ID JQ420905; SV 1; linear; genomic RNA; STD; VRL; 5883 BP. XX AC JQ420905; XX DT 10-MAY-2012 (Rel. 112, Created) DT 10-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Potato leafroll virus isolate SMI-5, partial genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5883 RA Jeevalatha A., Chakrabarti S.K., Singh B.P.; RT "Genome sequence of Potato leafroll virus isolates from India"; RL Unpublished. XX RN [2] RP 1-5883 RA Jeevalatha A., Chakrabarti S.K., Singh B.P.; RT ; RL Submitted (13-JAN-2012) to the INSDC. RL Division of Plant Protection, Central Potato Research Institute, Bemloe, RL Shimla, Himachal Pradesh 171001, India XX DR MD5; d95164743a5f0a1a530551681ad3adf6. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5883 FT /organism="Potato leafroll virus" FT /host="potato" FT /isolate="SMI-5" FT /mol_type="genomic RNA" FT /country="India:Shillang, Meghalaya" FT /collection_date="May-2011" FT /db_xref="taxon:12045" FT 5'UTR <1..70 FT CDS 71..814 FT /codon_start=1 FT /product="P0" FT /note="ORF 0" FT /db_xref="GOA:Q84835" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q84835" FT /protein_id="AFJ11891.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACKVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 204..2123 FT /codon_start=1 FT /product="P1" FT /note="ORF 1; proteinase; polyprotein" FT /db_xref="GOA:I1Z1B4" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:I1Z1B4" FT /protein_id="AFJ11892.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQPPPLLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS FT EMLFASWNSVKEVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNEKAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCPEGAFATSLKTGNRIPMSTFFPIFK FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSENLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDVATGAPPMDKM FT VEQIIIAMVGRINLSEIEEKIVSKVSQKALQKPKQKKRGRRGGKNKQYSSPPTSTQSTS FT GAPKKEAAPQASGSAGTSRVTTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKV" FT CDS 1528..1668 FT /codon_start=1 FT /product="replication-associated protein 1" FT /note="Rap1" FT /db_xref="UniProtKB/TrEMBL:B0FEU0" FT /protein_id="AFJ11893.1" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQTQQRRLLHQLQQRKLLQQTS FT L" FT CDS <1541..3391 FT /codon_start=1 FT /product="P2" FT /note="ORF 2; putative RNA polymerase; translated by FT ribosomal frameshift" FT /db_xref="GOA:I1Z1B6" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I1Z1B6" FT /protein_id="AFJ11894.1" FT /translation="GLRFGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYRRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAKA FT QAKEARKAWREEQAIQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTVEFLECLQKVS FT GALSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3589..5742 FT /codon_start=1 FT /transl_except=(pos:4213..4215,aa:OTHER) FT /product="P5" FT /note="ORF 5; readthrough protein; translated