ID   JQ654462; SV 1; circular; genomic DNA; STD; VRL; 2770 BP.
XX
AC   JQ654462;
XX
DT   17-MAY-2012 (Rel. 112, Created)
DT   17-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Tomato leaf curl Joydebpur virus clone HJP07 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Tomato leaf curl Joydebpur virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2770
RA   Kumar J., Tuli R.;
RT   "Evolution of a Tomato leaf curl Joydebpur virus variant in India";
RL   Unpublished.
XX
RN   [2]
RP   1-2770
RA   Kumar J., Tuli R.;
RT   ;
RL   Submitted (09-FEB-2012) to the INSDC.
RL   Agri-Biotechnology, National Agri-Food Biotechnology Institute, India,
RL   C-127, Phase-8, Mohali, Punjab 160071, India
XX
DR   MD5; 3d92edfbc2f1a282142667c45b110046.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2770
FT                   /organism="Tomato leaf curl Joydebpur virus"
FT                   /segment="DNA-A"
FT                   /host="Phaseolus aureus"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collection_date="Mar-2011"
FT                   /clone="HJP07"
FT                   /db_xref="taxon:309390"
FT   gene            208..510
FT                   /gene="AV2"
FT   CDS             208..510
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="movement protein"
FT                   /db_xref="GOA:I2BJC8"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJC8"
FT                   /protein_id="AFJ54074.1"
FT                   /translation="MLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNH
FT                   FHARLEGTPPSQLRQPICQPCCCPHCPRHQSKSMGEQAHEQEAQDVQDVQKPRCS"
FT   gene            complement(292..582)
FT                   /gene="AC5"
FT   CDS             complement(292..582)
FT                   /codon_start=1
FT                   /gene="AC5"
FT                   /product="AC5"
FT                   /db_xref="GOA:I2BJD0"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJD0"
FT                   /protein_id="AFJ54076.1"
FT                   /translation="MTLPMCWTSCRDSKDWTLHGPSHPLGTSGLLYILYILGFLFMGLF
FT                   AHAFALVTRTMGAAARLAYGLSKLRRRRTFEAGVEMIISAGRFDIISSPDD"
FT   gene            complement(305..979)
FT                   /gene="AC6"
FT   CDS             complement(305..979)
FT                   /codon_start=1
FT                   /gene="AC6"
FT                   /product="AC6"
FT                   /db_xref="InterPro:IPR006892"
FT                   /db_xref="InterPro:IPR013671"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJB5"
FT                   /protein_id="AFJ54077.1"
FT                   /translation="MVFILASLLLVIHNIIVNSNKLLHERLLLRCILTTSHSCMPLPQH
FT                   LIPVTMHVLHSRRTWLIIKHVEYLTKVLGLINGPTISNKEKHNTIRVILSLDVLIHPNL
FT                   AQNIDGLNTKPFTNSLGQPSSTSNITNTHDFTYVLDIMSGLKRLDLTWAFTSPRNIWAS
FT                   VHPVHPGLPVHGPVRPCFCFGDADNGGSSTAGIWAVEVETAAYLRGGRGNDYICWSLRH
FT                   NF"
FT   gene            314..1084
FT                   /gene="AV1"
FT   CDS             314..1084
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:I2BJC9"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJC9"
FT                   /protein_id="AFJ54075.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTQR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT                   SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(1081..1485)
FT                   /gene="AC3"
FT   CDS             complement(1081..1485)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="REn"
FT                   /note="replication enhancer"
FT                   /db_xref="GOA:I2BJB6"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJB6"
FT                   /protein_id="AFJ54078.1"
FT                   /translation="MDLRTGEPITAAQAENGVFIWEITNPLYFKITEHHHRPFLMNHDI
FT                   ITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLRFLNNFAVISINN
FT                   VIRAVDHVLWNVFAQTIYVQSSNIIKFNIY"
FT   gene            complement(1226..1630)
FT                   /gene="AC2"
FT   CDS             complement(1226..1630)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="TrAP"
FT                   /note="transactivator protein"
FT                   /db_xref="GOA:I2BJC5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJC5"
FT                   /protein_id="AFJ54079.1"
FT                   /translation="MRPSSPSKAHSTLVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT                   CHDYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPPPAIPNEPRHHNSPSTIQSQP
FT                   EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT   gene            complement(1533..2618)
FT                   /gene="AC1"
FT   CDS             complement(1533..2618)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="Rep"
FT                   /note="replication initiation protein"
FT                   /db_xref="GOA:I2BJD4"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJD4"
