ID JQ659256; SV 1; linear; viral cRNA; STD; VRL; 7428 BP. XX AC JQ659256; XX DT 10-MAR-2013 (Rel. 116, Created) DT 05-NOV-2013 (Rel. 118, Last updated, Version 4) XX DE Herbert virus strain F23/CI/2004 segment L, complete sequence. XX KW . XX OS Herbert virus strain F23/CI/2004 OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; Herbevirus. XX RN [1] RP 1-7428 RX DOI; 10.1128/JVI.01862-13. RX PUBMED; 24067954. RA Marklewitz M., Zirkel F., Rwego I.B., Heidemann H., Trippner P., Kurth A., RA Kallies R., Briese T., Lipkin W.I., Drosten C., Gillespie T.R., Junglen S.; RT "Discovery of a unique novel clade of mosquito-associated bunyaviruses"; RL J. Virol. 87(23):12850-12865(2013). XX RN [2] RP 1-7428 RA Zirkel F., Junglen S.; RT ; RL Submitted (10-FEB-2012) to the INSDC. RL Institut of Virology, University of Bonn Medical Centre, Sigmund Freud-Str. RL 25, Bonn, Nordrhein-Westfalen 53127, Germany XX DR MD5; ba9fff30ba180d362fd40cb18975f539. DR EuropePMC; PMC3838119; 24067954. XX FH Key Location/Qualifiers FH FT source 1..7428 FT /organism="Herbert virus strain F23/CI/2004" FT /segment="L" FT /host="Culex nebulosus" FT /strain="F23/CI/2004" FT /mol_type="viral cRNA" FT /country="Cote d'Ivoire" FT /collection_date="2004" FT /db_xref="taxon:1230253" FT CDS 56..7327 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:U5F076" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:U5F076" FT /protein_id="AFR34023.1" FT /translation="MENYEIIKKKFNERSNNGFQNAEIYNSLIKCRHDIFGEQICSALD FT IPIRNDVDFEVIIEDLLNKYDFRLEKYFKVTPDNYKIEDNILLIIDYKVSRSTMNIEKT FT LIKYNNAFNWVPKLLPIDFKTIVINLNPDTLMIWSNQMEFLDQYRFEINLEEIKSINDM FT LEVLEIQNSDDDIFMRNRIGDSIQVTEDWFDVDDSVVDQTLKNDVTFFDFESSLDKDIL FT GIYTKSLNSNVGMSGIEMQEIYKETIKKTQENANKTKKKMLGNLSDLEKLIPNKDNIDS FT GWRILESKLLETKSLSNNLSDSKPTVHLLVSTIDIVDPDLEMNNFKKCCLFGRLIKLLD FT WSKVIGYKNNLIRNDHFQEFFKILGEDMDMAGYETSYNSMVQEFKSNRTGFSNNTKYQK FT KSQSKSVSPNLPGIMVNDMQFLLRNFPNRKLFTSFCGIDISKSNDFKKGLVPEQTKPFS FT LSPFDESLKEQVNEIFNNIKLAQISPTQEFSKTVLKDYINKTRDIDQDNYMLYENIIKT FT KGYKICTDMSILIKNALSVANFQNYKTYRLVFSANKSSFLILLPSMSIKYAQSSICFIS FT CCFVKKGDSIEYYAGCDRYRIPVTGTEFEMLISNPIRLNKERAKRLVEAPFLMFLISSS FT FVTTGCDLDSIINYSFYSSLNITKSLMTLTEPARYILMGSSAKVSDVKSYIGEKFEPSL FT KTAFSIWIYNKIKDASYVANEKLKGIVCKDVFFDEDKVKGRGVKSIKNLPSIYFKGDLD FT LKGYLNEVFIPFYINSKGLHEFHHNIIDLTKVPCQIEIETKKDMKEFWKESDSQYCNLP FT VFLNYSAKYYQRLVKQGARYRNNVETSNMFKEPIYKIPTMTSSKSCVQVGDFFDVKIHS FT TDKKVQLALKTKMPNTRSYITIDYDPEILDDMVLYIPIDKVFSSKLFSSKMVIMDTIKT FT SKQFKTWIQGSNIGDTFRLSGKNGYYIFCICWDNLKDKFEWDSPSVGFFVNAMKLYNDS FT SKMQGITNIFPSGFTKNVNQLEYMIETGIMKANLKVYNNSYYLFEQGLRDYSHTVRENM FT