ID JQ621843; SV 1; circular; genomic DNA; STD; VRL; 2783 BP. XX AC JQ621843; XX DT 31-JUL-2012 (Rel. 113, Created) DT 12-OCT-2014 (Rel. 122, Last updated, Version 2) XX DE Sweet potato mosaic virus-[ZA:WP:2011] isolate PstI-01, complete genome. XX KW . XX OS Sweet potato mosaic virus-[ZA:WP:2011] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2783 RX DOI; 10.1007/s00705-012-1398-4. RX PUBMED; 22814698. RA Esterhuizen L.L., van Heerden S.W., Rey M.E., van Heerden H.; RT "Genetic identification of two sweet-potato-infecting begomoviruses in RT South Africa"; RL Arch. Virol. 157(11):2241-2245(2012). XX RN [2] RP 1-2783 RA Esterhuizen L.L., Van Heerden S.W., Rey C.M.E., Van Heerden H.; RT ; RL Submitted (03-FEB-2012) to the INSDC. RL Biochemistry, University of Johannesburg, Kingsway, Johannesburg, Gauteng RL 2006, South Africa XX DR MD5; 9d80fb39cf049f7d77ef4af5d2b13ce9. XX FH Key Location/Qualifiers FH FT source 1..2783 FT /organism="Sweet potato mosaic virus-[ZA:WP:2011]" FT /host="Ipomoea batatas" FT /strain="SPMaV-[ZA:WP:2011]" FT /isolate="PstI-01" FT /mol_type="genomic DNA" FT /country="South Africa:Waterpoort" FT /collected_by="L.L. Esterhuizen" FT /collection_date="2011" FT /identified_by="L.L. Esterhuizen" FT /db_xref="taxon:1560692" FT gene 92..445 FT /gene="V2" FT CDS 92..445 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:I7DDT8" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:I7DDT8" FT /protein_id="AFO66448.1" FT /translation="MDLWDPLQNPLPETLYGLRCMLSVKYLQSISKKYEPGTLGFELCS FT DLIRILRVRQYDRANARYAEISSVWGDSGKTEAELRDRYRALHWECCPNCCPKLCPDFK FT KRSDEEKEGGSNP" FT gene 258..1022 FT /gene="V1" FT CDS 258..1022 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:I7CDA4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:I7CDA4" FT /protein_id="AFO66447.1" FT /translation="MTGRMRVTRRFHPYGGTPARRRLNFETAIVPYTGNAVPIAARSYV FT PISRSVQMKRKKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGK FT RVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFVQVFTMYDNEPTTA FT KIRMDLRDRMQVLKKFSVNVSGGPYNHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1019..1456) FT /gene="C3" FT CDS complement(1019..1456) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /note="REn" FT /db_xref="GOA:I7C3R4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I7C3R4" FT /protein_id="AFO66449.1" FT /translation="MDLRTGESLSHAQITRAAELFNNPMSAGQTAPFHLRLMYVHSNNL FT NTRKIMKFQLQVNHRNRREIGFQKIFLQFRIITTRLTGVIHSWTGILTRLKWRICNSLV FT SLGYFSLLNLVYVIRNLPSSCLWVEEVDVIDCKDDIKLLLY" FT gene complement(1170..1619) FT /gene="C2" FT CDS complement(1170..1619) FT /codon_start=1 FT /gene="C2" FT /product="trans-activating protein" FT /note="TrAP" FT /db_xref="UniProtKB/TrEMBL:I7DAB6" FT /protein_id="AFO66450.1" FT /translation="MSTAPSGYKRKCPLQEPIHAAAKKKQRKTPEPRTRIVWKGCGCSA FT FITNDCKFQHGFTHRGVTKSCTDYESCRTLQQPHVCGSDCPIPSTVDVCPFKQPKHKED FT HEVPASSQPQEQEGNWIPEDLPPVPNHNNASDWCYSQLDWYFNTP" FT gene complement(1528..2622) FT /gene="C1" FT CDS complement(1528..2622) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /note="Rep" FT /db_xref="GOA:I7D0Y3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I7D0Y3" FT /protein_id="AFO66451.1" FT /translation="MAPPKRFKIQAKNYFLTYPHCSLSKEEVLAQLQKFQTPVNKKYIH FT IARELHEDGQPHIHVLLQFEGKFVCTNQRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYV FT DKDGDTLTWGEFQIDGRSARGGQQTANDAAAEALNSGSKEAALQIIREKLPEKFIFQYH FT NLCSNLDRIFSPPPSVYSSPFSLSSFNNVPDIISDWAAENVMDSAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEALKNWAIKNAIFCDVDSPF FT WIQEEVSTSGANTRSGQEEAEEDS" FT gene complement(2175..2465) FT /gene="C4" FT CDS