FT                   /protein_id="AFJ54080.1"
FT                   /translation="MPPPKRFQIYAKNYFLTYPQCSLTKEDALSQLQNLSTPTNKLFIR
FT                   VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYV
FT                   EKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT                   NLNANLDRIFTPPLEVYVSPFSSSSFDQVPDELDEWAAENVVSAAARPLRPVSVVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL
FT                   YSCSNQSAAQASQEGDQASSR"
FT   gene            complement(2168..2467)
FT                   /gene="AC4"
FT   CDS             complement(2168..2467)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4"
FT                   /note="suppressor of PTGS"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJB9"
FT                   /protein_id="AFJ54081.1"
FT                   /translation="MKMGNLICTSSYSSKVNSNAKTTDSSTSFPLPGQHISIRTFRELK
FT                   ARQMSRPMWRKTETSLILEFSRSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY"
XX
SQ   Sequence 2770 BP; 760 A; 578 C; 650 G; 782 T; 0 other;
     accggatggc cgcgattttt tcctagtggg ccccacaacg cacgtgctta caaggacaat        60
     tggaccaatt agaaacgccg ctcaaagctt aattatttcg tggtccccta tataaacttg       120
     ggctccaagt agtgcactca taccaatgtg ggatccaggg atccgttagt aaacgacttt       180
     cctgaaaccg ttcacggttt taggtgtatg ctagccgtta aatatcttca gctagtagaa       240
     aagacctatt ctccagatac tctcgggtac gatttaatcc gggatttaat ttcagtcatc       300
     agggctagaa attatgtcga agcgaccagc agatataatc atttccacgc ccgcctcgaa       360
     ggtacgccgc cgtctcaact tcgacagccc atatgccagc cgtgctgctg cccccattgt       420
     ccgcgtcacc aaagcaaaag catgggcgaa caggcccatg aacaggaagc ccaggatgta       480
     caggatgtac agaagcccag atgttcctag gggatgtgaa ggcccatgta aggtccagtc       540
     ttttgagtcc cgacatgatg tccaacacat aggtaaagtc atgtgtgtta gtgatgttac       600
     tcgtggaact gggctgaccc aacgagttgg taaaaggttt tgtgttaagt ccgtctatgt       660
     tctgggcaag atttggatgg atgagaacat caagactaag aatcacacga atagtgttat       720
     gtttttcctt gttagagatc gtaggcccgt tgataagccc caagactttg gtgaggtatt       780
     caacatgttt gataatgagc caagtacggc gactgtgaag aacgtgcatc gtgacaggta       840
     tcaggtgttg aggaagtggc atgcaactgt gactggtggt caatatgcat cgaaggagca       900
     agcgctcgtg aagaagttta ttagagttaa caattatgtt gtgtataacc agcaagaggc       960
     tggcaagtat gaaaaccata gtgagaatgc attaatgttg tacatggcgt gtactcatgc      1020
     ctctaatcct gtgtatgcta ctttgaagat acggatctat ttctatgatt ccgtaacaaa      1080
     ttaataaata ttgaatttta ttatgtttga actttgtaca taaattgttt gcgcgaatac      1140
     attccataat acatgatcga cagctctaat tacattgttt atactaatta cagcaaaatt      1200
     atttaaaaac cgcaacactt gggtcctaaa tacccttaag aaatgaccag tctgaggctg      1260
     taaggtcgtc cagattcgga aggttagaaa acatttgtgt atccccaacg ctttcctcag      1320
     gttgtgattg aattgtactt ggactgttat gatgtcgtgg ttcattagga atggccggtg      1380
     gtggtgctcg gttatcttga aatacagggg atttgttatc tcccagataa acacgccatt      1440
     ctcggcctga gctgcagtga tgggttcccc tgtgcgtaaa tccatagtcg tggcagcgta      1500
     atgcgatgaa atatgaacag ccgcagtcca ggtcaacgcg acgacgcctg gtccccttct      1560
     tggctagcct gtgctgcact ttgattggaa caagagtaga gtgggccttc gagggtgatg      1620
     aaggtcgcat tctttaaagc ccaatttttg agtgcggaat tcttctcttc atccaagaac      1680
     tctttatagc tggaattggg tcctggattg cagaggaaga tagcgggaat tccaccttta      1740
     atttgaactg gctttccgta tttcgtattt gattgccagt ccctttgggc ccccatgaat      1800
     tctttaaagt gctttaggta gtggggatcg acgtcatcaa tgacgttgta ccaggcgtca      1860
     ttactgtaga ccttagggct aaggtctagg tgaccacaca aataattgtg tggacccaac      1920
     gacctagccc acatggtctt ccctgtccga ctatcaccct ctatgactac acttacgggt      1980
     ctcaaaggcc gcgcagcggc actcaccaca ttctcggcag cccattcgtc aagttcatcg      2040
     ggaacttgat caaaagaaga agaagaaaaa ggagaaacat aaacctccaa cggaggtgta      2100
     aaaatcctat ctaaatttgc atttaaatta tgaaactgta atacataatc cttgggagct      2160
     ttctccctta atatattgag ggccgcagct ttggaccctg aattgattgc ctcggcatat      2220
     gcgtcgttgg cagactgctg acctcctcta gctgatcttc catcgatctg gaaaactcca      2280
     aaatcaatga agtctccgtc tttctccaca taggccttga catctgacga gcttttagct      2340
     ccctgaatgt tcggatggaa atgtgctgac ctggtagggg aaacgaggtc gaagaatctg      2400
     ttgttttggc atttgaattt accttcgaac tgtatgagga cgtgcagatg aggttcccca      2460
     ttttcatgta attcacgaga aaccctgatg aataatttat tagtgggggt gcttaggttt      2520
     tgaagttggg aaagtgcatc ctctttagtg agggaacact gtggataggt taagaaataa      2580
     tttttagcat atatttgaaa tcgttttgga ggaggcatgt tgacttggtc aatcggtact      2640
     caacaaactt ggctatgcaa tcggtgaatg gtactcaata tatagtgtga gtaccaaatg      2700
     gcatgatcgt aattttgaaa gaaaattcaa aattcaaatc ccgacaaaag cggccatccg      2760
     cactaatatt                                                             2770
//