Dbfetch
ID JQ621844; SV 1; circular; genomic DNA; STD; VRL; 2769 BP. XX AC JQ621844; XX DT 31-JUL-2012 (Rel. 113, Created) DT 12-OCT-2014 (Rel. 122, Last updated, Version 2) XX DE Sweet potato leaf curl Sao Paulo virus-[ZA:WP:2011] isolate PstI-012, DE complete genome. XX KW . XX OS Sweet potato leaf curl Sao Paulo virus-[ZA:WP:2011] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2769 RX DOI; 10.1007/s00705-012-1398-4. RX PUBMED; 22814698. RA Esterhuizen L.L., van Heerden S.W., Rey M.E., van Heerden H.; RT "Genetic identification of two sweet-potato-infecting begomoviruses in RT South Africa"; RL Arch. Virol. 157(11):2241-2245(2012). XX RN [2] RP 1-2769 RA Esterhuizen L.L., Van Heerden S.W., Rey C.M.E., Van Heerden H.; RT ; RL Submitted (03-FEB-2012) to the INSDC. RL Biochemistry, University of Johannesburg, Kingsway, Johannesburg, Gauteng RL 2006, South Africa XX DR MD5; 571ced477ad063d879446c493a6328ae. XX FH Key Location/Qualifiers FH FT source 1..2769 FT /organism="Sweet potato leaf curl Sao Paulo FT virus-[ZA:WP:2011]" FT /host="Ipomoea batatas" FT /strain="SPLCSPV-[ZA:WP:2011]" FT /isolate="PstI-012" FT /mol_type="genomic DNA" FT /country="South Africa:Waterpoort" FT /collected_by="L.L. Esterhuizen" FT /collection_date="2011" FT /identified_by="L.L. Esterhuizen" FT /db_xref="taxon:1560651" FT gene 172..444 FT /gene="V2" FT CDS 172..444 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:I7CDB4" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:I7CDB4" FT /protein_id="AFO66457.1" FT /translation="MSISAKYEPGTLGFELCSDLIRILRVRHYDRANARYAEISSVWGD FT TGKTETELRDRYRALHWECCPNCCPKLCPGFKKRTDEEKEGGSNP" FT gene 257..1021 FT /gene="v1" FT CDS 257..1021 FT /codon_start=1 FT /gene="v1" FT /product="coat protein" FT /db_xref="GOA:I7DDU8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I7DDU8" FT /protein_id="AFO66458.1" FT /translation="MTGRMRVTRRFHPYGGTPARRRLNFETAIVPYTGNAVPIAARSYV FT PVSRSVRMKRKKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGK FT RVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFVQAFTMYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFNGLYNHVTYNHKEEAKYENHLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1018..1455) FT /gene="C3" FT CDS complement(1018..1455) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /note="REn" FT /db_xref="GOA:I7DDU3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I7DDU3" FT /protein_id="AFO66453.1" FT /translation="MDSRTGESLSHAQITRAAEFFTNPMSVGQTAPFHLRLLYVHTNNI FT NTKKIMKFQLQVNHRNRREIGLQKIFLQFRIITTRLTGVIHSWTGILTRLKWRICNSLV FT SLGYFSLLNLVYVIRHLPQECLWVEEVDVIDCEDDIKLLLY" FT gene complement(1169..1618) FT /gene="C2" FT CDS complement(1169..1618) FT /codon_start=1 FT /gene="C2" FT /product="trans-activating protein" FT /note="TrAP" FT /db_xref="GOA:I7C3R8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I7C3R8" FT /protein_id="AFO66454.1" FT /translation="MSTPPSGYKRKCPQQEPIHEVAKKKQRKAPEPRTRIVWKGCGCSA FT FITNECKYQHGFTHRGITKSCTDYESSRILHQPHVCGSDCSVPPAVAVCTYKQHKHKED FT HEVPASSQPQEQEGNWIAKDISPVPNHNNASDWCYSQLDWYLDTP" FT gene complement(1527..2621) FT /gene="C1" FT CDS complement(1527..2621) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /note="Rep" FT /db_xref="GOA:I7DAC1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I7DAC1" FT /protein_id="AFO66455.1" FT /translation="MPRQPGFRVSAKNIFLTYPKCSLSKETALELLKAVNCPSDKLFIR FT VSQEEHQDGSLHLHALIQFKGKAQFKNPRHFDLQHPNSSNQFHPNFQGAKSSTDVKSYI FT EKDGDYIDWGTFQVDGRSARGGQQTANDAAAEALNADSAEAALQIIREKLPKDFIFQYH FT NLRNNLDRIFSPPPSVYCSPFSVSSFNNVPDIITDWAADNVMDAAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEAFKNWAVKNAVFCDVDTPF FT