ID   JQ654463; SV 1; circular; genomic DNA; STD; VRL; 2768 BP.
XX
AC   JQ654463;
XX
DT   17-MAY-2012 (Rel. 112, Created)
DT   17-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Tomato leaf curl Joydebpur virus clone HJP09 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Tomato leaf curl Joydebpur virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2768
RA   Kumar J., Tuli R.;
RT   "Evolution of a Tomato leaf curl Joydebpur virus variant in India";
RL   Unpublished.
XX
RN   [2]
RP   1-2768
RA   Kumar J., Tuli R.;
RT   ;
RL   Submitted (09-FEB-2012) to the INSDC.
RL   Agri-Biotechnology, National Agri-Food Biotechnology Institute, India,
RL   C-127, Phase-8, Mohali, Punjab 160071, India
XX
DR   MD5; feb2a79215b607c1770a8262a7e898bc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2768
FT                   /organism="Tomato leaf curl Joydebpur virus"
FT                   /segment="DNA-A"
FT                   /host="Amaranthus viridis"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collection_date="Mar-2011"
FT                   /clone="HJP09"
FT                   /db_xref="taxon:309390"
FT   gene            207..509
FT                   /gene="AV2"
FT   CDS             207..509
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="movement protein"
FT                   /db_xref="GOA:I2BJD6"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJD6"
FT                   /protein_id="AFJ54082.1"
FT                   /translation="MLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNH
FT                   FHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQEAQDVQDVQKPRCA"
FT   gene            complement(291..581)
FT                   /gene="AC5"
FT   CDS             complement(291..581)
FT                   /codon_start=1
FT                   /gene="AC5"
FT                   /product="AC5"
FT                   /db_xref="GOA:I2BJD8"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJD8"
FT                   /protein_id="AFJ54084.1"
FT                   /translation="MTLPMCWTSCLDSKDWTLHGPSHPLGTSGLLYILYILGFLFMGLF
FT                   AHAFALVTRTMGAAARLEYGLSKLRRRRTFEAGVEMIISAGRFDIISSPDD"
FT   gene            complement(304..1146)
FT                   /gene="AC6"
FT   CDS             complement(304..1146)
FT                   /codon_start=1
FT                   /gene="AC6"
FT                   /product="AC6"
FT                   /db_xref="GOA:I2BJD9"
FT                   /db_xref="InterPro:IPR006892"
FT                   /db_xref="InterPro:IPR013671"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJD9"
FT                   /protein_id="AFJ54085.1"
FT                   /translation="MECISANNVCTKLKHNKIQYLLICYGIIEIDPYLQSSIHRVRGVS
FT                   TRHVQHQCILTMVFILASLLLVIHNIIINPNKLLHQSLLLRCVLTTCNGCMPLPEHLIP
FT                   ITMHVLHSSRTGLIIKHVKYLTKVLGLIYGPTISNKEKHNTIRVILSLDVLIHPYLAQN
FT                   IDGLNTKPFTHSMGQPSSTSNITNTHDFANVLDIMSGLKRLDLTWAFTSSRHIWASVHP
FT                   VHPGLPVHGPVRPCFCFGDADNGGSSTAGIWAVEVETAAYLRGGRGNDYICWSLRHNF"
FT   gene            313..1083
FT                   /gene="AV1"
FT   CDS             313..1083
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:G9FLT1"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:G9FLT1"
FT                   /protein_id="AFJ54083.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWA
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT                   SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(1080..1484)
FT                   /gene="AC3"
FT   CDS             complement(1080..1484)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="REn"
FT                   /note="replication enhancer"
FT                   /db_xref="GOA:I2BJE0"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJE0"
FT                   /protein_id="AFJ54086.1"
FT                   /translation="MDSRTGEPITAVQAENGVFIWEITNPLYFKITEHHHRPFLMNHDI
FT                   ITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINN
FT                   VIRAVDHVLWNVLAQTMYVQSSNIIKFNIY"
FT   gene            complement(1225..1629)
FT                   /gene="AC2"
FT   CDS             complement(1225..1629)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="TrAP"
FT                   /note="transactivator protein"
FT                   /db_xref="GOA:I2BJE1"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJE1"
FT                   /protein_id="AFJ54087.1"
FT                   /translation="MRPSSPSQAHSTQVPIKVQHRQAKRGTRRRRVDLDCGCSYFIALR
FT                   CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPPPAIPNEPRHHNSPSTVQSQP
FT                   EESVGDTQMFSNLPNLDDITASDWSFLKGL"
FT   gene            complement(1532..2617)
FT                   /gene="AC1"
FT   CDS             complement(1532..2617)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="Rep"
FT                   /note="replication initiation protein"
