGW FT LTFSKEHTSNWGCEEFGCLAIDSGCLYGSCQDVIRPEMDVYKIQGSEQTLIEICISTPH FT ETMCNDLDVLEPLIGDKIEVSFQTTQSVHMPTLMGLRKGGLYTGQINDIGNTAEMCGSV FT QLINGSLIGQGTPKFDYICHAAKRKDVIVRRCYNNHYVTCELLEKRNNILHTIQGTDMY FT ASLSGNNLGLMNFRIALGDINYKAFIKDTNFEIKGSCVGCVRCSEEIVCEMSIVSQGEI FT LCPINSECDLYMSNLLIKPEIEKYAIKMSCKKASDSVEIGICGRSGKYSLTVKPHQQKI FT DLSKLDESNFVKEEDLKCGTWLCKVKDEGIGFIFDNIFNKIGKIWSIVIYCLSGILVVM FT LLIYFIYPCCKRLKGVLEKNEMEFLAEQKIK" XX SQ Sequence 4481 BP; 1579 A; 731 C; 871 G; 1300 T; 0 other; agtagtgtac taccacatac aacaaacttt tcagagaatt aaaatgatcg ctgtactttt 60 gctatcagct gttgctgcaa tagcttcagc acaccctctt gctaaaagcc acatgggcga 120 gaggtgtttt gcaggaggct ccatattaaa agatgttaac caaactacgg gcataggtga 180 agtctgtgta aaggatgaca tatcaataat caaaagtgtc gttataccaa gaaaagaagg 240 caaggtctca atgaattgga taagattcta tagagtgtac attgtcaaag actggcacga 300 ctgtaatcca attgtagaca aaaaaggaga tttcatgata ctggatgtaa cagaggcagg 360 gactctagtc cctaaaatgc atatttgcag agctacatgt gatatatccc tcgatagaga 420 taacgcggaa atcattttca tgtcatccaa aacaaatcac tatgaagtct caggtactac 480 tgtgataaat ggctggttta agcaaactat aagtgtgtca ttagagcata cttgtgagca 540 tttaactgcc acatgtggtc aaaaaacatt aaggttccat gcttgtttta ggcaacacag 600 gtcatgtgtg aggtatttca aaaatagtta cataccatat aggatgatag aatctatgtg 660 ccagaatctt gaactaataa taatgatatt atttacgttt gtagcatttg catttagtat 720 gattataaca agaacttata ttgcttattt aatgattcct gtcttttacc cggccactta 780 tatatacgga aaactttaca ataaatactt caagttatgt gtcaattgca acttagcagt 840 gcacccgttc aataattgtg gaaatttatg tatatgtgga tccagattca catgcacaga 900 gcaagtgaag gtccatcgga tatgtggagc ttgtcccgga tacaagtcat tgagcaaagc 960 cagggctatg tgtaaatcta aaacctggtc attcatctct gctatactgg ctggtatctt 1020 cttattttca tttataacac caataaacgc agatgagaga ctgtataagt tagacgagtt 1080 agcagatgat tttatcgaaa tttctaataa attatcagag aaccaattta atagaatggt 1140 gtacaaaatc acattgtcta cgattctagg tataattatg gctatacttc tatctgaaaa 1200 atgtgttttt aataaaatgt tcaaccattt ctatagacac tgttctatat gcagcatgat 1260 acattataga cctggactaa gattcaactc atctgtgaca aataggtgcg ggacatgtat 1320 ctgtggatat aatgagcagc agccagatga aaatggttat gaaatccccc taagagacat 1380 gcacaagcaa caggagtcat gcaagtatat ttctgttaga aatcattata gaaatatgaa 1440 aataatattg attatattag ttttaaccac tcaagttatt actgcttcat ctgacgaaaa 1500 agagtgctta aaatatccat ttgttattga taaaattaac ttaacaagat gctttggcca 1560 ttttttgaat ctaacagatt gtagcctaac taacaaagag agacttttta cgagtttaaa 1620 atctgaaaac cttattactg acatggataa aatagatttt gacatactag attataaatc 1680 agatactgct tttgaaagga tagagatgtc ccaagactta cacaagatga tactattaga 1740 gtatatttat ttcaaaggaa actgcgagaa gctcaacact atgaaaggca actctgggcc 1800 attcaacgtg gcatggagga cctatattaa agcccatcat ttggatgcat gtgggcaact 1860 tccacacaaa attatatgca gatgcataag ctctcaccag tactgtcaga gtgctgatat 1920 tgatgcctta agtgaacttg agacatatta cactacacac caagctgctt acttaatgga 1980 ttatgagact atcataacaa ctatagcctt agcttttaga gggattggga aagtcttaat 2040 agaagacttt