ID JQ420904; SV 1; linear; genomic RNA; STD; VRL; 5883 BP. XX AC JQ420904; XX DT 10-MAY-2012 (Rel. 112, Created) DT 10-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Potato leafroll virus isolate OTNI-2, partial genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5883 RA Jeevalatha A., Chakrabarti S.K., Singh B.P.; RT "Genome sequence of Potato leafroll virus isolates from India"; RL Unpublished. XX RN [2] RP 1-5883 RA Jeevalatha A., Chakrabarti S.K., Singh B.P.; RT ; RL Submitted (13-JAN-2012) to the INSDC. RL Division of Plant Protection, Central Potato Research Institute, Bemloe, RL Shimla, Himachal Pradesh 171001, India XX DR MD5; a8dc0a3a1922be0ecf76a3aa3f0c8a72. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5883 FT /organism="Potato leafroll virus" FT /host="potato" FT /isolate="OTNI-2" FT /mol_type="genomic RNA" FT /country="India:Ooty, Tamil Nadu" FT /collection_date="Jul-2011" FT /db_xref="taxon:12045" FT 5'UTR <1..70 FT CDS 71..814 FT /codon_start=1 FT /product="P0" FT /note="ORF 0" FT /db_xref="GOA:I1Z1A6" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:I1Z1A6" FT /protein_id="AFJ11884.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGFSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACEVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 204..2123 FT /codon_start=1 FT /product="P1" FT /note="ORF 1; proteinase; polyprotein" FT /db_xref="GOA:I1Z1A7" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:I1Z1A7" FT /protein_id="AFJ11885.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQPPPPLTDRSYYELVQALISKMRLDFQTVGDMTWRHLS FT EMLFASWNSVREVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKIGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKTKQNSSPPTSTQSTS FT GAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT CDS 1528..1668 FT /codon_start=1 FT /product="replication-associated protein 1" FT /note="Rap1" FT /db_xref="UniProtKB/TrEMBL:B0FEU0" FT /protein_id="AFJ11886.1" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQTQQRRLLHQLQQRKLLQQTS FT L" FT CDS <1541..3391 FT /codon_start=1 FT /product="P2" FT /note="ORF 2; putative RNA polymerase; translated by FT ribosomal frameshift" FT /db_xref="GOA:I1Z1A9" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I1Z1A9" FT /protein_id="AFJ11887.1" FT /translation="GLRFGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREDQAKQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAHHSGADWAMAMGDDAL FT EAPNSDLEEYKSLGFNVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVVKLHQWLVPSATTKEH" FT misc_feature 3589..5742 FT /note="similar to P5; ORF 5; readthrough protein; FT translated by amber stop codon suppression" FT CDS 3589..4215 FT /codon_start=1 FT /product="P3" FT /note="ORF 3; major capsid protein" FT /db_xref="GOA:Q84838" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q84838" FT /protein_id="AFJ11888.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3614..4084 FT /codon_start=1 FT /product="P4" FT /note="ORF 4; putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q8QYQ5" FT /protein_id="AFJ11889.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDVEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPAPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT CDS 5147..5335 FT /codon_start=1 FT /product="P6" FT /note="ORF 6" FT /db_xref="UniProtKB/TrEMBL:I1Z1B2" FT /protein_id="AFJ11890.