Dbfetch
ID JQ647505; SV 1; circular; genomic DNA; STD; VRL; 2750 BP. XX AC JQ647505; XX DT 16-FEB-2012 (Rel. 111, Created) DT 16-FEB-2012 (Rel. 111, Last updated, Version 1) XX DE Wheat dwarf virus isolate SXTY10-35, complete genome. XX KW . XX OS Wheat dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2750 RA Wang B., Wu B., Wang X.; RT "WDV sequences of China and Hungary obtained in 2010"; RL Unpublished. XX RN [2] RP 1-2750 RA Wang B., Wu B., Wang X.; RT ; RL Submitted (08-FEB-2012) to the INSDC. RL Chinese Academy of Agricultural Sciences, Institute of Plant Protection, RL No. 2, Yuanmingyuan West Road, Haidian, Beijing, Beijing 100193, China XX DR MD5; c0c276c4fd3189879d7949bef6d6a8e1. XX FH Key Location/Qualifiers FH FT source 1..2750 FT /organism="Wheat dwarf virus" FT /host="Triticum" FT /isolate="SXTY10-35" FT /mol_type="genomic DNA" FT /country="China:Taiyuan" FT /collection_date="08-May-2010" FT /db_xref="taxon:10834" FT misc_feature join(2512..2750,1..170) FT /note="long intergenic region" FT gene 171..443 FT /gene="V1" FT CDS 171..443 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /db_xref="GOA:B0JDB4" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B0JDB4" FT /protein_id="AFA43169.1" FT /translation="MEQAIAPPLPIRDYQYQTPSIPGSSDYAWRTFVFVTFGLLIAVGV FT AWLAYTLFLKDLILVCKAKKQRRTEEIGYGNTPARLNGDQQGLPR" FT gene 415..1197 FT /gene="V2" FT CDS 415..1197 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:H7BTF0" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:H7BTF0" FT /protein_id="AFA43170.1" FT /translation="MVTNKDSRGKGKRKMEEGESSGRWKGAVYKRRKQAYKVVPVKPPA FT LCVFRYNWLNSDRTNVVVGNTPRVDLITCFAQGKADNNRHTNQTVLYKFNIQGTCYMSD FT ASAPFIGPVRLYHWLVYDAEPKQAMPDATDIFTMPWNLLPSTWTVQRAWSHRFVVKRKW FT TVNLVTDGRKVGSKTVDQRYNWVVGKNIVDASKFFKGLRVTTEWMNTGDGKIGDIKKGA FT LYLISSTRGGVTGDSASTAFDVVCAYTHACYFKAIGIQ" FT misc_feature 1198..1369 FT /note="short intergenic region" FT gene complement(1370..2511) FT /gene="Rep" FT CDS complement(join(1370..1795,1882..2511)) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /db_xref="GOA:H7BTR3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:H7BTR3" FT /protein_id="AFA43172.1" FT /translation="MASSSTPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVR FT DYITKEVDSDVNTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEW FT SIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSESPGRHKSIYIC FT GPTRTGKTSWARSLGTHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF FT TVNPKYGKRKVIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVVHYMYEGETFINYS FT FASGEDVTASQ" FT gene complement(1717..2511) FT /gene="RepA" FT CDS complement(1717..2511) FT /codon_start=1 FT /gene="RepA" FT /product="replication-associated protein A" FT /db_xref="GOA:H7BTQ2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H7BTQ2" FT /protein_id="AFA43171.1" FT /translation="MASSSTPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVR FT DYITKEVDSDVNTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEW FT SIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSVSLESYILCTST FT PADQAQSDLEWMDDYSRSHRGGISPSTSAGQPEQERLPGQGL" XX SQ Sequence 2750 BP; 712 A; 592 C; 737 G; 709 T; 0 other; accccgcgtg gtggaaccga cgccgccctc ggcttttcgt