Dbfetch
ID JQ425075; SV 1; circular; genomic DNA; STD; VRL; 2630 BP. XX AC JQ425075; XX DT 03-MAY-2012 (Rel. 112, Created) DT 03-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato yellow leaf distortion virus isolate Ad segment DNA-A, complete DE sequence. XX KW . XX OS Tomato yellow leaf distortion virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2630 RA Fiallo-OLive E., Hernandez-Zepeda C., Trejo D., Carrillo-Trip J., RA Rivera-Bustamante R., Martinez Y.; RT "Complete genome and pathogenicity of tomato yellow leaf distortion virus, RT a bipartite begomovirus infecting tomato in Cuba"; RL Unpublished. XX RN [2] RP 1-2630 RA Fiallo-Olive E.; RT ; RL Submitted (19-JAN-2012) to the INSDC. RL Proteccion de Plantas, Centro Nacional de Sanidad Agropecuaria, Carretera RL de Tapaste y Autopista Nacional, San Jose de las Lajas, Mayabeque 32700, RL Cuba XX DR MD5; 3ed3b81662ee491eef94012266a7da72. XX FH Key Location/Qualifiers FH FT source 1..2630 FT /organism="Tomato yellow leaf distortion virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="Ad" FT /mol_type="genomic DNA" FT /country="Cuba" FT /collection_date="Jan-2007" FT /db_xref="taxon:649996" FT CDS 204..959 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B6DX37" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B6DX37" FT /protein_id="AFI57869.1" FT /translation="MPKRDLPWRSIAGTSKVSRNANYSPRGGMGPKFNKAQAWVDRPMF FT KKPRIYRTLTSPDVPRGCEGPCKIQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILVKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVLHKFYSKVTGGQYASNEQALVKRFWKVNTRVVYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT CDS complement(956..1354) FT /codon_start=1 FT /product="replication enhancement protein" FT /db_xref="GOA:B6DX38" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B6DX38" FT /protein_id="AFI57870.1" FT /translation="MDSRTGELITARQAENGVYTWEIENPLYFKMYRVEDPLYTRTRVY FT HIQIRFNHNLRRALHLHKAYLNFQVWTTSMKASGSTYLIRFRHLVNMYLDQLGVICINN FT VIRAVRFATDRSYVSHVLENHSIKFKFY" FT CDS complement(1101..1490) FT /codon_start=1 FT /product="transactivator protein" FT /db_xref="GOA:B6DX39" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B6DX39" FT /protein_id="AFI57871.1" FT /translation="MRSSSPSHPPSIKKAHRQAKKRAIRRRRIDLECGCSIYFHIGCTG FT HGFTHRGTHHCTSGGEWRVYLGDRKSPVFQDVQGRGSVVHQDKGLPYPDTVQPQPEESV FT ASPQSLPELPSLDDIDESFWVNLFN" FT CDS complement(1402..2487) FT /codon_start=1 FT /product="replication associated protein" FT /db_xref="GOA:B6DX40" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6DX40" FT /protein_id="AFI57872.1" FT /translation="MPSVKRFKVSAKNYFLTYPQCSLTKEEALSQLQNLETPVNKKFIK FT ICRELHENGEPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGKQSANDSYAKALNADSVQSAMAVLREEQPKDFVLQNH FT NIRSNLERIFKKAPEPWVPPFQLSSFTNVPDEMQEWADDYFGRGSAARPQRPLSIIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNGRVFSNEVEYNVIDDVAPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKAFLDKEENASLRNWTVKNAIFITLT FT SALYQEGTQAGQEEGDQEEAD" FT CDS complement(2073..2336) FT /codon_start=1 FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B6DX41" FT /protein_id="AFI57873.1" FT /translation="MRMGSLISMCSYSSKENTNARITDSSIWSPQPGQHISIRTYRELN FT