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP FT NTSTLVIPKRMSPLLLL" FT misc_feature 5365..5742 FT /note="similar to P7; ORF 7" XX SQ Sequence 5883 BP; 1632 A; 1490 C; 1437 G; 1324 T; 0 other; acaaaagaat accaggggaa attgcagctt tagcgcataa actctacact cattgcaaac 60 gttatagcat atgattgtat tgacccagtc tggaacattg ctttttgacc aaagatttaa 120 gctctcaaag tttctcttcg ttgtcattgc aacaggcttt cctcttctcc tgcagcaagc 180 gagcttaatt tacggctata atcatgaaca gatttaccgc atatgccgct cttttcttta 240 tgttctccct ttgctcaact gcaaaagagg caggatttca acatccggcc ttcaacttcc 300 gaggcacctc cactatgagt gccttgagtg gggattactc tgcggcaccc accccgctat 360 acaaatcgtg ggccctacca tcgtcattaa acttgacgac ccaaccaccg ccgccgctta 420 cagatcggag ctactacgag ttagttcaag ctcttatatc caaaatgcgg ctggattttc 480 aaacggttgg ggacatgaca tggaggcatt tgtcagaaat gctatttgcc tcctggaact 540 ccgtgagaga agtatccctc aaagcggcct ccgtgacctt atgggcaatt atcagcattt 600 ggttcggtct ctattggacg cttgcgaggt tgatcacttt gttcctctgg actttcagca 660 tagaagcctt atgcttaatt ttgctcggtt gtataaccag cttgatctac aagggcgcgc 720 taagtctttc agagcactta ccggttttcc tgtttatgtc ccctctgaag attatttgga 780 gggcagcttt ctccaaaagg aattacaaga atgagagggc tgtggaagga tacaaagggt 840 tttcggtccc acagaaaccg ccaaagtctg ccgtaattga actacaacat gaaaacggca 900 gccatctcgg gtacgcgaac tgcattcgct tgtacagtgg agagaacgcc ttggtgacag 960 ctgaacactg tctagaaggc gctttcgcaa cgtcgttgaa aattggaaac aggattccga 1020 tgtcgacttt ctttcccatt ttcaaaagta cccgtaatga tatctccata ctagtaggtc 1080 cacctaactg ggagggtcta ctatcagtca aaggagctca tttcattaca gctgacaaaa 1140 tcggcaaagg tcctgcctct ttctacactc ttgagaaagg ggagtggatg tgccatagtg 1200 ccaccataga tggagcccat caccaattcg tgtctgtttt atgcaacact ggacccggat 1260 attccggaac agggttttgg tcttcaaaga atctgcttgg tgtgcttaaa ggcttcccgc 1320 tggaagagga gtgtaactac aatgttatgt ctgttatacc ctcgatccca ggaatcactt 1380 ccccaaatta tgtgtttgag tcgaccgccg taaaaggccg cgtcttctcg gatgaagctg 1440 tgaaagagct agagcgggaa gcatccgaag ccgtcaagaa gcttgccaga tttaaatcac 1500 ttaccggcaa gaactgggct gatgattatg actccgatga ggattacggt ttggagagag 1560 aggctgcaac aaatgcgccc gcagagaaaa ctgctcaaac aaactcagca gagaagactg 1620 ctccatcaac ttcagcagag aaaactgctc caacaaacaa gcctttaaat gggcaagcgg 1680 caccgtccgc caaaacaaac ggcaactccg acatccccga cgccgctaca agcgcaccac 1740 caatggacaa aatggtcgaa cagatcatca cagctatggt ggggagaatc aatctctcgg 1800 agatagagga gaagatagtg agcagggtgt ctcagaaagc cctgcagaag cccaaacaaa 1860 agaagcgcgg aaggcgtgga gggaagacca agcaaaacag ttcacctcct acttcaacgc 1920 aatctacaag tggggcgccc aagaaggagg ctgcccccca ggcttcagga agtgcgggca 1980 catcccgcgc tactaccacc cccgcaccag aggcgaaacc cagtgggggc aaaaactctg 2040 ccaagttcat cccgagctgg cggagaaaac agcaggattc ggctggccaa aagccggatc 2100 tgaagctgaa ctccaaagcc tgaatctaca ggctgccagg tggctccaac gcgcggagtc 2160 ggccactatc cctggcgcag aagcaagaaa gcgcgtgatt gagaaaacag tggaggcata 2220 cagaaattgt gtaactaacg ccccactgtg ctcccttaaa tccaagctgg attgggctgg 2280 ctttcaacaa gatattcgtg aagcagtcca gtcccttgag ctagacgctg gtgtaggcat 2340 tccctatatc gcgtatggcc tccccacaca ccgaggatgg gttgaggacc ataagcttct 2400 cccagtgctc actcagctga cctttgaccg actacagggg atgtcagagg ccagctttga 2460 ggatatgagc gcagaagagc tggttcaaga agggctctgt gatcctatca gactatttgt 2520 caaaggagag ccccacaaac agagcaaact cgatgaaggc cgctaccgcc tcatcatgtc 2580 tgtttccttg gtggatcaac tggtagcccg ggttctgttc caaaatcaga acaaaaggga 2640 aatttccctg tggaggtctg tgccttccaa acccggtttt ggcctttcaa ctgacactca 2700 aactgctgaa ttcttggagt gtcttcaaaa ggtgtctgga gcgccatccg tggaagaatt 2760 gtgtgcaaat cacaaggagt acacgcgccc aaccgactgt tccggtttcg actggtcagt 2820 cgcgtattgg atgctggagg atgatatgga ggtgagaaat cgcctgacat ttaataacac 2880 ccagctcacc aagcgccttc gggctgcctg gttgaagtgc ataggaaact