by amber stop FT codon suppression" FT /db_xref="GOA:I1Z1B7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1Z1B7" FT /protein_id="AFJ11895.1" FT /translation="MSTVVVKGNVNGGIQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVAMQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS FT PREPEGKPVGNKPRDETLIQTQERQPDQTPSDDVSDAGSVNSGGSTESLRLEFGINSDS FT TYDATVDGTDWPRIPPPRHPPEPRVSGDSRTVTDFSPNADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLSKAVSPAIAKLRSIRKSQPLEGG FT TLKKGSTDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPPAAIQW FT LYEYQPPPQVDRNIAEKPFQGRK" FT CDS 3589..4215 FT /codon_start=1 FT /product="P3" FT /note="ORF 3; major capsid protein" FT /db_xref="GOA:I1Z1B8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:I1Z1B8" FT /protein_id="AFJ11896.1" FT /translation="MSTVVVKGNVNGGIQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVAMQNPK" FT CDS 3614..4084 FT /codon_start=1 FT /product="P4" FT /note="ORF 4; putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q77E88" FT /protein_id="AFJ11897.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT CDS 5147..5335 FT /codon_start=1 FT /product="P6" FT /note="ORF 6" FT /db_xref="UniProtKB/TrEMBL:I1Z1C0" FT /protein_id="AFJ11898.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLLTFLRMPIYWRIGMP FT NTSTLVIPKKTSLLLLL" FT CDS 5365..5742 FT /codon_start=1 FT /product="P7" FT /db_xref="GOA:I1Z1C1" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1Z1C1" FT /protein_id="AFJ11899.1" FT /translation="MLEKREENVKNKTSSWKPPLSKAVSPAIAKLRSIRKSQPLEGGTL FT KKGSTDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPPAAIQWLY FT EYQPPPQVDRNIAEKPFQGRK" XX SQ Sequence 5883 BP; 1637 A; 1488 C; 1431 G; 1327 T; 0 other; acaaaagaat accaggggaa attgcagctt tagcgcataa accctacact cattgcaaac 60 gttatagcat atgattgtat tgactcagtc tggaaccttg ctttttgacc aaagatttaa 120 actttcaaag tttctcttcg ttgtcattgc aacaggcttt cctcttctcc tgcagcaagc 180 gagcttaatt tacggctaca atcatgaaca gatttaccgc atatgccgct cttttcttta 240 tgttctccct ttgctcaact gcaaaagagg caggatttca acatccggcc ttcaacttcc 300 gaggcacctc cactatgagt gccttgagtg gggattactc tgcggcaccc accccgctat 360 acaaatcgtg ggccctacca tcgtcattaa acttgacgac ccaaccaccg ccgctgctta 420 cagatcggag ctactacgag ttagttcaag ctcttatatc caaaatgcgg ctggattgtc 480 aaacggttgg ggacatgaca tggaggcatt tgtcagaaat gctatttgcc tcctggaact 540 ccgtgaaaga agtatccctc aaagcggcct ccgtgacctt atgggcaatt atcagcattt 600 ggttcggtct ttattggacg cttgcaaggt tgatcacttt gttcctctgg actttcagca 660 tagaagcctt atgcttaatt ttgctcggtt gtataaccag cttgatctac aagggcgcgc 720 taagtctttc agagcactta ccggttttcc tgtttatgtc ccctctgaag attatttgga 780 gggcagcttt ctccaaaagg aattacaaga atgagaaggc tgtggaagga tacaaagggt 840 tttcggtccc acagaaaccg ccaaagtctg ccgtaattga actacaacat gaaaacggca 900 gccatctcgg gtacgcgaac tgcattcgct tgtacagtgg agagaacgcc ttggtgacag 960 ctgaacactg tccagaaggc gctttcgcaa cgtcgttgaa aactggaaac