Dbfetch
ID JQ647454; SV 1; circular; genomic DNA; STD; VRL; 2749 BP. XX AC JQ647454; XX DT 16-FEB-2012 (Rel. 111, Created) DT 16-FEB-2012 (Rel. 111, Last updated, Version 1) XX DE Wheat dwarf virus isolate HUNGARY-PC10-1, complete genome. XX KW . XX OS Wheat dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2749 RA Wang B., Wu B., Wang X.; RT "WDV sequences of China and Hungary obtained in 2010"; RL Unpublished. XX RN [2] RP 1-2749 RA Wang B., Wu B., Wang X.; RT ; RL Submitted (08-FEB-2012) to the INSDC. RL Chinese Academy of Agricultural Sciences, Institute of Plant Protection, RL No. 2, Yuanmingyuan West Road, Haidian, Beijing, Beijing 100193, China XX DR MD5; cd337481f7712af665f6ead6206ece97. XX FH Key Location/Qualifiers FH FT source 1..2749 FT /organism="Wheat dwarf virus" FT /host="Triticum" FT /isolate="HUNGARY-PC10-1" FT /mol_type="genomic DNA" FT /country="Hungary:Pecs" FT /collection_date="29-Apr-2010" FT /db_xref="taxon:10834" FT misc_feature join(2511..2749,1..170) FT /note="long intergenic region" FT gene 171..443 FT /gene="V1" FT CDS 171..443 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /db_xref="GOA:H7BTA5" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:H7BTA5" FT /protein_id="AFA42968.1" FT /translation="MEQAIAPPLPIRDYQYQTPSNPGASDYAWRTFVFVTFGLLIAVGV FT AWLAYTLFLKDLILVCKAKKQRRTEEIGYGNTPARLNGDQQGLPR" FT gene 415..1197 FT /gene="V2" FT CDS 415..1197 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:Q4LAS1" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q4LAS1" FT /protein_id="AFA42965.1" FT /translation="MVTNKDSRGKGKRKLEEGESSGRWKGAVYKRRKQAYKVVPVKPPA FT LCVFRYNWLNSDRTNIVVGNTPRVDLITCFAQGKADNNRHTNQTVLYKFHIQGTCYMSD FT ASAPFIGPVRLYHWLVYDAEPKQAMPDATDIFTMPWNLLPSTWTVQRAWSHRFVVKRKW FT TVNLVTDGRKVGSKTVDQRYNWVVGKNIVDANKFFKGLRVTTEWMNTGDGKIGDIKKGA FT LYLISSTRGGVTGDSASTAFDVVCAYTHACYFKAIGIQ" FT misc_feature 1198..1368 FT /note="short intergenic region" FT gene complement(1369..2510) FT /gene="Rep" FT CDS complement(join(1369..1794,1881..2510)) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /db_xref="GOA:H7BTS1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:H7BTS1" FT /protein_id="AFA42967.1" FT /translation="MASSSAPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVR FT DYITKEVDSDANTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEW FT SIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSESPGRHKSIYIC FT GPTRTGKTSWARSLGTHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF FT TVNPKYGKRKVIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVVHYMYEGETFINYS FT FASGEDVTASQ" FT gene complement(1716..2510) FT /gene="RepA" FT CDS complement(1716..2510) FT /codon_start=1 FT /gene="RepA" FT /product="replication-associated protein A" FT /db_xref="GOA:H7BT96" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H7BT96" FT /protein_id="AFA42966.1" FT /translation="MASSSAPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVR FT DYITKEVDSDANTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEW FT SIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSVSLESYILCTST FT PADQAQSDLEWMDDYSRSHQGGISPSTSAGQPEQERLPGHGL" XX SQ Sequence 2749 BP; 713 A; 597 C; 737 G; 702 T; 0 other; accccgcgtg gtggcccccg acgcgcactc