ID JQ675598; SV 2; linear; viral cRNA; STD; VRL; 6926 BP. XX AC JQ675598; XX DT 01-MAR-2013 (Rel. 116, Created) DT 07-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Cat Que Virus strain VN04-2108 polymerase gene, complete cds. XX KW . XX OS Cat Que virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; Orthobunyavirus. XX RN [1] RP 1-6926 RX DOI; 10.1099/vir.0.061309-0. RX PUBMED; 24558222. RA Ladner J.T., Savji N., Lofts L., Travassos da Rosa A., Wiley M.R., RA Gestole M.C., Rosen G.E., Guzman H., Vasconcelos P.F., Nunes M.R., RA J Kochel T., Lipkin W.I., Tesh R.B., Palacios G.; RT "Genomic and phylogenetic characterization of viruses included in the RT Manzanilla and Oropouche species complexes of the genus Orthobunyavirus, RT family Bunyaviridae"; RL J. Gen. Virol. 95(Pt 5):1055-1066(2014). XX RN [2] RP 1-6926 RA Palacios G., Savji N., Lipkin W.I.; RT "Genomic and phylogenentic characterization of Jatobal and Oya viruses, two RT Simbu serogroup orthobunyaviruses"; RL Unpublished. XX RN [3] RP 1-6926 RA Palacios G., Savji N., Lipkin W.I.; RT ; RL Submitted (13-FEB-2012) to the INSDC. RL Center for Infection and Immunity, Columbia University, 722 W 168th Street RL 17th Floor, New York, NY 10032, USA XX RN [4] RC Sequence update by submitter RP 1-6926 RA Palacios G., Savji N., Lipkin W.I.; RT ; RL Submitted (01-MAY-2014) to the INSDC. RL Center for Infection and Immunity, Columbia University, 722 W 168th Street RL 17th Floor, New York, NY 10032, USA XX DR MD5; 72b6465b6675ce53b13429ddd9c5ff0c. DR EuropePMC; PMC4507351; 26186514. DR EuropePMC; PMC5974287; 24558222. DR EuropePMC; PMC6165560; 30149496. XX CC On May 1, 2014 this sequence version replaced gi:384638564. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6926 FT /organism="Cat Que virus" FT /segment="L" FT /host="Culex sp." FT /strain="VN04-2108" FT /mol_type="viral cRNA" FT /country="Viet Nam" FT /collection_date="2004" FT /db_xref="taxon:1495866" FT CDS 57..6842 FT /codon_start=1 FT /product="polymerase" FT /db_xref="GOA:M1F365" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:M1F365" FT /protein_id="AFI24663.1" FT /translation="MNPDKIEEYRNRIELCRDPERAQEIWRALLVERHNYFSREFCDSA FT GWEYRNDVPSEDICSEVLPNDIARRVRYCTPDNYYIDTNGKIYIIDFKVAIDERSAREA FT REKYNEIFGEIFNANGIDYEIVIIKHNPTTNTTMIDSDNLRRELGHINLTIDLSWFFEL FT KDFLFGKFKDDERFLEIINQGDFTMTMPWLEEDTPELFEHRKFLEFIESMPEEERETFF FT QALGFRSDDASKWNECLQTIMDQYKSRYNSFIRKSAQEIFNTSGQYPRPTKEAIDEGWA FT EMVARVKNERNVTTDMAKQKPSFHFIWSPNSDESNSNIPKILKLSKKLQSITGVGSFVK FT AFRSLGKLMDFSGDISGYERFCNKLKIDARSTPKRLDKKIEEFTSGTCTALWEQQFKLD