FT                   /db_xref="GOA:I2BJE2"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJE2"
FT                   /protein_id="AFJ54088.1"
FT                   /translation="MAPPNKFRINAKNYFLTYPKCSLTKEEALSQLQNLETPVNKLFIR
FT                   VCRELHENGEPHLHVLLQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSSTDVKAYV
FT                   EKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT                   NLNSNLDRIFTPPLEVYVSPFSSSSFDQVPDELEEWAAENVFGAAARPLRPMSIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLAGPL
FT                   YSGSNQSAAQASQEGDQASSR"
FT   gene            complement(2167..2460)
FT                   /gene="AC4"
FT   CDS             complement(2167..2460)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4"
FT                   /note="suppressor of PTGS"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJE3"
FT                   /protein_id="AFJ54089.1"
FT                   /translation="MGNLIYTCSSNLRENSNAKITDSSTSFPHPGQHISIRTFRELRAL
FT                   QMSKPMWRKTETSLILEFSRSMADQLEEVSNLPTTHMPRQSIQGPKLRPSIF"
XX
SQ   Sequence 2768 BP; 744 A; 589 C; 641 G; 794 T; 0 other;
     accggatggc cgcgattttt ttcaagtggg ccccaccacg cacgtgctga caaagacaag        60
     tggaccaatt aaaaacgtcc ctcaaagctt aattatttca tggtccccta tttaaacttg       120
     gtccccaagt agtgcacaca taccaatgtg ggatccggga tccgttagta aacgactttc       180
     ctgaaaccgt tcacggtttt aggtgtatgc tagccgttaa atatctccag ctagtagaaa       240
     agacgtattc tccagatacc ttggggtacg atttaatccg ggatctaatt tcagtcatca       300
     gggctagaaa ttatgtcgaa gcgaccagca gatataatca tttccacgcc cgcctcgaag       360
     gtacgccgcc gtctcaactt cgacagccca tattccagcc gtgctgctgc ccccattgtc       420
     cgcgtcacca aagcaaaagc atgggcgaac aggcccatga acaggaagcc caggatgtac       480
     aggatgtaca gaagcccaga tgtgcctaga ggatgtgaag gcccatgtaa ggtccagtct       540
     tttgagtcca gacatgatgt ccaacacatt ggcaaagtca tgtgtgttag tgatgttact       600
     cgtggaactg ggctgaccca tcgagtgggt aaaaggtttt gtgttaagtc cgtctatgtt       660
     ctgggcaaga tatggatgga tgagaacatc aagactaaga atcacacgaa tagtgttatg       720
     tttttccttg ttagagatcg taggcccgta gataagcccc aagactttgg tgaggtattt       780
     aacatgtttg ataatgagcc cagtacggct actgtgaaga acgtgcatcg tgataggtat       840
     caggtgctca ggaagtggca tgcaaccgtt acaggtggtc aatacgcatc gaaggagcag       900
     gctctggtga agaagtttat tagggttaat aattatgttg tgtataacca gcaagaggct       960
     ggcaagtatg aaaaccatag tgagaatgca ttgatgttgt acatggcgtg tactcacgcc      1020
     tctaaccctg tgtatgctac tttgaagata cggatctatt tctatgattc cgtaacaaat      1080
     taataaatat tgaattttat tatgtttgag ctttgtacat acattgtttg cgctaataca      1140
     ttccataaca catgatcgac tgctctaatt acattgttta tactaattac agcaaaatta      1200
     tttaaaaact gcaaaacttg ggtcctaaag acccttaaga aatgaccagt ccgaggctgt      1260
     aatgtcgtcc agattcggaa ggttagaaaa catttgtgta tccccaacgc tttcctcagg      1320
     ttgtgattga actgtacttg gactgttatg atgtcgtggt tcattaggaa tggccggtgg      1380
     tggtgctcgg ttatcttgaa atacagggga tttgttatct cccagataaa cacgccattc      1440
     tctgcttgaa ctgcagtgat gggttcccct gtgcgtgaat ccatagccgt ggcagcgtaa      1500
     tgcgatgaag tatgaacagc cgcaatccag gtcaacgcga cgacgcctgg tccccctctt      1560
     ggcttgcctg tgctgcactt tgattggaac ctgagtagag tgggcctgcg agggtgatga      1620
     aggtcgcatt ctttaaagcc caatttttga gtgcggaatt cttttcctca tccaggaact      1680
     ctttatagct ggaattgggt cctggattgc agaggaagat agcgggaatt ccacctttaa      1740
     tttgaactgg ctttccgtat tttgtatttg attgccagtc cctttgggcc cccatgaatt      1800
     ccttaaagtg ctttaggtag tggggatcta cgtcatcaat gacgttgtac catgcgtcat      1860
     tactgtagac cttagggcta aggtctaggt gaccacacaa atagttgtgt ggacccagtg      1920
     acctcgccca catggtcttc cccgtcctac tatcaccctc tatcacaata ctcatgggtc      1980
     tcaaaggccg cgcagcggca ccaaagacgt tctccgcagc ccattcctca agttcatctg      2040
     gaacttgatc aaaagaagag gaagaaaaag gagaaacata aacctccaac ggaggtgtaa      2100
     aaatcctatc taaattacta tttaaattat gaaactgtaa aacataatct ttgggagctt      2160
     tctcccttaa aatattgagg gccgcagctt tggaccctga attgattgcc tcggcatatg      2220
     cgtcgttggc agattgctga cctcctctag ctgatctgcc atcgatctgg aaaactccaa      2280
     aatcaatgaa gtctccgtct ttctccacat aggctttgac atctgtagag ctcttagctc      2340
     cctgaatgtt cggatggaaa tgtgctgacc gggatgggga aacgaggtcg aagaatcggt      2400
     tatttttgca ttggaatttt ccctcaaatt ggaggagcac gtgtagatga ggttccccat      2460
     tttcgtgtag ttctctgcaa accctaataa ataatttatt tactggagtt tctaagtttt      2520
     gtaattggga aagtgcctct tctttagtaa gagagcactt gggatatgtg aggaaataat      2580
     ttttggcatt tattctgaat ttatttggag gagccattga cctggtcaat cggtgtccag      2640
     caaacttggc tatgcaattg gtgtctggtg tcctatatat atgcagacac cgaatggcat      2700
     atgtgtaatt ttcgaaatta ctttaattca aatttcaaaa tgcccaaagc ggccatccgt      2760
     ctaatatt                                                               2768
//