EITPKDSDNSNLLKTGLYQHHDYKAIRSNIKNYTDYITKRVFDRLYDKIGEFQNKEFIK FT IAGECILSHETYYSTLFCKDQRTAKDREIYEMELEGKILLYVIERLFKTYSREDMNEMI FT SRPGDVKVLDIENSRNRLFSFATQFQSNERYKYNVYMNEINADMSKWSAKDITAKYLFL FT IALNPSLRSKEKKVISLGLCRYMRKRLILPDSAMGILLDQYSKRIDDPIIEMTNNLSTN FT CVTISQNWFQGNLNYMSSFCHSIAMDFYKDLNFDFAKTMGIDNVLTVSLVHSDDNQTGV FT CMIEKIDTLLETEKTTNIYNQSQDKKIATAIFKLLELSMRQFGFILNTKKTYISSIIKE FT FISMHNLNGEPFSVYHRFLFPVVGACSFLGPYEDLTARLSGIQTAIRHGCPPSLAICSI FT GCATEMTYGTYSMLPGMKNDPGHIFGYDRFLLPLEIGGYPFFDLSNFVELGTVANDIRL FT LRPMIAKLVNTIKYKTIEEQLLNFNSSDIKLLNEYEKFIIKFYKEFCITDLFDPSGSIG FT ETYEMSKRSLLTPRKFTTLKLIKKLTSYKHFTSMSQAEKLQNYEFMLSNKELLVSKPLD FT FEAFKQVILFRYNSRKFKESLSIQSPVQLFLEQIISSGSKCIDREFLNDIDNEPNIDLA FT EPNRNQLLGRLTFVEAFQRIRSIIQRKEISFDDMMVVYKSKITNDPLTSTCYNIEYAVE FT ELSHSAKESVYSQKLQEYRQVRSFLSTPHSIIMSLLKYIESGIEPSEDTVLYSDMMELL FT KYFIESGLQAYLRDYNYKHMNDQNLYVKEQLSIWTEVLQILYLYTTQINKRNMSILLPK FT RTYSLTEFLITLKGALQRDKFLVNYKLTFNPLKFKAKGITKLEQLDTINTAESFFRSMT FT TFMESYIKPEFRANLILQIIKNCSLGSTTISELYDLVRINCPHQFMALLNLLGDLEETT FT VKSYVSNIKSVSQAWLKEQSFRQGMIGEFDVIYYNLRSSLQVKGDNKKFTDMIFTYQRG FT LDLNQLIYKDLDIMLNKLRYDMKLDQIEFDPPISMDDNSIYFVKAWNKGIAKYTAKYYK FT DILQTDLMLCPINIHISNETNYEINDIMNSNINNMSCRYFKINDALKSYQTSRRGPISV FT LLNLKGDIDALGTFSLSSYIRFIASFQGTQKPSFASLLNFIDLFKCRDTNKTLVEAPKE FT IRTEIFCFDDANLDIEFNFDVIFKMKVKTPYSSLTTLMDIVNNKEKLVEYMMTKRDDKK FT TVRDYQKSLAILIRQFQVIQNMKMKLGVSLEADSIFVKMLHLYSLDTPAHKGFHDINSL FT PEKFFKKDKLFELDLEFVEKNVMIKLDLPNNFLEKKLEIEILEVFKKLKTEYRNFVSKE FT FPDLSWADEVEKSGFSFF" XX SQ Sequence 7428 BP; 2859 A; 964 C; 1255 G; 2350 T; 0 other; agtagtgtgc tccacagaat acactatcaa agatctatta aagctaattt aaacaatgga 60 gaattatgaa ataatcaaaa agaagttcaa tgaacggagt aacaacggct tccaaaatgc 120 tgaaatttat aattccctaa taaaatgcag acatgacata ttcggtgaac aaatctgctc 180 tgcacttgat atacctatta ggaatgatgt agattttgaa gttattattg aagatctatt 240 gaataaatat gactttagat tggaaaagta ctttaaggtg actccagata attataaaat 300 agaggacaac atattgttaa tcattgacta taaagttagt aggtcgacaa tgaatatcga 360 gaagacttta ataaagtaca ataatgcgtt taactgggtt ccaaaactac ttcctattga 420 tttcaaaacg attgtcatta atttaaatcc tgatacttta atgatatggt ctaatcaaat 480 ggagtttcta gatcagtata ggtttgaaat taatcttgaa gaaattaagt ctataaatga 540 tatgttagaa gtcttagaaa tacaaaattc tgatgatgat atattcatga gaaacagaat 600 cggtgatagt atacaggtta cagaagattg gttcgatgta gatgactcag ttgttgatca 660 aacgttgaaa aatgatgtga cattttttga tttcgaatcg tctctggata aagacatctt 720 aggaatttac acaaagtcac tgaactctaa tgttggaatg tctgggatag aaatgcagga 780 aatttacaaa gaaacaataa agaaaaccca agaaaatgct aataaaacaa aaaagaaaat 840 gttaggaaat ctatcagatc tagaaaaact cataccaaat aaggataata tagattccgg 900 