FT TAVITKEDRIHLMKDYFGIGNHKSFAKRLNDDLDLDKPTILDFNDPDIIRKCKAQYNNV FT EEILGKVNRLDKIGNYLDHYSPKIQSASTKMWDVVFKISKTQFWQCINDYSTLMKNMLA FT VSQYNKYNTFRVVTCANNNIFGIVMPSSDIKTKKATLVYCVVTIHSNEEDVAHLGSLYG FT TFRSSNCYVSISKAFRLDKERCQRIVSSPGLFMMTACLFIGDNNTLHFDNLLNFSFHTS FT VSITKAMLSLTEPSRYMMMNSLAMSSHVKEYISEKFAPYTKTAFSVVMTDLIKKGCYNA FT FNQREKVQLRDIHMTDYDVTQKGVQKKRDLRSIWFPGKVDLKEYINQIYMPFYFNSKGL FT HEKHHVLVDLAKTILEIEKDQRENLPEPWSEKPKKQTVNLDILIYAIAKNLNLDTSRHN FT FVRSRVENSNNLKRSITTIATFTSSKSCIKRGDFTEFKTRIQKKVDKNIKKEVKKVTIA FT NPSLIEEITNDMEIHHATYLDIKKAVPEYIDFMSTKVFDRLYEILKENKYNTERTIDII FT FKVMHEHTEFVFAFFNKGQKTAKDREIFLGEFEAKLCLYLIERIAKERCKLNPDEMISE FT PGDSKLRILEKQAEDEIRFLAKTIKNVNKELLDKLKIGAWGGDFSLDDLGHDKAHGMKL FT EINADMSKWSAQDVIYKYFWLIAMDPILYPNEKKRILYFLCNYMEKKLLLPDELMQIIL FT DQRVPRYNDIIGQMTEGYHRNWVVIERNWLQGNMNYTSSYLHSCSMSVFKDVMRECANL FT LEGEVLVNSLVHSDDNQTSICMVQNKVKDDNVIEFTIKLFEFICLTFGNQANMKKTYVT FT NFIKEFVSLFNIHGEPFSVYGRFLLTAVGDCAYLGPYEDLASRLSATQTAIKHGCPASL FT AWISIALNHWITHTTYNMLPNQINDPLPFFPTTNREEIPIEMCGLLNSELQTIALVGLE FT AGNLSYLTSLLRRMSPITHQRESVQSQCSQIKTWDLKLLTSMDLIKLKSLRYISLDSEV FT TTDDGMGETSEMRSRSLLTPRKFTTSGSLNRLISYNDFQRVISDEAEKERMFEFFVRHP FT ELLVTKGETAQEYMNSVVFRYNSKKFKESLSIQNPSQLFIEQILFSSKPVIDYTSIHDK FT IFGLQDHPDLEEMDTIIGKKTFVQSYVQIIDDLSKFDLTHDDIETVYSYCLLNDPLLVT FT ASNNIVMSVKGAEQERLGQSACRMPEMRSLKLIYHSPALVLRAYVNQSPEVPGADPDEM FT LRDLTHLEEFIEKTRLRSHMRERIEINQKKMMKRDIQFEVKELTRFYQVLYDYIKSTEH FT KIKVFILPYKVYTPIDFCAALTGNLIKDDKWHIIHFLKNIISTTHKAQVATSPDLEVQL FT AMECFRLIAHFGDMFLAEESRVPFLKGIIEKFSYKAIPVSRLYDKLRESKHRIKFIPIL FT FHMDDLTQRDLNKYDADKSDERITWNNWQVSREMNTGPIDLIITGYDRQIQIRGEDDQL FT LGAELKLARVSRETISGHAKSILNRKHGLKFEKMKKIEEMSDKLDYIVYQQRGRNRFFY FT NILPKQIILDHNSRVDKTKSIGESKWIPVCPVVVRKLYQQKRPDKDKIMRLNMQVYTLS FT KLQVNPNEYATVRKAHFQKMTFFSGPPIKSGGMDIAALMSSPSLLSLNYDTMAQASLID FT MCRVFKCEGYKEDQMAFEFLSDEVMQVDIEEQLECNPIFSVVYNTKGERGMTYKGAFRT FT ALIRECEKFEKAFDFLDMGFCSNENLSILEEIHWIVIELKTNQWSTELDQCIHMCMYRN FT NMDPEFHQFDIPKVFLEDPILRTIKWKRVRKFLEVLRDFKVKEEPWKSIIQHFCDKAFR FT LTNERIRQNQKSEGFEAFIDPEKRGGRSKFEFN" XX SQ Sequence 6926 BP; 2552 A; 1139 C; 1311 G; 1924 T; 0 other; agtagtgtac ccctaggtta caacatacaa cgattctaag aacatatcaa tcaaaaatga 60 atcctgataa aattgaggaa taccgtaata ggattgaatt gtgccgagac ccagaaagag 120 ctcaggagat atggagagct ttactggttg aaaggcataa ttacttctct agagaatttt 180 gtgattctgc aggatgggag tacaggaatg atgtgccgtc tgaagatatt tgctcagaag 240 ttctaccgaa tgatattgct aggcgggtta ggtattgcac acctgacaac tactatatag 300 acactaatgg gaaaatttac atcattgact ttaaagtagc catagatgaa agaagtgcaa 360 gggaggcccg agaaaagtac aatgaaattt ttggtgaaat attcaatgca aatggaatag 420 attatgagat