WIQEEVSPTGANSRGGQEEAEESS" FT gene complement(2207..2464) FT /gene="C4" FT CDS complement(2207..2464) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I7D0Y7" FT /protein_id="AFO66456.1" FT /translation="MGLCTSMLSSSSRVKPNLKTPDISTFNTPTAPTNSIQISRELNHQ FT QMSSPTSRRTVITSTGVLFRSTEDLLEEVSKQLMMRQQRP" XX SQ Sequence 2769 BP; 722 A; 574 C; 638 G; 835 T; 0 other; accggtgccc gcgttcgttt tatggtgggc cccacacggc atctttaatc attaaaaggc 60 gcgtcaatta cgagactttg tcgccaagta tggatttgtg ggatcctttg cagaacccat 120 tacctgagac tttatacggt ctacggtgta tggctcgagt ttttcagcaa gatgagtatt 180 tcggcgaaat acgagcctgg aaccctaggg ttcgagcttt gctccgattt aatccgcatt 240 ttgcgggttc gtcactatga cagggcgaat gcgcgttacg cggagatttc atccgtatgg 300 ggggacaccg gcaagacgga gactgaactt cgagaccgct atcgtgcctt acactgggaa 360 tgctgtccca attgctgccc gaagctatgt cccggtttca agaagcgtac ggatgaagag 420 aaagaagggg gatcgaatcc ctaaggggtg tgtgggtccc tgtaaggtac aggattacga 480 gtttaagatg gatgtcccgc atagtggtac gtttgtttgt gtctcagatt ttactcgtgg 540 tactgggctt acccaccgat taggtaagag ggtgtgtatt aagtccatgg gtattgacgg 600 taaggtctgg atggacgaca acgtcgccaa gagggaccat accaacatca ttacttactg 660 gttgattcga gataggaggc ccaataagga ccctctgacg tttgtacagg cctttactat 720 gtatgataac gaacccacta ctgctaagat ccgaatggat ctgagagata gaatgcaagt 780 gttgaagaag ttttctgtta ctgtatctgg tggcccttac aatcacaagg agcaggcttt 840 ggttaggaag ttttttaatg gattgtacaa tcatgttacc tataatcaca aggaagaagc 900 taagtacgaa aaccatttgg aaaatgcttt gatgttgtat tcagctagca gtcatgctag 960 taatcctgtg tatcagactc tgcgttgcag ggcttatttc tatgattcgc ataataatta 1020 ataaagaagt agttttatat catcttcgca atctattaca tccacttctt ctacccacaa 1080 acattcttgt ggtaaatgtc taattacata aactaaattc aacaatgaaa aataacctaa 1140 actaactaag ctattacaaa ttcgccattt aaggcgtgtc aagataccag tccaactgtg 1200 aataacacca gtcagacgcg ttgttatgat tcggaactgg agaaatatct tttgcaatcc 1260 aatttccctc ctgttcctgt ggttgacttg aagctggaac ttcatgatct tctttgtgtt 1320 tatgttgttt gtatgtacat acagcaaccg caggtggaac ggagcagtct gacccacaga 1380 catggggttg gtgaagaatt ctgctgctct cgtaatctgt gcatgactta gtgattcccc 1440 tgtgcgtgaa tccatgctgg tacttgcact cgttggttat gaaggctgag cagccgcaac 1500 ctttccacac tatcctggtc cttggttcag gagctttcct ctgcttcttc ttggccacct 1560 cgtgaattgg ctcctgttgg ggacacttcc tcttgtatcc agaagggggt gtcgacatca 1620 cagaaaactg cgttctttac cgcccagttt ttaaatgctt cttgctctgg cttgtccagc 1680 cagagtttaa atgaagatcc ttctcctgga ttgcagagga agatagtggg aattccacct 1740 ttaatttgaa ctggctttcc gtatttacaa ttactttgcc agtccttctg ggcccccata 1800 aattctttaa agtgctttag gtattggggg ttgacgtcat caatgacgtt ataccaagca 1860 ctgttgctat acacttttgg actcaagtcc aggtgtccac atagataatt atgtgggcct 1920 aaagacctag cccatactgt ttttcctatt ctacttgggc cttctataac aatactaatg 1980 ggcctatctg gccgcgcagc ggcatccatg acattatcag cggcccaatc ggtgataatg 2040 tcaggtacat tattgaaaga agaaacagaa aaaggagaac aataaaccga aggaggagga 2100 gaaaaaatcc tatctaaatt atttcgtaaa ttatggtatt gaaaaataaa atctttaggg 2160 agtttttccc taattatctg taatgctgct tcagcagaat ctgcgtttaa ggcctctgct 2220 gccgcatcat tagctgtttg ctgacctcct ctagcagatc ttccgtcgac ctgaaaagta 2280 ccccagtcga tgtaatcacc gtccttctcg atgtaggact tgacatctgt tgatgattta 2340 gctccctgga aatttggatg gaattggttg gagctgttgg ggtgttgaag gtcgaaatgt 2400 ctggggtttt taaattgggc tttacccttg aactggatga gagcatggag gtgcaaagac 2460 ccatcctgat gttcttcctg actaactctg ataaataatt tatcagacgg gcagtttact 2520 gcctttaata gctcaagagc tgtttcttta gaaagagagc atttgggata agtaaggaag 2580 atatttttag ctgacactct aaaacctggt tgacgaggca tattggtgtc cctcaaaact 2640 ctacggaatt ggtgtctttg gtgtctcatt tatacctgag acaccaatgg cattttggta 2700 attgatcacc tttaatttga attctgaaat cctattggtc ctccgtaaag cgggcaccgt 2760 attaatatt 2769 //