gcagcaggga attcagactc ggagctagat atacttttaa caaatatgga 2100 ttatagtttg aaaaccaatt tgcaactaag aggtataatc agatttgcta agatgatggg 2160 gaaaatgtct agagctaagc catcaagact gcagagatct tcaatatttt caataagtga 2220 ggagcctgaa ttgaaaggat ctcaattttc agacttcagt attcacaatg aggatattaa 2280 aatttgcaaa gagccccact ctatgatgtg ttattccaaa agacagagaa cttctcaaaa 2340 caatttcctt ttgtgtaaaa ttgaatccaa atggaaggtt ttcaaatggc cagaaaagcc 2400 aactctgaat actgactctg gattatgcta tggggacaag cattgtaatc tgaaattccc 2460 taggctagat gcggatactg ctatcaagca agtctcttgt ttcaagtcaa gctttacaga 2520 gaacccatca ggaatgaatg aacaactcaa gaaatgcact gctatatccg ttggtgattg 2580 tgatacaatt tctggggtct catggcctgt tattcattgt aaaaatgata aatactatca 2640 cagcgatact aaagagcatg caaaagatgg caacattaat agttactgcc tatcagaagc 2700 ttgcaaatta gataaactgc ctgttcataa gtcatggttt aaattatgca attgggattc 2760 agttgtaaaa gaagacctcg aaataaaaga atttacgcat ctcgacatcg aatcctatag 2820 aaaagctatt gagtcagata tcaaaacaga cctaatattg aaccatttca aactaacaaa 2880 aaacttgcca catacagtcc cgaaatatag atcgatgaca gttcaggggg tagactatca 2940 agatggaata cagaatgctt atataactgg aacactccca gctattagtg ggttagcagc 3000 tggttatcat cttagcgcac cagatggaca gcaactattt gatattgtaa tcttcttgaa 3060 aaaagctgtt tataaagcca gatataccaa gatttactca actgggccaa ctatatcaat 3120 taatatccaa cacaatgaac agtgtacagg gtcatgccct aaaagtatcc caaagcagga 3180 tggatggcta acgttctcta aagaacacac aagtaattgg ggctgtgaag aattcggttg 3240 tttagcaata gatagcggat gtctgtatgg atcatgccaa gatgtaatta gacccgaaat 3300 ggatgtatat aaaatacaag gttctgagca gacactgatt gagatatgca taagcacacc 3360 tcatgagact atgtgcaatg atctagatgt tttagaacct ttaataggtg acaaaataga 3420 agtatctttc caaacaactc agtctgtgca tatgccaact cttatgggct tgaggaaagg 3480 gggcctatac actggtcaaa taaatgatat tggcaatact gctgaaatgt gtggatcagt 3540 tcaattaata aacgggtcac tgataggcca gggaacacct aaatttgact atatctgcca 3600 tgctgcaaaa aggaaagatg taattgtcag gaggtgttac aacaatcact atgtaacatg 3660 tgaattgttg gagaagagaa ataatatcct gcacaccata caggggactg acatgtatgc 3720 gtcattaagt ggtaataact taggtttgat gaacttccgg attgcacttg gagatataaa 3780 ctacaaagca tttattaaag acactaattt tgaaataaaa ggatcgtgtg taggatgtgt 3840 tagatgttcc gaagaaattg tttgtgagat gtctatagtt tctcaaggtg aaatattatg 3900 cccaataaac tcagaatgtg atttatatat gagcaatcta ctaatcaagc ctgaaattga 3960 aaaatacgcc attaagatgt catgcaaaaa agcatcagat tctgttgaaa ttggaatatg 4020 tgggcggtca ggaaaataca gcttaactgt taaaccacat cagcagaaaa tcgacttgtc 4080 taaactagac gagtcaaatt ttgttaaaga agaggatctt aagtgtggaa cttggttatg 4140 caaagtcaaa gatgaaggca taggttttat tttcgataat atttttaaca agataggaaa 4200 aatttggagc attgtcatat attgtttaag tgggatcctt gttgtcatgt tgctaatata 4260 cttcatttac ccatgctgta agagattaaa aggtgtttta gagaagaacg agatggagtt 4320 cttagcggag cagaaaataa aatagatgca atgtatatag caagcgggat taaatcaact 4380 aataaacata gacgaataaa ataaaataaa atagaaccga aaggttctac acaactgcta 4440 gttaaataaa tttgaatgtt tgtacgtggt agcacactac t 4481 //