Dbfetch
ID JQ624880; SV 1; circular; genomic DNA; STD; VRL; 2882 BP. XX AC JQ624880; XX DT 10-MAY-2012 (Rel. 112, Created) DT 09-AUG-2012 (Rel. 113, Last updated, Version 3) XX DE Maize streak Reunion virus isolate MSRV-RE_StP_PR50_2009, complete genome. XX KW . XX OS Maize streak Reunion virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2882 RX DOI; 10.1007/s00705-012-1314-y. RX PUBMED; 22543634. RA Pande D., Kraberger S., Lefeuvre P., Lett J.M., Shepherd D.N., Varsani A., RA Martin D.P.; RT "A novel maize-infecting mastrevirus from La Reunion Island"; RL Arch. Virol. 157(8):1617-1621(2012). XX RN [2] RP 1-2882 RA Varsani A., Pande D., Kraberger S., Lett J.-M., Martin D.P.; RT ; RL Submitted (06-FEB-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private Bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; c9180aa74b5bbd24dee1f6e39d144a6f. DR EuropePMC; PMC4594918; 26437663. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2882 FT /organism="Maize streak Reunion virus" FT /host="maize" FT /isolate="MSRV-RE_StP_PR50_2009" FT /mol_type="genomic DNA" FT /country="Reunion" FT /lat_lon="21.32 S 55.46 E" FT /isolation_source="Zea mays" FT /collection_date="04-Mar-2009" FT /db_xref="taxon:1182518" FT CDS 1..309 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:I1Z772" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:I1Z772" FT /protein_id="AFJ15132.1" FT /translation="MEAPSTLQVYPQPLSLVTQSPPAPPAGDPWFRVVFVLVIALICLG FT IVYLSYRWFIRDVIILLRAKRQRSTEEIGFGNTPARADGGFPIHGRGTDRQGPVPPV" FT CDS 360..1106 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:I1Z773" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:I1Z773" FT /protein_id="AFJ15133.1" FT /translation="MAGSSRKRTRRGDEVAWNSKRSRLSAQRNASKRVPRNPRVRPSLQ FT IQTITNGSSSMVPVKQPGYCGLLGTYSRGSDENQRHTSETMTYKIALDLHFSITSAAAA FT YSNSGTGVLWLIYDSQPNGAQPTLKDIFAYEDSLVAWPYTWKVSREVCHRFVVKRRYTF FT TLESNGRRNDEQPPSNSVWPPCKTHLYFHKFAKGLGVRTEWKNDTAGSVGNIKKGALYI FT GIAPGNGVEFNVFGKTRLYFKSIGNQ" FT CDS complement(join(1298..1708,1801..2553)) FT /codon_start=1 FT /product="replication associated protein" FT /db_xref="GOA:I1Z775" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I1Z775" FT /protein_id="AFJ15135.1" FT /translation="MSAFGNHFVHMPSVQAGVFNPMPGSDYPSEEEDLHQQNTPVGPDP FT PRRNFQFKSANAFLTYPRCLLTPFEAGQHLWEVARHWTPSYVLASSESHQDGTPHLHVL FT LQTMRPMSTRDPSFFDIQGYHPNIQASRSPNKTREYILKSPITVYSRGTFIPRAGTSGA FT GYGSTPVPKRNEIMRGIIETTTNKAEYLSEVQKAFPFEWATKLQQFEYSAERLFPTLPS FT PFVPPHPPSEPDLHCYETIRSWKDENIFQGDAASRTSRPRSLYIVGPTRTGKTTWARSI FT DPVNHNYWQNGVDFLKYRKSAKYNVLDDIPFKFCPCWKQLVGGQKDYTVNPKYARRMEV FT PGGIPSIILVNYDEDWLKVMTPAQLEYFYDNCVVYQMELHEKFYTPS" FT CDS complement(1609..2553) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:I1Z774" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I1Z774" FT /protein_id="AFJ15134.1" FT /translation="MSAFGNHFVHMPSVQAGVFNPMPGSDYPSEEEDLHQQNTPVGPDP FT PRRNFQFKSANAFLTYPRCLLTPFEAGQHLWEVARHWTPSYVLASSESHQDGTPHLHVL FT LQTMRPMSTRDPSFFDIQGYHPNIQASRSPNKTREYILKSPITVYSRGTFIPRAGTSGA FT GYGSTPVPKRNEIMRGIIETTTNKAEYLSEVQKAFPFEWATKLQQFEYSAERLFPTLPS FT PFVPPHPPSEPDLHCYETIRSWKDENIFQVHPYIYMLEHPHCQSVEQAAESLKWMDECT FT RGMLRHAPQDQGASTSLGLHARARLPGPEASTQ" XX SQ Sequence 2882 BP; 706 A; 680 C; 813 G; 683 T; 0 other; atggaggcgc catcgacgtt gcaggtatac ccgcagccct tgagcctagt aacccagtct 60 ccgccggcac cccccgccgg