ID JQ420903; SV 1; linear; genomic RNA; STD; VRL; 5883 BP. XX AC JQ420903; XX DT 10-MAY-2012 (Rel. 112, Created) DT 10-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Potato leafroll virus isolate PBI-6, partial genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5883 RA Jeevalatha A., Chakrabarti S.K., Singh B.P.; RT "Genome sequence of Potato leafroll virus isolates from India"; RL Unpublished. XX RN [2] RP 1-5883 RA Jeevalatha A., Chakrabarti S.K., Singh B.P.; RT ; RL Submitted (13-JAN-2012) to the INSDC. RL Division of Plant Protection, Central Potato Research Institute, Bemloe, RL Shimla, Himachal Pradesh 171001, India XX DR MD5; c246da5cd0380b63f1317b20de8363bc. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC6542260; 31071169. XX FH Key Location/Qualifiers FH FT source 1..5883 FT /organism="Potato leafroll virus" FT /host="potato" FT /isolate="PBI-6" FT /mol_type="genomic RNA" FT /country="India:Patna, Bihar" FT /collection_date="Jan-2011" FT /db_xref="taxon:12045" FT 5'UTR <1..70 FT CDS 71..814 FT /codon_start=1 FT /product="P0" FT /note="ORF 0" FT /db_xref="GOA:I1Z197" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:I1Z197" FT /protein_id="AFJ11875.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLLYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQILGPSI FT IVELDNPTTAAAYRSELLRISSSSYVKNSVGFSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRNLMGNYQHLVRSLLDACTVDYFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 204..2123 FT /codon_start=1 FT /product="P1" FT /note="ORF 1; proteinase; polyprotein" FT /db_xref="GOA:I1Z198" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:I1Z198" FT /protein_id="AFJ11876.1" FT /translation="MNRFTAFAALFFMFSLCSTAKEAGFQHPAFNFRGTSIMSVSSGDY FT SAAPTPQYKSWALPLLSNSTTPPPPLLTDRSYYELVQALMSKIRLDFQMVGDMTWRHLS FT EMLFASWNSVREVSLRAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPGFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYALEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTSSAEKTAPSTPAEKTAPTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKTKQNSSPPTSTQSTS FT GAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT CDS 1528..1668 FT /codon_start=1 FT /product="replication-associated protein 1" FT /note="Rap1" FT /db_xref="UniProtKB/TrEMBL:I1Z199" FT /protein_id="AFJ11877.1" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQAQQRRLLHQLQQRKLLQQTS FT L" FT CDS <1541..3391 FT /codon_start=1 FT /product="P2" FT /note="ORF 2; putative RNA polymerase; translated by FT ribosomal frameshift" FT /db_xref="GOA:I1Z1A0" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I1Z1A0" FT /protein_id="AFJ11878.