cgtgattata aagcataatc caacgacaaa cactaccatg atagactcag 480 ataatttaag gagagaatta ggccacataa accttactat agacctatct tggttttttg 540 aattaaaaga cttcctattt ggaaaattta aagatgatga aagattcctg gaaattataa 600 accagggaga tttcactatg accatgccct ggcttgaaga ggatacacca gagttatttg 660 agcatagaaa gtttttagaa tttatagaat ctatgcctga agaagaacgt gagactttct 720 ttcaagcatt aggctttcgt tctgatgacg catcaaaatg gaatgaatgc ttacaaacca 780 taatggatca atataaaagt cggtataatt cctttatcag aaagagtgcc caagagatct 840 tcaatacatc tgggcaatat cctagaccaa caaaggaagc tatcgacgag ggatgggcgg 900 aaatggttgc cagagttaaa aacgaaagaa atgtaaccac tgatatggca aaacagaaac 960 ctagctttca ttttatctgg tcacccaact cggatgagtc aaattccaat ataccgaaaa 1020 tactaaaact gtcaaaaaaa ttacaatcta taacaggggt agggtcattt gtaaaggcct 1080 tccgatcact aggaaagttg atggatttca gtggcgatat ctctgggtat gagaggtttt 1140 gtaacaaatt gaaaatcgat gccaggtcga cacctaaacg attagacaaa aagatagagg 1200 agttcacatc agggacttgt actgcattat gggagcagca gtttaaattg gacacagctg 1260 ttattactaa agaagatcgg atacatttaa tgaaggatta ttttgggata ggaaatcata 1320 aatcatttgc taagagacta aatgatgatt tagatttaga taagcctacc attttggatt 1380 tcaatgatcc tgatattatc aggaaatgta aggcccaata caacaatgta gaagagatac 1440 taggaaaagt caatcgttta gacaaaattg gaaattactt agatcactat tcacccaaaa 1500 tccagagtgc aagtacaaaa atgtgggacg tggttttcaa aatatccaaa acacaatttt 1560 ggcaatgcat aaacgattac tccacactga tgaagaatat gcttgctgta tctcaataca 1620 acaaatacaa cactttccga gtagtcactt gtgcaaataa caacatcttc ggcattgtga 1680 tgccgagctc agacatcaag acaaaaaaag caacactagt atattgtgtt gtaaccattc 1740 atagcaatga agaagatgtt gcacaccttg gttcattgta tgggaccttt aggtcttcta 1800 actgttatgt cagcatatct aaggcattta gactagataa agagagatgt caaagaatag 1860 tctcttcacc aggtctattt atgatgacag catgtctatt cattggagac aataatacct 1920 tacacttcga caacctcttg aacttctcgt ttcatacatc agtctcgata acaaaggcga 1980 tgctatcttt gactgaacct tctagatata tgatgatgaa ctcgttagca atgtctagtc 2040 atgttaaaga atatatctct gaaaaattcg ccccttatac aaaaactgct ttttctgtag 2100 ttatgacaga cctaataaag aaaggttgtt acaatgcatt caatcaaaga gaaaaagtgc 2160 aattgagaga tatacatatg acagattatg atgtcacaca aaaaggtgtt cagaaaaaaa 2220 gagatctaag atcaatctgg tttcctggta aagttgatct taaagaatat ataaaccaga 2280 tatatatgcc attttacttt aactctaaag gtttgcatga gaaacatcat gttctagttg 2340 atctcgcaaa aaccattctg gagatagaaa aagatcaaag agaaaatcta ccagaaccat 2400 ggagtgaaaa gccaaaaaaa cagacagtga atcttgatat acttatatat gctattgcaa 2460 aaaacctgaa tctagacact tcaagacata attttgtaag aagtagagtt gagaattcta 2520 acaacctaaa aaggtcaata actactattg ccacttttac cagttccaaa tcatgtatca 2580 aaagagggga ttttacagaa