atggaggata ttagaatcaa aacttttaga aacaaaatca ttaagtaata atttatctga 960 ctctaagcct actgtgcatt tacttgtatc aacaattgat atagttgatc cagacttaga 1020 aatgaacaac tttaaaaaat gttgcttgtt tggacgtctt attaaattac tagattggag 1080 taaagtaata ggttataaaa ataatttaat aaggaatgac catttccagg aatttttcaa 1140 aattttaggg gaagatatgg atatggctgg ttatgaaaca agctataatt ctatggtgca 1200 agagtttaaa agcaatcgga cgggtttttc aaataacacc aaatatcaaa aaaaatccca 1260 atcaaagagt gtttcaccta atttacccgg gataatggta aatgatatgc agtttctact 1320 aaggaatttc ccaaatcgga agctgtttac atctttttgt ggtatagata tttccaaatc 1380 aaatgatttt aaaaagggtt tggttcctga acaaactaag ccattttctc tatcaccttt 1440 tgatgagtca ttgaaagaac aagttaatga aatattcaac aatataaagt tagcacaaat 1500 tagccctaca caggagtttt ctaagactgt tttaaaagat tacataaata aaacaagaga 1560 cattgatcag gacaattata tgctatatga aaatattatt aaaactaaag gttataagat 1620 ctgtacagat atgagtatat taataaagaa tgctttgtca gtggcaaatt tccaaaatta 1680 taaaacctat agattagtat tctccgctaa taaaagttca ttcttaatat tacttccgtc 1740 tatgtcaata aagtatgcac aaagttcgat ttgttttata agttgctgct ttgtaaaaaa 1800 aggagattct atagaatatt acgctgggtg tgacaggtat agaattccag ttacaggcac 1860 agaatttgaa atgttaattt caaatccaat tagattaaac aaagagagag cgaaaagatt 1920 ggttgaagcc ccctttttaa tgttcttaat ttcatcatca tttgttacaa cagggtgtga 1980 ccttgatagt attataaatt atagttttta ttcatcttta aacattacaa aatcattaat 2040 gactttaaca gaacctgcta gatatatatt aatgggctca agcgctaaag taagtgatgt 2100 taaatcttat attggagaaa agtttgaacc ctcacttaag actgctttct ctatctggat 2160 ctataataaa attaaagatg cttcatatgt tgctaacgag aaacttaaag gtattgtttg 2220 taaggatgtt ttttttgacg aagataaagt taaaggaaga ggtgttaaat ccataaaaaa 2280 cctacctagc atatatttta aaggtgactt agatttaaag ggttatttaa atgaagtctt 2340 tatacctttt tatatcaatt caaaaggatt acatgaattc caccataaca taattgattt 2400 aactaaagtt ccttgtcaaa tagaaattga gacaaaaaag gacatgaaag aattctggaa 2460 agagtcagat agccaatatt gcaatttacc agttttctta aattattcag ccaagtatta 2520 ccaaagatta gtgaaacagg gggcaaggta tagaaacaat gttgagacaa gtaatatgtt 2580 caaagagcca atatacaaaa ttccaacaat gacaagctcc aaatcatgtg ttcaagtagg 2640 agatttcttt gatgttaaga tacatagtac agataaaaag gttcaacttg ctctaaaaac 2700 taaaatgccc aacacaagat cgtatataac aattgattat gatccagaaa tattagatga 2760 catggtttta tatataccga tagacaaagt cttttctagt aaattgttta gcagcaagat 2820 ggttataatg gatacaatta aaacgagcaa gcagtttaag acatggatac aaggttcaaa 2880 tatcggtgac acatttcgtt taagtggtaa aaatgggtat tacatttttt gcatttgttg 2940 ggataatcta aaggacaaat ttgaatggga ttcacctagt gtaggttttt ttgttaatgc 3000 catgaaatta tataatgatt caagtaaaat gcagggtata actaacatat tcccatcagg 3060 atttacaaag aatgtaaatc