ID   JQ624880; SV 1; circular; genomic DNA; STD; VRL; 2882 BP.
XX
AC   JQ624880;
XX
DT   10-MAY-2012 (Rel. 112, Created)
DT   09-AUG-2012 (Rel. 113, Last updated, Version 3)
XX
DE   Maize streak Reunion virus isolate MSRV-RE_StP_PR50_2009, complete genome.
XX
KW   .
XX
OS   Maize streak Reunion virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2882
RX   DOI; 10.1007/s00705-012-1314-y.
RX   PUBMED; 22543634.
RA   Pande D., Kraberger S., Lefeuvre P., Lett J.M., Shepherd D.N., Varsani A.,
RA   Martin D.P.;
RT   "A novel maize-infecting mastrevirus from La Reunion Island";
RL   Arch. Virol. 157(8):1617-1621(2012).
XX
RN   [2]
RP   1-2882
RA   Varsani A., Pande D., Kraberger S., Lett J.-M., Martin D.P.;
RT   ;
RL   Submitted (06-FEB-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; c9180aa74b5bbd24dee1f6e39d144a6f.
DR   EuropePMC; PMC4594918; 26437663.
XX
CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2882
FT                   /organism="Maize streak Reunion virus"
FT                   /host="maize"
FT                   /isolate="MSRV-RE_StP_PR50_2009"
FT                   /mol_type="genomic DNA"
FT                   /country="Reunion"
FT                   /lat_lon="21.32 S 55.46 E"
FT                   /isolation_source="Zea mays"
FT                   /collection_date="04-Mar-2009"
FT                   /db_xref="taxon:1182518"
FT   CDS             1..309
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:I1Z772"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:I1Z772"
FT                   /protein_id="AFJ15132.1"
FT                   /translation="MEAPSTLQVYPQPLSLVTQSPPAPPAGDPWFRVVFVLVIALICLG
FT                   IVYLSYRWFIRDVIILLRAKRQRSTEEIGFGNTPARADGGFPIHGRGTDRQGPVPPV"
FT   CDS             360..1106
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:I1Z773"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:I1Z773"
FT                   /protein_id="AFJ15133.1"
FT                   /translation="MAGSSRKRTRRGDEVAWNSKRSRLSAQRNASKRVPRNPRVRPSLQ
FT                   IQTITNGSSSMVPVKQPGYCGLLGTYSRGSDENQRHTSETMTYKIALDLHFSITSAAAA
FT                   YSNSGTGVLWLIYDSQPNGAQPTLKDIFAYEDSLVAWPYTWKVSREVCHRFVVKRRYTF
FT                   TLESNGRRNDEQPPSNSVWPPCKTHLYFHKFAKGLGVRTEWKNDTAGSVGNIKKGALYI
FT                   GIAPGNGVEFNVFGKTRLYFKSIGNQ"
FT   CDS             complement(join(1298..1708,1801..2553))
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:I1Z775"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:I1Z775"
FT                   /protein_id="AFJ15135.1"
FT                   /translation="MSAFGNHFVHMPSVQAGVFNPMPGSDYPSEEEDLHQQNTPVGPDP
FT                   PRRNFQFKSANAFLTYPRCLLTPFEAGQHLWEVARHWTPSYVLASSESHQDGTPHLHVL
FT                   LQTMRPMSTRDPSFFDIQGYHPNIQASRSPNKTREYILKSPITVYSRGTFIPRAGTSGA
FT                   GYGSTPVPKRNEIMRGIIETTTNKAEYLSEVQKAFPFEWATKLQQFEYSAERLFPTLPS
FT                   PFVPPHPPSEPDLHCYETIRSWKDENIFQGDAASRTSRPRSLYIVGPTRTGKTTWARSI
FT                   DPVNHNYWQNGVDFLKYRKSAKYNVLDDIPFKFCPCWKQLVGGQKDYTVNPKYARRMEV
FT                   PGGIPSIILVNYDEDWLKVMTPAQLEYFYDNCVVYQMELHEKFYTPS"
FT   CDS             complement(1609..2553)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:I1Z774"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:I1Z774"
FT                   /protein_id="AFJ15134.1"
FT                   /translation="MSAFGNHFVHMPSVQAGVFNPMPGSDYPSEEEDLHQQNTPVGPDP
FT                   PRRNFQFKSANAFLTYPRCLLTPFEAGQHLWEVARHWTPSYVLASSESHQDGTPHLHVL
FT                   LQTMRPMSTRDPSFFDIQGYHPNIQASRSPNKTREYILKSPITVYSRGTFIPRAGTSGA
FT                   GYGSTPVPKRNEIMRGIIETTTNKAEYLSEVQKAFPFEWATKLQQFEYSAERLFPTLPS
FT                   PFVPPHPPSEPDLHCYETIRSWKDENIFQVHPYIYMLEHPHCQSVEQAAESLKWMDECT
FT                   RGMLRHAPQDQGASTSLGLHARARLPGPEASTQ"
XX
SQ   Sequence 2882 BP; 706 A; 680 C; 813 G; 683 T; 0 other;
     atggaggcgc catcgacgtt gcaggtatac ccgcagccct tgagcctagt aacccagtct        60