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINSSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRATNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREDQAKQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3589..5742 FT /codon_start=1 FT /transl_except=(pos:4213..4215,aa:OTHER) FT /product="P5" FT /note="ORF 5; readthrough protein; translated by amber stop FT codon suppression" FT /db_xref="GOA:I1Z1A1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1Z1A1" FT /protein_id="AFJ11879.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTARYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPLREGHTYMAS FT PREREGKPVGDKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLRLDFGVNSDS FT TYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGG FT TLKEDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPLAATQW FT MFEYQPPPQVDRNIAKQPFQGRK" FT CDS 3589..4215 FT /codon_start=1 FT /product="P3" FT /note="ORF 3; major capsid protein" FT /db_xref="GOA:Q84838" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q84838" FT /protein_id="AFJ11880.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3614..4084 FT /codon_start=1 FT /product="P4" FT /note="ORF 4; putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:I1Z1A3" FT /protein_id="AFJ11881.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIRRG" FT CDS 5147..5335 FT /codon_start=1 FT /product="P6" FT /note="ORF 6" FT /db_xref="UniProtKB/TrEMBL:B0FEU5" FT /protein_id="AFJ11882.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP FT NTSTLVIPKKMSLLLLL" FT CDS 5365..5742 FT /codon_start=1 FT /product="P7" FT /note="ORF 7" FT /db_xref="GOA:I1Z1A5" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1Z1A5" FT /protein_id="AFJ11883.1" FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGGTL FT KEDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPLAATQWMF FT EYQPPPQVDRNIAKQPFQGRK" XX SQ Sequence 5883 BP; 1627 A; 1487 C; 1438 G; 1331 T; 0 other; acaaaagaat accaggggaa attgcagctt tagcgcataa actttacact cattgcgaac 60 gttatagcat atgattgtat tgactcagtc tggaaccttg cttttcgacc aaagatttaa 120 actttcaaag tttctttttg ttgtcattgc aacaggtttt cctcttctcc tgcaacaagc 180 gagcttactt tacggttaca atcatgaaca gatttaccgc atttgccgct cttttcttta 240 tgttctccct ttgctcaact gcaaaagagg caggatttca acatccggcc ttcaacttcc 300 gaggcacctc cattatgagt gtctcgagtg gggattactc tgcggcaccc accccgcaat 360 acaaatcttg ggcccttcca ttattgtcga actcgacaac cccaccaccg ccgctgctta 420 cagatcggag ctactacgaa ttagttcaag ctcttatgtc aaaaattcgg ttggattttc 480 aaatggttgg ggacatgaca tggaggcatt tgtcagaaat gctatttgcc tcctggaact 540 ccgtgagaga agtatccctc agagcggcct ccgtaacctt atgggcaatt atcagcattt 600 ggttcggtct ttattggacg cttgcacggt tgattacttt gttcctctgg actttcagca 660 tagaagcctt atgcttaatt ttgctcggtt gtataaccag cttgatctac aagggcgcgc 720 taagtctttc agagcactta ccgggtttcc tgtttatgtc ccctctgaag attatttgga 780 gggcagcttt ctccaaaagg aattacaaga atgagagggc tgtggaagga tacaaagggt 840 tttcggtccc acagaaaccg ccaaagtctg ccgtaatcga actacaacat gaaaacggca 900 gccatctcgg gtacgcgaac tgcattcgct tgtacagtgg agagaacgcc ttggtgacag 960 ctgaacactg tctagaaggc gctttcgcaa cgtcgttgaa aactggaaac aggattccga 1020 