ttcaaaacaa ggattcaaaa gaaagttgac aagaatataa 2640 aaaaagaggt aaaaaaagtc acgattgcta acccatctct gatagaagaa ataactaacg 2700 acatggaaat acatcatgca acttatttag atatcaaaaa agcagtccca gagtatatag 2760 attttatgtc taccaaagta tttgatagac tttatgaaat actaaaagaa aacaaataca 2820 atactgaaag gacaatagat attatcttta aagtaatgca tgaacataca gagtttgttt 2880 ttgcattttt taataaaggc cagaagacag ctaaagatag agaaatcttt ttaggtgaat 2940 ttgaagccaa attgtgtcta tacttaattg aaaggatagc aaaagaacgt tgcaaactca 3000 atccagatga gatgataagt gaaccgggag attctaaact tagaatactg gagaagcaag 3060 ctgaagatga aataaggttc cttgcaaaaa ctatcaaaaa tgtaaataaa gaacttttgg 3120 ataaacttaa gataggagca tggggtggag atttcagcct agatgatcta ggccatgaca 3180 aggcacatgg gatgaaatta gaaatcaatg cagacatgtc gaaatggagt gctcaagatg 3240 tgatctacaa gtacttctgg ttgattgcta tggatcccat cctataccca aatgaaaaaa 3300 agagaatcct ctatttccta tgcaattata tggaaaagaa gctactctta cctgatgagt 3360 taatgcagat aattctagat cagagagttc ctagatacaa tgatatcata gggcagatga 3420 ccgaaggtta ccacagaaat tgggtggtta ttgagagaaa ttggctccag ggaaacatga 3480 attatacatc cagttacctt catagttgtt ctatgtctgt ctttaaagat gtaatgagag 3540 agtgtgccaa tctattagaa ggggaggtgt tagttaactc tttagtacat tctgatgaca 3600 atcaaacatc catttgcatg gttcaaaaca aagtgaagga tgacaatgtt atagaattca 3660 caatcaaatt atttgaattt atctgcttga cattcggaaa ccaagcaaat atgaagaaaa 3720 cctatgttac taattttatt aaagaatttg tctctctttt taatatacat ggtgagccat 3780 tctcagtcta cggtaggttt ctattaactg ctgttggaga ctgtgcatat ttagggccat 3840 atgaagactt agcaagcaga ctctcagcta ctcaaactgc tattaaacat ggctgcccag 3900 catccttagc atggatttca atagctttaa atcattggat tacacatact acctacaaca 3960 tgttgccaaa tcaaataaat gacccattac ctttttttcc tactacaaat agagaggaaa 4020 tacccattga aatgtgcggt ctgctcaatt cagaacttca aactatagca ctagttggct 4080 tagaggcagg aaatttatca tatttaacct cactactcag aagaatgtcc cctataactc 4140 atcaaagaga gtctgtacaa agccaatgta gccagataaa gacatgggat ctaaaattgc 4200 taacatctat ggatctaatt aagttaaaat ctctaagata catttcttta gatagcgaag 4260 ttaccactga tgatggaatg ggtgaaacta gcgaaatgag gtctagatct ctcctaactc 4320 ctaggaaatt cactaccagt ggatcattaa atcgattaat atcatacaat gacttccaaa 4380 gagtaatatc cgatgaggct gaaaaagaaa gaatgtttga attttttgtc agacatcctg 4440 aattattagt aacaaaaggt gaaactgctc aagaatacat gaattctgta gtattcagat 4500 ataactcaaa gaaattcaaa gaatcactat ctatccaaaa tccatcacag cttttcatag 4560 agcagatact gttctcaagc aaacctgtta tagattacac aagcatacat gataaaatat 4620 ttggattgca agaccaccct gacttagaag aaatggacac cattataggc aagaaaacat 4680 ttgttcagag ctatgttcaa attatagatg acttgtccaa attcgattta acccatgatg 4740 atatcgaaac agtttactcg tattgcttac