cgatccgtgg ttccgtgtcg tctttgtgtt ggttattgca 120 ctcatctgct taggtattgt gtacctgtct tatcggtggt tcatcagaga tgtcatcata 180 ctgcttaggg cgaagagaca gcggagcacg gaagagattg gtttcggcaa tactccagct 240 agggccgacg gtggattccc aatccacgga cgaggaactg ataggcaggg ccctgttcct 300 cctgtctagg gcagggaagc tcttagacga gcttcaggaa gagctctact acgagaccga 360 tggcagggag ttcgcgcaag aggacccgtc ggggggacga ggtggcctgg aactcgaaga 420 gatccaggtt gagcgctcaa cggaacgcct cgaagagggt ccccagaaat ccaagggtgc 480 gccccagtct ccagatccag acaattacca acggaagctc aagcatggtt ccggttaagc 540 aaccggggta ctgtggtctc ctcgggactt attcccgagg ctctgatgag aatcagaggc 600 acaccagcga gactatgacg tataaaatag cgttagatct gcatttcagt attacttctg 660 ctgccgctgc ttatagcaat tcaggtactg gggtcttgtg gctgatttac gattcacagc 720 cgaacggagc tcagcctacg ttgaaggaca tcttcgctta cgaggattca ctggtagcgt 780 ggccatacac ctggaaggtc tcaagagagg tctgtcatcg ctttgtggtt aaacggaggt 840 acacgttcac actcgagtca aatggaagaa ggaatgatga gcagccgcca tcaaactcag 900 tttggccgcc ttgtaagact cacctgtact tccacaagtt cgctaagggt ttgggcgtga 960 ggacggagtg gaagaacgat acagccggta gtgttggtaa catcaagaaa ggagcactgt 1020 acataggtat agctccaggt aacggagttg agtttaatgt gtttggcaag acccgtctgt 1080 acttcaaaag cattggaaat caataagaaa cttttattta aataacctgg tactccaggt 1140 tattatgttc gtgtacaaaa cactgattac attgaggtcg cttgcgacca aagaaaacac 1200 acattaataa gggcggacag gacaaagcag gcggcatacg ggcgcgatag gggcaacaca 1260 ctgaaaaaaa atcacacaat agtaatgaaa tcactcccta agagggagtg tagaacttct 1320 catgaagttc catctgatac acaacgcagt tgtcgtagaa gtactccagc tgcgctggag 1380 tcatcacctt aagccagtcc tcatcgtaat tgacgagaat gatcgaggga atgcctcccg 1440 gtacttccat cctgcgtgca tacttagggt taacggtgta gtccttctgc cccccgacca 1500 gctgcttcca gcacgggcag aacttgaagg gtatgtcgtc cagaacgttg tacttggcag 1560 acttcctgta cttcaggaag tccaccccgt tctgccagta gttgtggttc actgggtcga 1620 tgcttcgggc ccaggtagtc ttgcccgtgc gtgtaggccc aacgatgtag aggctccttg 1680 gtcttgaggt gcgtgacgca gcatccccct ggtgcattcg tccatccact tcagggactc 1740 tgcagcttgc tctacagatt gacagtgagg atgttcgagc atgtagatgt atgggtgtac 1800 ctgaaagatg ttctcgtcct tccaggatcg gatggtctcg tagcagtgca ggtcgggttc 1860 cgagggtgga tgaggtggca cgaaaggtga tggtagtgtt gggaagagac gctctgccga 1920 gtactcgaac tgttgtagtt tagtagccca ctcaaaaggg aaggccttct ggacttcgga 1980 taggtactcg gctttgttgg ttgtggtttc gataatgcca cgcattatct cgttacgctt 2040 tggaacaggg gtactcccgt aaccggctcc tgatgtaccg gctctgggaa tgaaagtacc 2100 tctggagtaa acggtgatcg gactcttgag gatgtactct ctagtcttat taggacttcg 2160 agaagcctgg atgttagggt ggtaaccctg aatgtcaaaa aaactaggat ccctagtaga 2220 cataggacgc atagtctgta gtaaaacatg aagatgtgga gtcccatcct ggtgagactc 2280 agaagaagca agaacgtagc taggagtcca atgacgtgcg acctcccaga gatgctgccc 2340 tgcctcgaac ggggtgagta ggcagcgggg gtaagtgagg aaggcatttg cagacttgaa 2400 ctggaagtta cgccttggtg gatctggtcc tacaggggtg ttctgctggt ggaggtcttc 2460 ctcctcggag gggtagtcag agccaggcat agggttgaag accccagcct gaacggaggg 2520 catatgcacg aagtggttgc cgaacgcact catgctctgg gacttggtcg cacaacgggg 2580 caaggagtct gagaagatac tcaccttctc aactctatcc cttacctgcg tttttgtttc 2640 cgcctcacag cttctcagca agcgtactta tagtacgcaa tgttgggcct tgagtccagg 2700 cgcggcccaa aaacgcgaaa aataatatta cgagcgtttt tagggcccgc gactgcgacg 2760 tccacatggc tctgtatgtg gacggagcgc actacaggta aagcgggagg gaatcccccg 2820 tgcaataatt tagactttcc tagtcattct ttattaaaga agaggttacc ccacagaacg 2880 tg 2882 //