tgtcgacttt ctttcccatc ttcaaaagta cccgtaatga tatctccata ctagtaggtc 1080 cacccaactg ggaaggtcta ctatcagtca aaggagctca tttcattaca gccgacaaaa 1140 tcggcaaagg tcctgcctct ttctacgctc ttgagaaagg ggagtggatg tgccatagtg 1200 ccaccataga tggagcccat caccagtttg tgtctgtttt atgcaacact ggacccggat 1260 attccggaac agggttttgg tcttcaaaga atctgcttgg tgtgcttaaa ggcttcccac 1320 tggaagagga gtgtaactac aatgttatgt ctgttatacc ctcgatccca ggaatcactt 1380 ccccaaatta tgtgtttgag tcgaccgccg taaaaggccg tgtcttctcg gatgaagctg 1440 tgaaagagct agagcgggaa gcatccgaag ccgtcaagaa gcttgccaga tttaaatcac 1500 ttaccggcaa gaattgggct gatgattatg actccgatga ggattacggt ctggagagag 1560 aggctgcaac aaatgcgccc gcagagaaaa ctgctcaaac aagctcagca gagaagactg 1620 ctccatcaac tccagcagag aaaactgctc caacaaacaa gcctttaaat gggcaagcgg 1680 caccgtccgc caaaacaaac ggcaactccg acatccccga cgccgctaca agcgcgccac 1740 caatggacaa aatggtcgaa cagatcatca cagctatggt ggggagaatc aatctctcgg 1800 agatagagga gaagatagtg agcagggtgt ctcagaaagc cctgcagaag cccaaacaaa 1860 agaagcgcgg aaggcgtgga gggaagacca agcaaaacag ttcacctcct acttcaacgc 1920 aatctacaag tggggcgccc aagaaggagg ctgcccccca ggcttcagga agtgcgggca 1980 catcccgcgc tactaccacc cccgcaccag aggcgaaacc cagtgggggc aaaaactctg 2040 ccaagttcat cccgagctgg cggagaaaac agcaggattc ggctggccaa aagccggatc 2100 tgaagctgaa ctccaaagcc tgaatctaca ggctgccagg tggctccaac gcgcggagtc 2160 ggccactatc cctggcgcag aagcaagaaa gcgcgtgatt gagaaaacag tggaggcata 2220 cagaaattgt gtaactaacg ccccactgtg ctcccttaaa tccaaactgg attgggctgg 2280 ctttcaacaa gatatccgtg aagcagtcca gtcccttgag ctagacgctg gtgtaggcat 2340 tccctatatc gcgtatggcc tccccacaca ccgaggatgg gttgaggacc ataagcttct 2400 cccagtgctc actcagctga cctttgaccg actacagggg atgtcagagg ccagctttga 2460 ggatatgagc gcagaagagc tggttcaaga agggctctgt gatcctatca gactatttgt 2520 caaaggagag ccccacaaac agagcaaact cgatgaaggc cgctaccgcc tcatcatgtc 2580 tgtttccttg gtggatcaac tagtagcccg ggttctgttc caaaatcaga acaaaaggga 2640 aatttccctg tggaggtctg tgccttccaa acccggtttt ggcctttcaa ctgacactca 2700 aactgctgaa ttcttggagt gtcttcaaaa ggtgtctgga gcgccatctg tggaagaatt 2760 gtgtgcaaat cacaaggagt acacgcgccc aaccgactgt tccggtttcg actggtcagt 2820 cgcgtattgg atgctggagg atgacatgga ggtgagaaat cgcctgacat ttaataacac 2880 ccagctcacc aagcgccttc gggccgcctg gttgaagtgc ataggaaact ccgtcctgtg 2940 cctgtccgat ggcactttac ttgcccaaac tgttcccggt gtacaaaaga gcggaagtta 3000 caatacaagt tcctccaact ctagaattcg ggttatggct gcctatcact gtggcgccga 3060 ctgggcaatg gccatggggg acgatgctct cgaagccccc aactccgacc tggaggagta 3120 taaaacacta ggtttcaaag tcgaggtagg tcgagaactc gaattctgtt cacacatttt 3180 cagaaatccg accctcgccg ttccggtcaa caccaacaaa atgctttaca agttgatcca 3240 tggttataat ccggaatgcg gcaatccaga agtgattcaa aactatctgg ctgcagtatt 3300 ctctgtgctg caggaactcc gacacgatcg tgagctcgtt gccaagctcc accagtggtt 3360 ggttccgagt gccaccacaa aagaacactg aaggagctca ctaaaactag ccaagcatac 3420 gcgagttgca ggcattggaa gttcaagcct cgttacatca