aggattccga 1020 tgtcgacttt ctttcccatt ttcaaaagtg cccgtaatga tatctccata ctagtaggtc 1080 cacccaactg ggaaggtcta ctatcagtca aaggagctca tttcattaca gccgacaaaa 1140 tcggcaaagg tcctgcctct ttctacactc ttgagaaagg ggagtggatg tgccatagtg 1200 ccaccataga tggagcccat caccagttcg tgtctgtttt atgcaacact ggacccggat 1260 attccggaac agggttttgg tcttcagaga atctgcttgg tgtgcttaag ggcttcccac 1320 tggaagagga gtgtaactat aatgttatgt ctgttatacc ctcgatccca ggaatcactt 1380 ccccaaatta tgtgtttgag tcgaccgccg taaaaggccg cgtcttctca gatgaagctg 1440 tgaaagagct ggagcgggaa gcatccgaag ccgtcaagaa gcttgccaga tttaaatcac 1500 ttaccggcaa gaactgggct gatgattatg actccgatga ggattacggt ttggagagag 1560 aggctgcaac aaatgcgccc gcagagaaaa ctgctcaaac aaactcagca gagaagactg 1620 ctccatcaac ttcagcagag aaaactgctc caacaaacaa gcctttaaat gggcaagcgg 1680 caccgtccgc caaaacaaac ggcaactccg acatccccga cgtcgctaca ggcgcaccac 1740 caatggacaa aatggtcgaa cagatcatca tagctatggt ggggagaatc aatctctcgg 1800 agatagagga gaagatagtg agcaaggtgt ctcagaaagc cctgcaaaag cccaagcaaa 1860 agaagcgcgg aaggcgtgga gggaagaaca agcaatacag ttcacctcct acttcaacgc 1920 aatctacaag tggggcgccc aagaaggagg ctgcccccca ggcttcagga agtgcgggca 1980 catcccgcgt tactaccacc cccgcaccag aggcgaaacc cagtgggggc aaaaactctg 2040 ccaagttcat cccgagctgg cggagaaaac agcaggattc ggctggccaa aagccggatc 2100 tgaagctgaa ctccaaagtc tgaatctaca ggctgccagg tggctccaac gcgcggagtc 2160 ggccactatc cctggcgcag aagcaagaaa gcgcgtgatt gagaaaacag tggaggcata 2220 tagaaattgt gtaactaacg ccccactgtg ctcccttaaa tccaaactgg attgggctgg 2280 ctttcaacaa gatatccgtg aagcagtcca atcccttgag ctagacgctg gtgtaggcat 2340 cccctatatc gcgtatggcc tccccacaca ccgaggatgg gttgaggacc ataagcttct 2400 cccagtgctc actcagctga cctttgaccg cttacagaag atgtcagagg ccagctttga 2460 ggatatgagc gcagaagagc tggttcaaga agggctctgt gatcctatca gattatttgt 2520 caaaggagag ccccacaaac agagtaaact cgatgaaggc cgctaccgcc tcatcatgtc 2580 tgtttccttg gtggatcaac tggtagcccg ggttttgttc caaaatcaga acaaaaggga 2640 aatttccctg tggaggtctg tgccttccaa acccggtttc ggcctttcaa ctgacactca 2700 aactgttgaa ttcttggagt gtcttcaaaa ggtgtctgga gcgctatctg tggaagaatt 2760 gtgtgcaaat cacaaggagt acacgcgccc aaccgactgt tccggtttcg actggtcagt 2820 cgcgtattgg atgctggagg atgatatgga ggtgagaaat cgcctgacat ttaataacac 2880 ccagctcacc aagcgccttc gggctgcctg gttgaagtgc ataggaaact ccgtcctatg 2940 cctgtccgat ggcactttac ttgcccaaac tgttcccggt gtgcaaaaga gcggaagtta 3000 caatacaagt tcctccaact ctagaatccg ggttatggct gcctatcatt gtggcgccga 3060 ctgggcaatg gccatggggg acgatgctct cgaagccccc aactccgacc tagaggagta 3120 taaaacacta ggtttcaaag tcgaggtagg tcgagaactc gaattctgtt cacacatctt 3180 cagaaatccg accctcgccg ttccggtcaa caccaacaaa atgctttaca agttgatcca 3240 tggttataat ccggaatgtg gcaatccaga agtgattcaa aactatctgg ctgcagtatt 3300 ctctgtgctg caggaactcc gacacgatcg tgagctcgtt gccaagctcc accagtggtt 3360 ggttccgagt gccaccacaa aagaacactg aaggagctca ctacaactag ccaagcatac 3420 gcgagttgca agcattggaa gttcaagcct