complement(2175..2465) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I7CDA9" FT /protein_id="AFO66452.1" FT /translation="MGSLISTCFSSSKASSSARTNAYSTWSLQPGQHISIQTYRELNPA FT PMSSPTSIRMEIPSLGANFKSTEDLLEEASKRLMTQQQRHLIPAAKKLPYK" XX SQ Sequence 2783 BP; 724 A; 571 C; 658 G; 830 T; 0 other; accggtgccc gcgccccact ctttattgtg ggacccactc gttactttaa tcatttaaag 60 caattccgtg ttgcagtctt ggtcgccaag tatggatttg tgggaccctt tgcagaatcc 120 actcccggag actttatacg gtctccggtg tatgctttct gttaaatact tgcagagtat 180 ttcgaagaaa tacgagccag gaaccctagg gttcgagttg tgctccgatt taatccgcat 240 tctgcgggtt cgtcagtatg acagggcgaa tgcgcgttac gcggagattt catccgtatg 300 gggggactcc ggcaagacgg aggctgaact tcgagaccgc tatcgtgcct tacactggga 360 atgctgtccc aattgctgcc cgaagctatg tcccgatttc aagaagcgtt cagatgaaga 420 gaaagaaggg ggatcgaatc cctaagggat gtgtgggtcc ttgtaaggtc caggattacg 480 agtttaagat ggatgtccca catagtggga cctttgtgtg tgtgtctgat tttactagag 540 gtactgggct tacccatcgt ctgggtaagc gtgtgtgtat taagtccatg ggtattgacg 600 gtaaggtctg gatggatgac aacgtcgcta agagggatca cactaacatc attacttact 660 ggttgatccg agatagaagg cccaataagg accccctgac ttttgtacag gtgttcacca 720 tgtatgataa tgagcccacc actgctaaga tccgaatgga tctgagagat agaatgcagg 780 ttttgaagaa gttttctgtg aatgtatctg gtgggcctta caaccacaag gagcaggctc 840 tggttaggaa gttttttaag ggattgtata atcatgttac ttacaaccac aaggaagaag 900 ctaagtacga gaaccatttg gaaaatgctt tgatgttgta ttctgctagc agtcatgcta 960 gcaatcctgt ataccagact ctgcgttgca gggcttattt ttatgattcg cataataatt 1020 aataaagaag tagttttata tcatctttgc aatctattac atcaacttct tctacccata 1080 aacatgatga tgggagattt ctaattacat aaactaaatt taataatgaa aaataaccta 1140 aactaactaa gctattacat atgcgccatt taaggcgtgt taaaatacca gtccaactgt 1200 gaataacacc agtcagacgc gttgttatga ttcggaactg gaggaagatc ttctggaatc 1260 caatttccct cctgttcctg tggttgactt gaagctggaa cttcatgatc ttccttgtgt 1320 ttaggttgtt tgaatggaca tacatcaacc gtagatggaa tggggcagtc tgacccgcag 1380 acatggggtt gttgaagagt tctgcagctc tcgtaatctg tgcatgactt agtgactccc 1440 ctgtgcgtaa atccatgctg gaacttgcag tcgttggtga tgaatgctga gcagccgcag 1500 cccttccaca ctatccttgt cctaggctca ggagtcttcc tctgcttctt cttggccgct 1560 gcgtgtattg gctcctgaag tggacacttc ctcttgtatc cagaaggggc tgtcgacatc 1620 acagaaaatt gcgttcttta tagcccagtt cttgagtgct tcttgctctg gcttgtccag 1680 ccagagttta aatgaagacc cctctcctgg attgcagaga aagatagtgg gaattccacc 1740 tttaatttga actggctttc cgtatttaca gttgctttgc cagtccttct gggcccccat 1800 aaattcttta aagtgcttta ggtattgggg gttgacgtca tcaatgacgt tataccaagc 1860 actgttgcta tacacttttg gactcaagtc caggtgtcca cacaaataat tatgaggacc 1920 taatgaccga gcccatactg tttttcctat tctacttggg ccttctataa ctatacttat 1980 gggcctatcc ggccgcgcag cggaatccat gacattttca gcggcccaat cgctgataat 2040 gtcaggtaca ttattgaaag atgaaagaga aaaaggagaa gaatacacag aaggaggagg 2100 agagaaaatc ctatctaaat tagaacataa attatgatat tgaaaaataa atttttcagg 2160 gagtttctcc ctgattattt gtaaggcagc ttctttgctg ccggaattaa gtgcctctgc 2220 tgctgcgtca ttagccgttt gctggcctcc tctagcagat cttccgtcga tttgaaattc 2280 gccccaagtg agggtatctc catccttatc gacgtaggac ttgacatcgg agctggattt 2340 agctccctgt atgtttggat ggaaatgtgc tgacctggtt ggagagacca ggtcgaatag 2400 gcgttggttc gtgcagacga acttgccttc gaactggaga agcacgtgga tatgaggctg 2460 cccatcttcg tgcagttctc tagctatgtg aatatatttt ttattcacag gtgtttgaaa 2520 tttttggagt tgggcgagaa cttcttcttt agagagagag caatgcggat aagtaaggaa 2580 gtaattttta gcttgtattt taaatcgttt aggaggagcc attgacttgg tcaaattgga 2640 gacacccaaa cttgctgaat gaattggata tcggagtaca atatataccc tgtctccaaa 2700 tggcattatg gtaattacaa caactttaat ttgaattctg aaatctcatt ggtccgccat 2760 aaagcgggca ccgtattaat att 2783 //