ccgtcctgtg 2940 cctgtccgat ggcactttac ttgcccaaac tgttcccggt gtgcaaaaga gcggaagtta 3000 caacacaagt tcctccaact ctagaatccg ggttatggct gcccatcaca gtggcgccga 3060 ttgggcaatg gccatggggg acgatgctct cgaagccccc aactccgacc tagaggagta 3120 taaatcacta ggttttaacg tcgaggtagg tcgagaactc gaattctgtt cacacatctt 3180 cagaaatccg actctcgccg ttccggtcaa caccaacaaa atgctttaca agttgatcca 3240 tggttataat ccggaatgtg gcaatccaga agtgattcaa aactatctgg ctgcagtatt 3300 ctctgtgctg caggaactcc gacacgatcg tgagctcgtt gtcaagctcc accagtggtt 3360 ggttccgagt gccaccacaa aagaacactg aaggagctca ctaaaactag ccaagcatac 3420 gcgagttgca agcattggaa gttcaagcct cgttacatca accggacaaa atagattata 3480 aattcttagc gggatttgct ttaggatttt catccgcaat cccattttca gtagccggtt 3540 tatatttagt ttacctaaag atttcctccc acgtgcgatc tattgttaat gagtacggtc 3600 gtggttaaag gaaatgtcaa tggtggtgta caacaaccaa gaaggcgaag aaggcaatcc 3660 cttcgcaggc gcgctaacag agttcagcca gtggttatgg tcacggcccc tgggcaaccc 3720 aggcgccgaa gacgtagaag aggaggcaat cgccgctcaa gaagaactgg agttccccga 3780 ggacgaggct caagcgagac attcgtgttt acaaaggaca acctcatggg caactcccaa 3840 ggaagtttca ccttcgggcc gagtctatca gactgtccgg cattcaagga tggaatactc 3900 aaggcctacc atgagtataa gatcacaagc atcttacttc agttcgtcag cgaggcctct 3960 tccacctcct ccggctccat cgcttatgag ttggaccccc attgcaaagt atcatccctc 4020 cagtcctacg tcaacaagtt ccaaattacg aagggcggcg ccaaaactta tcaagcgcgg 4080 atgataaacg gggtagaatg gcacgattct tctgaggacc agtgccggat actgtggaag 4140 ggaaatggaa aatcttcaga caccgcagga tccttcagag tcaccatcag ggtggctttg 4200 caaaacccca aataggtaga ctccggatca gagcctggtc caagcccaca accaacaccc 4260 actccaactc cccagaagca cgagcgattt attgcttacg ttggcatacc tatgctaact 4320 attcaggcca gggagaacga cgaccaaatc atattgggtt ccttagggag ccaaaggatg 4380 aaatatatag aggacgagaa ccagaactat acagatatta gttctgagta ttactctcaa 4440 tcgagcatgc aagccgtccc tatgtattac ttcaatgtcc cgaaagggca atggtcagtc 4500 gacatcagct gcgaagggta tcaacccact agcagcacct cggatccaaa ccggggtagg 4560 agcgacggga tgatcgcgta ttcaaacgcg gattccgatt attggaatgt tggtgaagcg 4620 gatagtgtca aaatttcgaa gctacgcaac gataacacct accgccaagg tcacccagat 4680 cttgaaatta actcgtgtca ctttcgcgag ggccaactcc ttgaacggga cgctacaatt 4740 agcttccacg ttgaagcgcc tactgatggg cgattctttc tcgttggtcc cgctatccag 4800 aaaaccgcaa agtataacta tactatctca tacggtgact ggacggaccg agacatggaa 4860 ctggggttga tcaccgtggt gcttgatgaa catttagaag gcactggttc ggctaacaga 4920 gtgcggcggc ccccacggga gggccacacc tatatggcct cgccgcgcga accggaagga 4980 aaaccggttg gaaataaacc aagggacgaa accccgacac aaacgcagga aagacaacct 5040 gatcaaactc cgtctgatga cgtatccgat gctggttcgg taaatagcgg cggctcaact 5100 gagtcgctgc aattggagtt cggggtaaac tcagatagta cctacgatgc tacagtcgat 5160 ggtacagact ggcccagaat tcctccacca aggcacccac ctgaacctag agttcccggc 5220 aattcaagaa ctgttactga cttttctccg aaagccgatc tattggagaa ttgggatgcc 5280 gaacacttcg accctggtta ttccaaagag gatgtcgccg ctgctactat tatagcgcac 5340 ggcagtattc aagatgggcg aagtatgttg gagaagagag aggaaaacgt caagaacaaa 5400 acctcctcct ggaagccccc gttacctaaa gcggtgagcc cagccatagc caaattgcgc 5460 tcgattcgca aatcccaacc tctcgaggga gggaccctta agaaagacac tactgatggt 5520 gtctcatcta ttggcagtgg ttctctaaca ggtggcacgc ttaagaggaa ggtaactatt 5580 gaagagcgtt tattgcagac cttaacaact gaacaaaggc tgtggtacga gaatttgaag 5640 aaaactaacc ctctagctgc tacccaatgg ctgtatgaat atcagccacc tccccaagta 5700 gatagaaaca tagctgaaaa gccattccaa gggaggaaat gggtcgactc acgacttaaa 5760 actgagtgtc cgccggacat taagcggaac gaaagccgaa aggtgattag gctctcaacg 5820 cctgctagag accgtcgaaa gacgcgactg tgtagccagg atcctcttac agggttgtgt 5880 agt 5883 //