aactggagta tatgattgaa actgggatta tgaaagcaaa 3120 tctaaaagtc tacaataact catattatct gtttgaacaa ggtttaagag attattcaca 3180 cactgttagg gaaaatatgg aaattacccc aaaagatagt gacaacagta atctgcttaa 3240 aacaggttta taccagcatc atgattataa ggccataaga tctaacatca aaaattacac 3300 agattatata acaaaaaggg tctttgatcg actatatgat aagattggtg agtttcaaaa 3360 taaggaattc ataaaaattg caggtgaatg tatattatcg cacgaaactt attattcaac 3420 tttgttctgt aaggaccaaa gaacagcaaa agatagggag atctatgaga tggaattaga 3480 agggaaaatt ctattatatg ttatagaaag attatttaag acttattcta gagaggatat 3540 gaatgagatg attagtagac caggtgatgt caaagtgtta gatattgaaa actctaggaa 3600 cagattgttt tcttttgcaa cccagtttca atcaaatgaa cggtataagt acaatgtata 3660 tatgaatgaa ataaatgctg atatgtctaa gtggtctgca aaagatataa ctgctaaata 3720 tctcttttta atagccttga atccgagctt aagatcaaag gaaaagaaag ttatatctct 3780 gggtttatgt agatatatgc ggaagagatt aattttacca gattctgcaa tgggaattct 3840 tttagatcaa tattccaaaa gaatagatga ccctattatt gaaatgacta ataatttgtc 3900 aaccaattgc gttacaattt ctcaaaattg gttccaaggt aatttgaatt atatgagttc 3960 tttttgccat agtattgcaa tggattttta taaagattta aattttgact ttgctaaaac 4020 catgggaatt gacaacgtcc taacagtatc tctagttcat agcgatgaca atcaaacagg 4080 agtatgtatg attgagaaaa ttgataccct tctagaaaca gagaagacaa ctaatatata 4140 taatcaatca caagataaaa aaatagctac agctatattt aaattattag aattgtctat 4200 gagacaattt gggtttatat taaacacaaa aaaaacatac attagtagca taataaagga 4260 atttataagt atgcataatt taaatggaga accattctca gtttatcata gatttctatt 4320 tccagttgta ggagcatgtt catttcttgg cccatatgag gatttaacag caagattatc 4380 tggcatacaa actgctatta gacacgggtg tccaccgagt ttagcaatct gttctattgg 4440 ttgtgcaaca gaaatgacat atggaacata tagcatgtta cctggtatga aaaatgatcc 4500 aggccatata tttgggtatg ataggtttct acttcctctt gagattggtg gttacccatt 4560 ttttgactta tccaattttg tggagttagg aacagtagca aatgatataa gacttctaag 4620 acctatgatt gcaaaattag ttaacacaat aaagtataag actatagaag aacagttatt 4680 aaatttcaat agtagtgaca tcaagttatt aaatgaatat gaaaaattta ttataaaatt 4740 ctataaagag ttctgcatca cagatttatt tgatccatcg ggaagcattg gtgaaactta 4800 cgagatgtca aagaggtctt tactaacacc aagaaaattc acaacattaa aattgataaa 4860 gaagttaaca agttataagc acttcacaag catgtcacag gccgaaaaat tacaaaatta 4920 tgagttcatg ttatcaaaca aagagttatt ggtgtcaaag ccattagatt ttgaggcatt 4980 taaacaggtt atcctgttta gatacaattc aagaaagttt aaagagtctc tgtctattca 5040 aagccctgtt caattatttc tagaacaaat aatatcaagt ggttcaaaat gtattgatag 5100 agaattttta aatgacatag ataatgaacc aaatatagat cttgctgagc caaaccggaa 5160 ccaattatta ggtagactaa cttttgttga agcatttcaa agaatcagga gtattattca 5220 acgtaaggaa ataagttttg atgatatgat ggttgtgtac