ttaatgaccc tttgttagta acagcatcga 4800 ataacatcgt catgtctgtt aaaggagctg aacaagaaag acttggacag tcagcttgca 4860 ggatgccaga aatgagaagt ttaaaattga tatatcactc accagcatta gtgttaagag 4920 cctatgtaaa tcagagccct gaggtgccag gtgctgatcc agatgaaatg cttagagatt 4980 tgacacatct agaggaattt attgaaaaaa ctagacttcg atctcatatg agagaaagaa 5040 tagagataaa ccagaagaaa atgatgaagc gagacatcca gttcgaagta aaagaattga 5100 ctagatttta tcaagttctc tatgattaca ttaagtctac tgagcacaaa atcaaggtct 5160 ttatactccc gtataaagtt tatacaccta ttgatttttg cgcggcactt acaggaaacc 5220 tcattaaaga tgacaaatgg catattattc acttcctcaa aaacataatt tcaaccacac 5280 acaaagctca agttgcaact tcgccagact tggaggttca gcttgctatg gagtgtttta 5340 gactcattgc tcatttcggg gatatgtttt tagcagaaga atctagagtc ccattcctca 5400 aaggaattat tgaaaagttt tcctataagg ccatccctgt gtctagactc tatgataaat 5460 taagagaatc taagcataga ataaagttta tacccatatt attccatatg gatgatttaa 5520 cacagaggga tttaaacaaa tatgatgcag acaaatctga tgagagaata acatggaaca 5580 actggcaagt atcacgggaa atgaacactg gtccgataga tctaattatt actggttatg 5640 atagacaaat tcagattcgg ggagaagatg accaattatt aggtgcagaa ttaaaattag 5700 ctagagtaag tagagaaacc atttcaggtc atgctaaatc tatccttaac agaaaacatg 5760 gcttgaagtt tgaaaagatg aagaaaatag aggaaatgtc tgataaatta gactacattg 5820 tttaccaaca gcggggcagg aataggttct tttataatat attgccgaaa cagattatat 5880 tggaccacaa ttcaagagtc gacaagacaa aaagcattgg agaatcaaaa tggatacctg 5940 tatgtccagt agtggtaaga aaattatatc agcaaaagag gccagacaaa gacaaaatta 6000 tgagattgaa tatgcaggtt tacactttga gcaaattaca agtaaatcca aatgagtatg 6060 ctacagttag gaaagcacat ttccaaaaga tgacattctt ttctggtccc cctattaaaa 6120 gcggagggat ggatatagct gcattgatgt caagcccaag tctattgagc ttgaattatg 6180 atacaatggc acaagcgtcc ctcattgata tgtgcagagt tttcaaatgt gaaggttaca 6240 aagaagacca gatggcattt gagtttttat cagatgaagt gatgcaagtc gacatagaag 6300 agcagttgga gtgtaacccc atattctctg ttgtctacaa caccaaaggt gagagaggaa 6360 tgacctacaa aggggcattt aggactgcct taataagaga atgtgagaaa ttcgaaaaag 6420 catttgactt ccttgacatg ggattttgct caaacgagaa tctatcaata ctcgaagaaa 6480 tacattggat tgtgattgaa ttaaaaacta accaatggtc aacagaatta gaccaatgta 6540 tacacatgtg tatgtataga aacaacatgg atccagagtt tcaccaattt gacatcccta 6600 aagtattctt agaagacccg attttaagga caattaagtg gaagcgtgtg cggaaatttt 6660 tagaagttct tcgagatttc aaggtcaaag aagaaccttg gaagtcaatc attcagcatt 6720 tttgcgacaa agcattcaga ttaaccaatg aaaggattag acagaaccaa aaatcagaag 6780 ggtttgaagc tttcatagac cctgaaaaaa gaggtggtag atccaaattt gaatttaatt 6840 agagtaattc agtgtgccca caaaatttaa aattcacttt aatgaccttt ttgtaaatat 6900 attaatgttc ctaggggcac actact 6926 //