     ccgccggcac cccccgccgg cgatccgtgg ttccgtgtcg tctttgtgtt ggttattgca       120
     ctcatctgct taggtattgt gtacctgtct tatcggtggt tcatcagaga tgtcatcata       180
     ctgcttaggg cgaagagaca gcggagcacg gaagagattg gtttcggcaa tactccagct       240
     agggccgacg gtggattccc aatccacgga cgaggaactg ataggcaggg ccctgttcct       300
     cctgtctagg gcagggaagc tcttagacga gcttcaggaa gagctctact acgagaccga       360
     tggcagggag ttcgcgcaag aggacccgtc ggggggacga ggtggcctgg aactcgaaga       420
     gatccaggtt gagcgctcaa cggaacgcct cgaagagggt ccccagaaat ccaagggtgc       480
     gccccagtct ccagatccag acaattacca acggaagctc aagcatggtt ccggttaagc       540
     aaccggggta ctgtggtctc ctcgggactt attcccgagg ctctgatgag aatcagaggc       600
     acaccagcga gactatgacg tataaaatag cgttagatct gcatttcagt attacttctg       660
     ctgccgctgc ttatagcaat tcaggtactg gggtcttgtg gctgatttac gattcacagc       720
     cgaacggagc tcagcctacg ttgaaggaca tcttcgctta cgaggattca ctggtagcgt       780
     ggccatacac ctggaaggtc tcaagagagg tctgtcatcg ctttgtggtt aaacggaggt       840
     acacgttcac actcgagtca aatggaagaa ggaatgatga gcagccgcca tcaaactcag       900
     tttggccgcc ttgtaagact cacctgtact tccacaagtt cgctaagggt ttgggcgtga       960
     ggacggagtg gaagaacgat acagccggta gtgttggtaa catcaagaaa ggagcactgt      1020
     acataggtat agctccaggt aacggagttg agtttaatgt gtttggcaag acccgtctgt      1080
     acttcaaaag cattggaaat caataagaaa cttttattta aataacctgg tactccaggt      1140
     tattatgttc gtgtacaaaa cactgattac attgaggtcg cttgcgacca aagaaaacac      1200
     acattaataa gggcggacag gacaaagcag gcggcatacg ggcgcgatag gggcaacaca      1260
     ctgaaaaaaa atcacacaat agtaatgaaa tcactcccta agagggagtg tagaacttct      1320
     catgaagttc catctgatac acaacgcagt tgtcgtagaa gtactccagc tgcgctggag      1380
     tcatcacctt aagccagtcc tcatcgtaat tgacgagaat gatcgaggga atgcctcccg      1440
     gtacttccat cctgcgtgca tacttagggt taacggtgta gtccttctgc cccccgacca      1500
     gctgcttcca gcacgggcag aacttgaagg gtatgtcgtc cagaacgttg tacttggcag      1560
     acttcctgta cttcaggaag tccaccccgt tctgccagta gttgtggttc actgggtcga      1620
     tgcttcgggc ccaggtagtc ttgcccgtgc gtgtaggccc aacgatgtag aggctccttg      1680
     gtcttgaggt gcgtgacgca gcatccccct ggtgcattcg tccatccact tcagggactc      1740
     tgcagcttgc tctacagatt gacagtgagg atgttcgagc atgtagatgt atgggtgtac      1800
     ctgaaagatg ttctcgtcct tccaggatcg gatggtctcg tagcagtgca ggtcgggttc      1860
     cgagggtgga tgaggtggca cgaaaggtga tggtagtgtt gggaagagac gctctgccga      1920
     gtactcgaac tgttgtagtt tagtagccca ctcaaaaggg aaggccttct ggacttcgga      1980
     taggtactcg gctttgttgg ttgtggtttc gataatgcca cgcattatct cgttacgctt      2040
     tggaacaggg gtactcccgt aaccggctcc tgatgtaccg gctctgggaa tgaaagtacc      2100
     tctggagtaa acggtgatcg gactcttgag gatgtactct ctagtcttat taggacttcg      2160
     agaagcctgg atgttagggt ggtaaccctg aatgtcaaaa aaactaggat ccctagtaga      2220
     cataggacgc atagtctgta gtaaaacatg aagatgtgga gtcccatcct ggtgagactc      2280
     agaagaagca agaacgtagc taggagtcca atgacgtgcg acctcccaga gatgctgccc      2340
     tgcctcgaac ggggtgagta ggcagcgggg gtaagtgagg aaggcatttg cagacttgaa      2400
     ctggaagtta cgccttggtg gatctggtcc tacaggggtg ttctgctggt ggaggtcttc      2460
     ctcctcggag gggtagtcag agccaggcat agggttgaag accccagcct gaacggaggg      2520
     catatgcacg aagtggttgc cgaacgcact catgctctgg gacttggtcg cacaacgggg      2580
     caaggagtct gagaagatac tcaccttctc aactctatcc cttacctgcg tttttgtttc      2640
     cgcctcacag cttctcagca agcgtactta tagtacgcaa tgttgggcct tgagtccagg      2700
     cgcggcccaa aaacgcgaaa aataatatta cgagcgtttt tagggcccgc gactgcgacg      2760
     tccacatggc tctgtatgtg gacggagcgc actacaggta aagcgggagg gaatcccccg      2820
     tgcaataatt tagactttcc tagtcattct ttattaaaga agaggttacc ccacagaacg      2880
     tg                                                                     2882
//