accggacaaa atagattata 3480 aattcttagc gggatttgct ttaggattct catccgcaat cccattttca gtagccggtt 3540 tatattttgt ttaccttaaa atttcctccc acgtgcgatc aattgttaat gagtacggtc 3600 gtggttaaag gaaatgtcaa tggtggtgta caacaaccaa gaaggcgaag aaggcaatcc 3660 cttcgcaggc gcgctaacag agttcagcca gtggttatgg tcacggcccc tgggcaaccc 3720 aggcgccgaa gacgcagaag aggaggcaat cgccgctcaa gaagaactgg agttccccga 3780 ggacgaggct caagcgagac attcgtgttt acaaaggaca acctcatggg caactcccaa 3840 ggaagtttca ccttcgggcc gagtctatca gactgtccgg cattcaagga tggaatactc 3900 aaggcctacc atgagtataa gatcacaagc atcttacttc agttcgtcag cgaggcctct 3960 tccacctcct ccggttccat cgcttatgag ttggaccccc attgcaaagt atcatccctc 4020 cagtcctacg tcaacaagtt ccaaattacg aagggcggcg ccaaaactta tcaggcgcgg 4080 atgataaacg gggtagaatg gcacgattct tctgaggatc agtgccggat actgtggaag 4140 ggaaatggaa aatcttcaga taccgcagga tccttcagag tcaccatcag ggtggctttg 4200 caaaacccca aataggtaga ctccggatca gagcctggtc caagcccaca accaacaccc 4260 actccaactc cccagaagca cgagcgattt attgcttacg ttggcatacc catgctaacc 4320 attcaggcca gggagaacga cgaccaaatc atattgggtt ccttagggag ccaaaggatg 4380 aaatatatag aagacgagaa ccagaactat acaaatgtta gttctgagta ttactctcaa 4440 tcgagcatgc aagccgtccc tatgtattac ttcaatgtcc cgaaagggca atggtcagtc 4500 gacatcagct gcgaagggta tcaacccact agcagcacct cggatccaaa ccggggtagg 4560 agtgacggga tgatcgcgta ttcaaacgcg gactccgatt attggaatgt tggtgaagcg 4620 gatggtgtaa aaatttcgaa gctacgcaac gataacacct accgccaagg tcacccagaa 4680 cttgaaatta actcgtgtca ttttcgcgag ggccaactcc ttgaacggga cgctacaatt 4740 agcttccacg ttgaagcgcc tactgatggg cgattctttc tcgttggtcc cgctatccag 4800 aaaaccgcaa ggtataacta tactatctca tacggtgact ggacggaccg agacatggaa 4860 ctggggctga tcactgtggt gcttgatgaa catttagaag gcactggttc ggctaacaga 4920 gtgcggcggc ccctacggga gggccacacc tatatggctt cgccgcgcga acgggaagga 4980 aaaccggttg gagataaacc aagggacgaa accccgatac aaacgcagga aagacaacct 5040 gatcaaactc cgtctgacga cgtatccgat gctggttcgg taaacagcgg cggctcaact 5100 gagtcgctgc gattggactt cggggtaaac tcagatagta cctacgatgc tacagtcgat 5160 ggtacagact ggcccagaat tcctccacca aggcacccac ctgaacctag agtttccggc 5220 aattcaagaa ctgttactga cttttctccg aaagccgatc tattggagaa ttgggatgcc 5280 gaacacttcg accctggtta ttccaaagaa gatgtcgctg ctgctactat tatagcgcac 5340 ggcagtattc aagatgggcg aagtatgttg gagaagagag aggaaaatgt caagaacaaa 5400 acctcctcct ggaagccccc gttacctaaa gcggtgagcc cagccatagc caaattgcgc 5460 tcgattcgca aatcccaacc cctcgaggga gggaccctta aggaagacgc cactgatggt 5520 gtctcatcta ttggcagtgg ttctctaaca ggtggcacgc ttaagaggaa ggcaactatt 5580 gaagagcgtt tactgcagac cttaacaact gaacaaaggc tgtggtacga gaatttgaag 5640 aaaactaacc ctctagctgc tacccaatgg atgtttgaat atcagccgcc tccccaagta 5700 gatagaaaca tagctaaaca gccattccaa gggaggaaat gagtcgactc acgacttaaa 5760 actgagtgtc cgccggacat taagcggaac gaaagccgaa aggtgattag gctctcaacg 5820 cctgctagag accgtcgaaa gacgcgactg tgtagccagg atcctcttac agggttgtgt 5880 agt 5883 //