ID JQ654460; SV 1; circular; genomic DNA; STD; VRL; 2769 BP. XX AC JQ654460; XX DT 17-MAY-2012 (Rel. 112, Created) DT 17-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato leaf curl Joydebpur virus clone HJP3 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl Joydebpur virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2769 RA Kumar J., Tuli R.; RT "Evolution of a Tomato leaf curl Joydebpur virus variant in India"; RL Unpublished. XX RN [2] RP 1-2769 RA Kumar J., Tuli R.; RT ; RL Submitted (09-FEB-2012) to the INSDC. RL Agri-Biotechnology, National Agri-Food Biotechnology Institute, India, RL C-127, Phase-8, Mohali, Punjab 160071, India XX DR MD5; 22abf59c5630f506b81664cd4fa82760. XX FH Key Location/Qualifiers FH FT source 1..2769 FT /organism="Tomato leaf curl Joydebpur virus" FT /segment="DNA-A" FT /host="Phaseolus aureus" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="Mar-2011" FT /clone="HJP3" FT /db_xref="taxon:309390" FT gene 207..509 FT /gene="AV2" FT CDS 207..509 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I2BJC8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I2BJC8" FT /protein_id="AFJ54058.1" FT /translation="MLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNH FT FHARLEGTPPSQLRQPICQPCCCPHCPRHQSKSMGEQAHEQEAQDVQDVQKPRCS" FT gene complement(291..581) FT /gene="AC5" FT CDS complement(291..581) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="GOA:I2BJD0" FT /db_xref="UniProtKB/TrEMBL:I2BJD0" FT /protein_id="AFJ54060.1" FT /translation="MTLPMCWTSCRDSKDWTLHGPSHPLGTSGLLYILYILGFLFMGLF FT AHAFALVTRTMGAAARLAYGLSKLRRRRTFEAGVEMIISAGRFDIISSPDD" FT gene complement(304..978) FT /gene="AC6" FT CDS complement(304..978) FT /codon_start=1 FT /gene="AC6" FT /product="AC6" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:I2BJB5" FT /protein_id="AFJ54061.1" FT /translation="MVFILASLLLVIHNIIVNSNKLLHERLLLRCILTTSHSCMPLPQH FT LIPVTMHVLHSRRTWLIIKHVEYLTKVLGLINGPTISNKEKHNTIRVILSLDVLIHPNL FT AQNIDGLNTKPFTNSLGQPSSTSNITNTHDFTYVLDIMSGLKRLDLTWAFTSPRNIWAS FT VHPVHPGLPVHGPVRPCFCFGDADNGGSSTAGIWAVEVETAAYLRGGRGNDYICWSLRH FT NF" FT gene 313..1083 FT /gene="AV1" FT CDS 313..1083 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I2BJC9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I2BJC9" FT /protein_id="AFJ54059.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTQR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1080..1484) FT /gene="AC3" FT CDS complement(1080..1484) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replication enhancer" FT /db_xref="GOA:I2BJB6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I2BJB6" FT /protein_id="AFJ54062.1" FT /translation="MDLRTGEPITAAQAENGVFIWEITNPLYFKITEHHHRPFLMNHDI FT ITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLRFLNNFAVISINN FT VIRAVDHVLWNVFAQTIYVQSSNIIKFNIY" FT gene complement(1225..1629) FT /gene="AC2" FT CDS complement(1225..1629) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transactivator protein" FT /db_xref="GOA:I2BJC5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I2BJC5" FT /protein_id="AFJ54063.1" FT /translation="MRPSSPSKAHSTLVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHDYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPPPAIPNEPRHHNSPSTIQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1532..2617) FT /gene="AC1" FT CDS complement(1532..2617) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replication initiation protein" FT /db_xref="GOA:I2BJB8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I2BJB8" FT /protein_id="AFJ54064.1" FT /translation="MPPPKRFQIYAKNYFLTYPQCSLTKEDALSQLQNLSTPTNKLFIR FT VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKAYV FT EKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFSSSSFDQVPDELDKWAAENVVSAAARPLRPVSVVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSCSNQSAAQASQEGDQASSR" FT gene complement(2167..2466) FT /gene="AC4" FT CDS complement(2167..2466) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /note="suppressor of PTGS" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I2BJB9" FT /protein_id="AFJ54065.1" FT /translation="MKMGNLICTSSYSSKVNSNAKTTDSSTSFPLPGQHISIRTFRELK FT ARQMSRPMWRKTETSLILEFSRSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2769 BP; 760 A; 576 C; 649 G; 784 T; 0 other; accggatggc cgcgattttt tcctagtggg ccccacaacg cacgtgctta caaggacaat 60 tggaccaatt agaaacgccg ctcaaagctt aattatttcg tggtccccta tataaacttg 120 ggctccaagt agtgcactca taccaatgtg ggatccagga tccgttagta aacgactttc 180 ctgaaaccgt tcacggtttt aggtgtatgc tagccgttaa atatcttcag ctagtagaaa 240 agacctattc tccagatact ctcgggtacg atttaatccg ggatttaatt tcagtcatca 300 gggctagaaa ttatgtcgaa gcgaccagca gatataatca tttccacgcc cgcctcgaag 360 gtacgccgcc gtctcaactt cgacagccca tatgccagcc gtgctgctgc ccccattgtc 420 cgcgtcacca aagcaaaagc atgggcgaac aggcccatga acaggaagcc caggatgtac 480 aggatgtaca gaagcccaga tgttcctagg ggatgtgaag gcccatgtaa ggtccagtct 540 tttgagtccc gacatgatgt ccaacacata ggtaaagtca tgtgtgttag tgatgttact 600 cgtggaactg ggctgaccca acgagttggt aaaaggtttt gtgttaagtc cgtctatgtt 660 ctgggcaaga tttggatgga tgagaacatc aagactaaga atcacacgaa tagtgttatg 720 tttttccttg ttagagatcg taggcccgtt gataagcccc aagactttgg tgaggtattc 780 aacatgtttg ataatgagcc aagtacggcg actgtgaaga acgtgcatcg tgacaggtat 840 caggtgttga ggaagtggca tgcaactgtg actggtggtc aatatgcatc gaaggagcaa 900 gcgctcgtga agaagtttat tagagttaac aattatgttg tgtataacca gcaagaggct 960 ggcaagtatg aaaaccatag tgagaatgca ttaatgttgt acatggcgtg tactcatgcc 1020 tctaatcctg tgtatgctac tttgaagata cggatctatt tctatgattc cgtaacaaat 1080 taataaatat tgaattttat tatgtttgaa ctttgtacat aaattgtttg cgcgaataca 1140 ttccataata catgatcgac agctctaatt acattgttta tactaattac agcaaaatta 1200 tttaaaaacc gcaacacttg ggtcctaaat acccttaaga aatgaccagt ctgaggctgt 1260 aaggtcgtcc agattcggaa ggttagaaaa catttgtgta tccccaacgc tttcctcagg 1320 ttgtgattga attgtacttg gactgttatg atgtcgtggt tcattaggaa tggccggtgg 1380 tggtgctcgg ttatcttgaa atacagggga tttgttatct cccagataaa cacgccattc 1440 tcggcctgag ctgcagtgat gggttcccct gtgcgtaaat ccatagtcgt ggcagcgtaa 1500 tgcgatgaaa tatgaacagc cgcagtccag gtcaacgcga cgacgcctgg tccccttctt 1560 ggctagcctg tgctgcactt tgattggaac aagagtagag tgggccttcg agggtgatga 1620 aggtcgcatt ctttaaagcc caatttttga gtgcggaatt cttctcttca tccaagaact 1680 ctttatagct ggaattgggt cctggattgc agaggaagat agcgggaatt ccacctttaa 1740 tttgaactgg ctttccgtat ttcgtatttg attgccagtc cctttgggcc cccatgaatt 1800 ctttaaagtg ctttaggtag tggggatcga cgtcatcaat gacgttgtac caggcgtcat 1860 tactgtagac cttagggcta aggtctaggt gaccacacaa ataattgtgt ggacccaacg 1920 acctagccca catggtcttc cctgtccgac tatcaccctc tatgactaca cttacgggtc 1980 tcaaaggccg cgcagcggca ctcaccacat tctcggcagc ccatttgtca agttcatcgg 2040 gaacttgatc aaaagaagaa gaagaaaaag gagaaacata aacctccaac ggaggtgtaa 2100 aaatcctatc taaatttgca tttaaattat gaaactgtaa tacataatcc ttgggagctt 2160 tctcccttaa tatattgagg gccgcagctt tggaccctga attgattgcc tcggcatatg 2220 cgtcgttggc agactgctga cctcctctag ctgatcttcc atcgatctgg aaaactccaa 2280 aatcaatgaa gtctccgtct ttctccacat aggccttgac atctgacgag cttttagctc 2340 cctgaatgtt cggatggaaa tgtgttgacc tggtagggga aacgaggtcg aagaatctgt 2400 tgttttggca tttgaattta ccttcgaact gtatgaggac gtgcagatga ggttccccat 2460 tttcatgtaa ttcacgagaa accctgatga ataatttatt agtgggggtg cttaggtttt 2520 gaagttggga aagtgcatcc tctttagtga gggaacactg tggataggtt aagaaataat 2580 ttttagcata tatttgaaat cgttttggag gaggcatgtt gacttggtca atcggtactc 2640 aacaaacttg gctatgcaat cggtgaatgg tactcaatat atagtgtgag taccaaatgg 2700 catgatcgta attttgaaag aaaattcaaa attcaaatcc cgacaaaagc ggccatccgc 2760 actaatatt 2769 //