aaatcaaaaa taacaaatga 5280 tccactgaca tctacatgct ataatataga gtacgcagtg gaagaattat cccatagcgc 5340 taaggaatca gtatattccc agaaacttca agaatatcgt caagttaggt catttttaag 5400 tacacctcac agtattataa tgtcgttatt gaaatatatt gaatcaggaa tagagccaag 5460 tgaggacaca gttttataca gtgatatgat ggaattgctc aagtatttta ttgaatcagg 5520 gttacaggct tatttaagag attacaacta taaacatatg aatgatcaaa atttgtatgt 5580 gaaggagcaa ttatcaatat ggactgaggt tttacaaata ttgtacttat acacaacaca 5640 gataaacaaa agaaatatgt caatattgtt gcccaaaaga acttatagtt taacggagtt 5700 cttgattaca ttgaaaggtg cactccaaag ggataagttc cttgtcaact ataaattaac 5760 tttcaacccg ttaaaattta aagcaaaagg tataacaaaa ttagaacaat tagatactat 5820 caacactgca gagtcatttt ttagatcaat gacaacattc atggagagtt atataaaacc 5880 tgagtttagg gcaaatttaa tcttacaaat aattaaaaat tgtagtttag gatcaacaac 5940 aattagtgaa ttgtatgatt tagtgagaat aaattgtcca catcagttta tggcactatt 6000 gaatctgttg ggtgatctgg aggaaacaac tgttaaaagt tatgttagca atataaagag 6060 tgtctcacaa gcatggttaa aggaacaatc attcagacaa ggtatgattg gtgagtttga 6120 tgtcatttat tacaatttaa gatctagttt gcaagtgaaa ggtgataata agaaattcac 6180 tgatatgatt tttacatacc agagaggatt ggatttaaat caattgattt ataaggattt 6240 agacataatg ttaaataaac tcagatatga tatgaaattg gaccaaatag aatttgaccc 6300 acctataagt atggatgata acagtatata ctttgttaag gcctggaata aaggtatcgc 6360 aaaatacact gcaaagtatt acaaggatat attgcaaact gatttaatgt tatgtccaat 6420 aaatattcat attagtaatg agacaaatta tgaaattaat gatattatga attcaaatat 6480 aaacaatatg tcttgtaggt actttaaaat taatgatgct ttaaaatctt accaaacaag 6540 cagaagggga cctatatctg tattattaaa cctaaagggt gacattgatg cactcggtac 6600 attttctttg tctagttata ttagattcat tgctagtttt caaggtacac aaaaacccag 6660 ttttgcatca ttattgaatt ttattgattt atttaaatgc agagacacta acaaaacact 6720 ggtagaggca cctaaagaaa taaggacaga aatattttgt tttgatgatg ctaatcttga 6780 tatagaattt aactttgatg ttatatttaa gatgaaagtt aaaactccgt acagttcatt 6840 aacaacttta atggacatag tcaataacaa agagaaatta gtagaataca tgatgacaaa 6900 acgtgacgat aaaaaaacag tcagagatta tcagaaaagc ctagcaatat taatacgaca 6960 attccaagtt attcagaata tgaaaatgaa gctaggagta agtttagaag ctgattctat 7020 tttcgtaaaa atgttacatc tctattcatt ggatacacca gctcataaag gattccatga 7080 tattaacagt ttaccagaga aattctttaa aaaagataaa ctatttgaat tagatttaga 7140 atttgtggaa aaaaatgtga tgatcaaatt ggatttacca aataattttt tggaaaaaaa 7200 acttgagatt gaaattcttg aagtctttaa gaaactaaag actgaatata gaaactttgt 7260 atcaaaagaa tttcctgacc taagctgggc tgatgaagtt gaaaaatccg ggttttcatt 7320 cttttaattc actttgaata ttgttatgat attagttatt aagtcattaa atcaactagt 7380 ttaaatagga tatatatata aatggtgtat taagagaagc acactact 7428 //