ggcttttcgt gagtgcgcgg aggcttttgg 60 accacatctt ttctgagaac tttcgtggaa ggtggtgatt tatcacactt ttgacgcgga 120 aatatgtgcc atgccttagc ttataaggaa gtgcgtggta gcccatctcg atggagcagg 180 caatagcccc cccgcttcct atacgggact atcaatacca gaccccttcc aatcccggtg 240 cctccgacta cgcctggcga acatttgtgt tcgttacctt cggtttgcta atagccgtag 300 gcgttgcttg gcttgcttac actctgtttc tgaaagattt aattttagtg tgtaaggcga 360 agaagcaaag gaggaccgag gaaattggtt acgggaatac accggccaga ttaaatggtg 420 accaacaagg actcccgagg taaggggaaa cgtaagctcg aagagggtga atccagcgga 480 agatggaagg gggctgtgta taagcggcgt aaacaggcgt ataaggtagt acctgtgaag 540 ccaccagctc tctgcgtatt ccgctacaac tggttgaata gcgacaggac caatattgtt 600 gtgggtaata caccccgggt cgatctgatt acctgttttg ctcagggtaa ggccgataat 660 aatcggcata caaatcagac cgtcctatac aaatttcaca tacagggtac ctgctatatg 720 tccgatgcat cagctccgtt catcggtcca gtccgcctct accactggtt agtctatgat 780 gcagagccga aacaggcaat gccagacgcc actgacatct ttacgatgcc ttggaatctg 840 ctgccgagta cgtggactgt gcaacgtgct tggtcgcatc gattcgtggt gaaaaggaag 900 tggaccgtga accttgttac tgatggacgg aaggtcgggt ctaagaccgt tgaccaacgc 960 tacaactggg tagtcggcaa gaatatcgtg gacgccaaca agttcttcaa aggtttgcgt 1020 gtcacgacgg agtggatgaa cacgggtgac ggcaagatag gcgacattaa gaagggagca 1080 ctgtatctca ttagcagtac tcgtggtggt gtcactggtg acagtgcctc tacggcgttt 1140 gatgttgtat gtgcctatac gcacgcgtgt tatttcaaag ccatcggcat tcagtaataa 1200 aataatattt tatttatctc atgtcattcg attacagagg ctcggctacg agcaaagaca 1260 aaccaaatta taacaaaaaa caaccctcac acaaaaacat cgaaaacgaa atacaacacc 1320 ctgagatatt acatttatag aaactgtacg ccgtccgcgc taggacagtc actgcgaagc 1380 agtgacatct tcgccggagg cgaacgagta gttgatgaac gtctcgcctt catacatgta 1440 gtgaacaaca gcgttagagt acatgtaatc cgactgttcg ggagtcatat ccttgagcca 1500 atcttcgtct ggattaacta aaatgatgca aggtatacca ccccgtatca cttttcgctt 1560 accatatttt ggattgaccg tgaagtcacg ctgagccccg acgaagcact tccagttggg 1620 tgtgaacttg aatggaatgt cgtcgatgat attatatttg gcgttgacgt catatgttgt 1680 gaaatcaact agactgttat aataattgtg tgtccctaga gaccgtgccc aggaagtctt 1740 tcctgttctg gttggcccgc agatgtagat ggacttatgc ctccctggtg actcctggaa 1800 taatcgtcca tccactctaa gtcagattgc gcttgatccg caggagtgga agtacaaagg 1860 atataggatt cgaggcttac ggagtagaga tgttcatttt tccagctttc aatggtctca 1920 tggcaaatga gtgattcggt tggaaactca ggtgtgtaag tggcaactgg gtcaggaaat 1980 agatggcgtg ccgtgtactc gaagtctttg agacggatag accattcaaa cggaaaacga 2040 ttgcaaacca tgctgaggaa ttcctcgcga gaggaactag attcaatgat ctgtttcata 2100 tccgcatcac ggtctttacg acctggagtt gaaacagcca cgaatgttcc ccactcagct 2160 gtgtttgcat cggagtcaac ctccttcgtg atataatcac gaacttggtt gcagtctttg 2220 gcagcttgta tatttggatg gaatatggag aatggagatg tatccatacg gaggttaaga 2280 gcattgggat tggtgatgga agcacgaagc ttgttctgca cgagaacgtg cagatgtggt 2340 gatccatctt cgtggagctc tctaacagca gcgatgtaga ggggctcata tttgttcaag 2400 agagtgcgaa gtgaatccaa ggcgtactgt ggctcaaggg tacattgagg atatgttaga 2460 aagaggtact tggaatagac acggaacctg ggtgcagatg aagaggccat ggtagtgaac 2520 agaagtccgg caggtcctta gcgaaaaaac ggggtgtgcc agaaaactct atgctctacc 2580 ctgcgtggag gtgtgaattc tgcacactgg aattgcaatg tgtccaatgc tttttatagg 2640 gcaggttttg gcgggagaac agggcccttg tgttcccacg ggagcgtagc gtatcgtgtg 2700 ggccctgttc ggtgtgcggt cggggggcct ccacgcgggt tataatatt 2749 //