cgttacatca accggacaaa atagattata 3480 aattcttagc gggatttgct ttaggattct catccgcaat cccattttca gtagccggtt 3540 tatattttgt ttacctaaag atttcctccc acgtgcgatc aatcgttaat gagtacggtc 3600 gtggttaaag gaaatgtcaa tggtggtata caacaaccaa gaaggcgaag aaggcaatcc 3660 cttcgcaggc gcgctaacag agttcagcca gtggttatgg tcacggcccc tgggcaaccc 3720 aggcgccgaa gacgcagaag aggaggcaat cgccgctcaa gaagaactgg agttccccga 3780 ggacgaggct caagcgagac attcgtgttt acaaaggaca acctcatggg caactcccaa 3840 ggaagtttca ccttcgggcc gagtctatca gactgtccgg cattcaagga tggaatactc 3900 aaggcctacc atgagtataa gatcacaagc atcttacttc agttcgtcag cgaggcctct 3960 tccacctcct ccggttccat cgcttatgag ttggaccccc attgcaaagt atcatccctc 4020 cagtcctacg tcaacaagtt ccaaattacg aagggcggcg ccaaaactta tcaagcgcgg 4080 atgataaacg gggtagaatg gcacgattcc tctgaggatc agtgccggat actgtggaag 4140 ggaaatggaa aatcttcaga taccgcagga tccttcagag tcaccatcag ggtggctatg 4200 caaaacccca aataggtaga ctccggatca gagcctggtc caagcccaca accaacaccc 4260 actccaactc cccagaagca cgagcgattc attgcttacg ttggcatacc tatgctaacc 4320 attcaggcta gggagaacga cgaccaaatc atattgggtt ccttagggag ccaaaggatg 4380 aaatatatag aggacgagaa ccagaactat acaaatgtta gttctgagta ttactctcaa 4440 tcgagcatgc aagccgtccc tatgtattac ttcaatgtcc cgaaagggca atggtcagtc 4500 gatatcagtt gcgaagggta tcaacccact agcagcacct cggatccaaa ccggggtagg 4560 agtgacggga tgatcgcgta ttcaaacgcg gattccgatt attggaatgt tggtgaagcg 4620 gatggtgtca aaatttcgaa gctacgcaac gataacacct accgccaagg tcacccagaa 4680 cttgaaatca actcgtgtca ttttcgcgag ggccaactcc ttgaacggga cgctacaatt 4740 agcttccacg ttgaagcgcc tactgatggg cgattctttc tcgttggtcc cgctatccag 4800 aaaaccgcaa agtataacta tactatctca tacggtgact ggacagaccg agacatggaa 4860 ctggggctga tcaccgtggt gcttgatgag catttagaag gcactggttc ggctaacaga 4920 gtgcggcggc ccccacggga gggccacacc tatatggcct cgccgcgcga accggaagga 4980 aaaccggttg gaaacaaacc aagggacgaa accctgatac aaacgcagga aagacaacct 5040 gatcaaactc cgtctgacga cgtatccgat gctggttcgg taaacagcgg cggctcaact 5100 gagtcgctgc gattggagtt cgggataaac tcagatagta cctacgatgc tacagtcgat 5160 ggtacagact ggcccagaat tcctccacca aggcacccac ctgaacctag agtttccggc 5220 gattcaagaa ctgttactga cttttctccg aatgccgatc tattggagaa ttgggatgcc 5280 gaacacttcg accctggtta ttccaaagaa gacgtcgctg ctgctactat tatagcgcac 5340 ggcagtattc aagatgggcg aagtatgttg gagaagagag aggaaaatgt caagaacaaa 5400 acctcctcct ggaagccccc gttatctaaa gcggtgagcc cagccatagc caaattgcgc 5460 tcgattcgca aatcccaacc cctcgaggga gggaccctta agaaaggctc caccgatggt 5520 gtctcatcca ttggcagtgg ttctctaaca ggtggcacgc ttaagaggaa ggtaactatt 5580 gaagagcgtc tactgcagac cttaacaact gaacaaaggc tgtggtacga gaatctgaag 5640 aaaactaacc ctccagctgc tatccaatgg ctgtatgaat atcagccacc tccccaagta 5700 gatagaaata tagctgaaaa gccattccaa gggaggaaat gagtcgactc acgacttaaa 5760 actgagtgtc cgccggacat taagcggaac gaaagccgaa aggtgattag gctctcaacg 5820 cctgctagag accgtcgaaa gacgcgactg tgtagccagg atcctcttac agggttgtgt 5880 agt 5883 //