PAPTSSPTSTRTEIHWNGENSRSTADLLEEASSLLMIHMPRR" XX SQ Sequence 2630 BP; 623 A; 624 C; 625 G; 758 T; 0 other; accggatggc cgcgctttgg ggtacccccc cccgcgcgct ctcattggtg ccgtactctc 60 tcacgcgcgc cgcttttcat tactcgtgtc atcggccaat catattgcgc ctgccgcgcc 120 tgtttatttc aaactacttg ggcccgaagt tgttgactgg tctataaatg aaaagcttat 180 tgggcctgtg tctttaactc aaaatgccta agcgcgatct tccatggcgc tcgatcgcgg 240 gaacgtcaaa ggtgagccgc aatgcgaatt actcaccacg tggcggtatg ggcccaaaat 300 tcaacaaggc ccaggcttgg gttgatcggc ctatgttcaa gaagcccagg atatatcgga 360 ctttgaccag tccagatgtg ccacgaggct gtgaagggcc ttgtaagatc cagtcgtttg 420 agcaaaggca tgacatctct catgtcggta aggtcatgtg tatatccgat gtcacacgtg 480 gcaatggcat tacccaccgt gtgggtaagc gtttctgtgt taagtctgtg tatattttag 540 ttaaggtatg gatggatgag aacatcaagc tcaagaatca cacgaacagt gtgatgttct 600 ggttggtccg agaccgtcga ccgtatggta cgcctatgga tttcggtcag gtgttcaaca 660 tgttcgacaa cgagcctagt acagccacgg ttaagaacga tctgcgtgat cgtttccagg 720 tattgcacaa gttctactcg aaggtgacag gtggacagta tgccagtaat gaacaggcgc 780 tggtcaagcg tttctggaag gtcaatactc gtgtcgtcta caaccaccag gaagccgcta 840 agtacgagaa tcatacggag aacgccctgt tattgtacat ggcatgtact catgcctcta 900 accccgtgta tgcaaccttg aagattcgga tctattttta cgattcgatc atgaattaat 960 aaaatttaaa ttttattgaa tgattttcca gtacatgact cacatacgat ctgtctgtcg 1020 cgaatcgaac agctctgatt acattgttta tgcaaatcac gcctaactga tctaagtaca 1080 tgttaactaa atgtctaaac ctaattaaat aagttgaccc agaagctttc atcgatgtcg 1140 tccagacttg gaagttcagg taagctttgt ggagatgcaa cgctctcctc aggttgtggt 1200 tgaaccgtat ctggatatgg tagacccttg tcctggtgta caacggatcc tctaccctgt 1260 acatcttgaa atacagggga ttttctatct cccaggtata cacgccattc tccgcctgac 1320 gtgcagtgat gagttccccg gtgcgtgaat ccatgtcccg tgcagcctat gtggaagtag 1380 atggagcaac cgcactccag atcaatccgc ctcctcctga tcgccctctt cttggcctgc 1440 ctgtgtgcct tcttgataga gggcggatgt gagggtgatg aagatcgcat tcttgacagt 1500 ccagttcctg agagatgcgt tttcctcttt gtccaggaaa gctttatagc tagcaccctc 1560 accaggattg caaagcacga ttgatgggat tccaccttta atttgaactg gcttgccgta 1620 tttgcaattt gactgccagt ctttttgggc cccgatcaat tctttccagt gctttagctt 1680 tagatagtgc ggtgcgacgt catcaatgac gttatactcc acttcattcg aaaagactcg 1740 accattgaag tccaggtgtc cacttagata attatgtggg cctaacgcac gagcccacat 1800 ggtcttccct gtccttgaat caccttctac gatgatactc aatggtctct gtggccgcgc 1860 agcggaacct cttccaaaat aatcatccgc ccactcctgc atctcatcgg gaacgttagt 1920 gaaggacgag agttgaaacg gaggaaccca cggttccgga gcctttttga atatcctctc 1980 tagattggag cggatgttat gattctgcaa gacgaaatct tttggctgtt cttcccttaa 2040 aaccgccatg gcagattgaa cagaatctgc atttaacgcc ttggcatatg aatcattagc 2100 agactgcttg cctcctctag cagatctgcc gtcgatctgg aattctcccc attccagtgt 2160 atctccgtcc ttgtcgatgt aggacttgac gtcggagctg gatttagctc cctgtatgtt 2220 cggatggaaa tgtgctgacc tggttgggga gaccagatcg aagaatctgt tattcttgca 2280 ttggtatttt ccttcgaact gtatgagcac atggagatga ggctccccat tctcatgaag 2340 ctctctgcag attttgatga acttcttgtt aactggtgtt tcaaggtttt gtaattggga 2400 aagtgcctct tcttttgtca gagagcactg tggataagtg aggaaatagt ttttggctga 2460 gactttgaaa cgcttaaccg atggcatttt tgtaataaga ggggtgtacc ccgattgagc 2520 tctctcaaaa cttgctctat gaattggggt ctggggtctc atttatacta gaaggctcta 2580 tagaactctc aatctcgttc gcacacgtgg cggccatccg ctataatatt 2630 //