gagtgcgcgg aggcttttgg 60 accacatctt ttctgatcac tttcgtgaaa gatggtgatt tatcacactt ttgatgtgga 120 aatgtgtgcc atgccttagc ttataaggaa gtgcgtggga gcccatctcg atggagcagg 180 caatcgcccc cccgcttcct atacgggact atcaatacca gaccccttcc attcccggtt 240 cctccgacta cgcctggcga acatttgtgt tcgttacctt cggtttgcta atagccgtag 300 gcgttgcttg gcttgcttac actctgtttc ttaaagattt aattttagtg tgtaaggcga 360 agaagcaaag gaggaccgag gaaattggtt acgggaatac accggccaga ttaaatggtg 420 accaacaagg actcccgagg taagggtaag cggaagatgg aagaaggtga atccagcgga 480 aggtggaagg gggctgtgta taagcggcgt aaacaggcgt ataaggtagt acctgtgaag 540 cccccagctc tctgcgtatt ccgctacaac tggttgaata gcgacaggac caatgttgtt 600 gtgggtaata caccccgggt cgatctgatt acctgttttg ctcagggtaa ggccgataat 660 aatcggcata caaatcagac cgtcctatac aaatttaaca tacagggtac ctgctatatg 720 tccgatgcat cagctccgtt catcggtcca gtccgcctct accactggtt agtctatgat 780 gcagagccga aacaggctat gccagacgcc actgacatct ttacgatgcc ttggaatctg 840 ctgccgagta cgtggactgt gcaacgtgct tggtcgcatc gattcgtggt gaaaaggaag 900 tggaccgtga accttgttac tgatggacgg aaggtcgggt ctaagaccgt tgaccaacgc 960 tacaactggg tagtcggcaa gaatatcgtg gacgcaagca agttcttcaa aggtttgcgt 1020 gtcacgacgg agtggatgaa cacgggtgac ggcaagatag gcgacattaa gaagggagct 1080 ctgtatctca ttagcagtac tcgtggtggt gttactggtg acagtgcctc tacggcgttt 1140 gatgttgtat gtgcctatac gcacgcgtgt tatttcaaag ccatcggcat tcagtaataa 1200 aataatattt tatttatctc atgtcattcg attacagagg ctcggctacg agcaaagaca 1260 aaccaaatta taacaaacaa caacccttac acaatgacat cggaaaacga aatacaacac 1320 cctgagatat tacatttata gaaaatgtac gccgtccgcg ctaggacagt cactgcgaag 1380 cagtgacatc ttcgccggag gcgaacgagt agttgatgaa cgtctcgcct tcatacatgt 1440 agtgaacaac agcgttagag tacatgtaat ccgactgttc gggagtcata tccttgagcc 1500 aatcttcgtc tggattaact aaaatgatgc aaggtatgcc accccgtatc acttttcgct 1560 taccgtattt tggattgacc gtgaagtcac gctgagcccc gacgaagcac ttccagttgg 1620 gtgtgaactt gaatggaatg tcgtcgatga tattatactt ggcgttgacg tcatatgttg 1680 tgaaatcaac tagactgtta taataattat gtgtccctag agaccttgcc caggaagtct 1740 ttcctgttct ggttggcccg cagatgtaga tggacttatg cctccccggt gactcctgga 1800 ataatcgtcc atccactcta agtcagattg cgcttgatcc gcaggagtgg aagtacaaag 1860 gatataggat tcgaggctta cggagtatag atgttcattt ttccagcttt caatggtctc 1920 atggcaaatg agtgattcgg ttggaaactc aggtgtgtaa gtggcaactg ggtcaggaaa 1980 tagatggcgt gccgtgtact cgaagtcttt gagacggata gaccattcaa acggaaaacg 2040 attgcaaacc atgctgagga attcctcgcg agaggaacta gattcaatga tctgtttcat 2100 atccgcatca cggtctttac gacctggagt tgaaactgcc acgaatgttc cccactcagc 2160 tgtgtttaca tcggagtcaa cctccttcgt gatgtaatca cgaacttggt tgcagtcttt 2220 ggcagcttgt atattaggat ggaatatgga gaatggagat gtatccatac ggaggtttaa 2280 ggcattggga ttggtgatgg aagcacgaag cttgttctgc acgagaacgt gcagatgtgg 2340 tgatccatct tcgtggagct ctctaacagc agcgatgtag aggggctcat atttgttcaa 2400 gagagtgcga agtgaatcca aggcgtactg tggctcaagg gtacattgag gatatgttag 2460 aaagaggtac ttggaataga cacggaacct gggtgtagat gaagaggcca tggtagtgaa 2520 cagaagtccg gcaggtcctt agcgaaaaaa cggggtgtgc cagaaaactc tatgctctac 2580 cctgcgtgga ggtgtgaatt ctgcacactg caaatgcaat gtgtccaatg ctttatatag 2640 ggcaggtttt ggcgggagaa cagggcccta gtgttcccac ggtagcgaag cgaatcgtgt 2700 gggccctgtt aggtgtgcgg tcggggggcc tccacgcggg atataatatt 2750 //