ID JQ420902; SV 1; linear; genomic RNA; STD; VRL; 5883 BP. XX AC JQ420902; XX DT 10-MAY-2012 (Rel. 112, Created) DT 10-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Potato leafroll virus isolate KHPI-1, partial genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5883 RA Jeevalatha A., Chakrabarti S.K., Singh B.P.; RT "Genome sequence of Potato leafroll virus isolates from India"; RL Unpublished. XX RN [2] RP 1-5883 RA Jeevalatha A., Chakrabarti S.K., Singh B.P.; RT ; RL Submitted (13-JAN-2012) to the INSDC. RL Division of Plant Protection, Central Potato Research Institute, Bemloe, RL Shimla, Himachal Pradesh 171001, India XX DR MD5; 759b61b8495efb6e351d3f4bc625a816. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5883 FT /organism="Potato leafroll virus" FT /host="potato" FT /isolate="KHPI-1" FT /mol_type="genomic RNA" FT /country="India:Kufri, Himachal Pradesh" FT /collection_date="Aug-2010" FT /db_xref="taxon:12045" FT 5'UTR <1..70 FT CDS 71..814 FT /codon_start=1 FT /product="P0" FT /note="ORF 0" FT /db_xref="GOA:I1Z188" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:I1Z188" FT /protein_id="AFJ11866.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYGSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACEVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 204..2123 FT /codon_start=1 FT /product="P1" FT /note="ORF 1; proteinase; polyprotein" FT /db_xref="GOA:I1Z189" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:I1Z189" FT /protein_id="AFJ11867.1" FT /translation="MNRFTVYAALSFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTLPPPLLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS FT EMLFASWNSVKEASLKAASVTLWAIINIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNEKAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGVTSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKAAPTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNRQNSSPPTSTQSTS FT GAPKKEAAPQASGSVGTSRATTTPAPEARPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT CDS 1528..1668 FT /codon_start=1 FT /product="replication-associated protein 1" FT /note="Rap1" FT /db_xref="UniProtKB/TrEMBL:B0FEU0" FT /protein_id="AFJ11868.1" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQTQQRRLLHQLQQRKLLQQTS FT L" FT CDS <1541..3391 FT /codon_start=1 FT /product="P2" FT /note="ORF 2; putative RNA polymerase; translated by FT ribosomal frameshift" FT /db_xref="GOA:I1Z191" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I1Z191" FT /protein_id="AFJ11869.1" FT /translation="GLRFGERGCNKCARRENCSNKLSREDCSINFSRESCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSKQGVSESPAEA FT QTKEARKAWREEQAKQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KRIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3589..5742 FT /codon_start=1 FT /transl_except=(pos:4213..4215,aa:OTHER) FT /product="P5" FT /note="ORF 5; readthrough protein; translated by amber stop FT codon suppression" FT /db_xref="GOA:I1Z192" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1Z192" FT /protein_id="AFJ11870.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS FT PREPEGKPVGNKPRDETLMQTQERQPDQTPSDDVSVAGSVNSRGSTESLRLEFGVNSDS FT TYDATVDGTDWPRIPPPRHPPESRVSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLSKAVSPAIAKLRSIRKSQPLEGG FT TFEKDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPPAATQW FT LFEYQPPPQVDRNIATNPFQGRK" FT CDS 3589..4215 FT /codon_start=1 FT /product="P3" FT /note="ORF 3; major capsid protein" FT /db_xref="GOA:Q84838" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q84838" FT /protein_id="AFJ11871.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3614..4084 FT /codon_start=1 FT /product="P4" FT /note="ORF 4; putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:I1Z194" FT /protein_id="AFJ11872.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIVKYHPSSPTSTSSKLRRAAPKLIRRG" FT CDS 5147..5335 FT /codon_start=1 FT /product="P6" FT /note="ORF 6" FT /db_xref="UniProtKB/TrEMBL:B0FEU5" FT /protein_id="AFJ11873.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP FT NTSTLVIPKKMSLLLLL" FT CDS 5365..5742 FT /codon_start=1 FT /product="P7" FT /note="ORF 7" FT /db_xref="GOA:I1Z196" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1Z196" FT /protein_id="AFJ11874.1" FT /translation="MLEKREENVKNKTSSWKPPLSKAVSPAIAKLRSIRKSQPLEGGTF FT EKDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPPAATQWLF FT EYQPPPQVDRNIATNPFQGRK" XX SQ Sequence 5883 BP; 1625 A; 1485 C; 1440 G; 1333 T; 0 other; acaaaagaat accaggggaa attgcagctt tagcgcataa actctacact cgttgcaaac 60 gttatagcat atgattgtat tgacccagtc tggaaccttg cttttcgacc aaagatttaa 120 actttcaaag tttctcttcg ttgtcattgc aacaggcttt cctcttctcc tgcaacaagc 180 gagcttaatt tacggttaca atcatgaaca gatttaccgt atatgccgct ctttccttta 240 tgttctccct ttgctcaact gcaaaagagg caggatttca acatccggcc ttcaacttcc 300 gaggcacctc cactatgagt gccttgagtg gggattactc tgcggcaccc accccgctat 360 acaaatcgtg ggccctacca tcgtcattaa acttgacgac cctaccaccg ccgctgctta 420 cggatcggag ctactacgag ttagttcaag ctcttatatc caaaatgcgg ctggattgtc 480 aaacggttgg ggacatgaca tggaggcatt tgtcagaaat gctatttgcc tcctggaact 540 ccgtgaaaga agcatccctc aaagcggcct ccgtgacctt atgggcaatt atcaacattt 600 ggttcggtct ctattggacg cttgcgaggt tgatcacttt gttcctctgg actttcagca 660 tagaagcctt atgcttaatt ttgctcggtt gtataaccag cttgatctac aagggcgcgc 720 taagtctttc agagcactta ccggttttcc tgtttatgtc ccctctgaag attatttgga 780 gggcagcttt ctccaaaagg aattacaaga atgagaaggc tgtggaagga tacaaagggt 840 tttcggtccc acagaaaccg ccaaagtctg ccgtaattga actacaacat gaaaacggca 900 gccatctcgg gtacgcgaac tgtattcgct tgtacagtgg agagaacgcc ttggtgacag 960 ctgaacactg tctagaaggc gctttcgcaa cgtcgttgaa aactggaaac aggattccga 1020 tgtcgacttt ctttcccatt ttcaaaagtg cccgtaatga tatctccata ctagtaggtc 1080 cacccaactg ggaaggtcta ctatcagtca aaggagctca tttcattaca gctgacaaaa 1140 tcggcaaagg tcctgcctct ttctacactc ttgagaaagg ggagtggatg tgccatagtg 1200 ccaccataga tggagcccat caccagttcg tgtctgtttt atgcaacact ggacccggat 1260 attccggaac agggttttgg tcttcaaaga atctgcttgg tgtgcttaaa ggcttcccac 1320 tggaagagga gtgtaactac aatgttatgt ctgttatacc ctcgatccca ggagtcactt 1380 ccccaaatta tgtgtttgag tcgaccgccg taaaaggccg cgtcttctcg gatgaagctg 1440 tgaaagagct agagcgggaa gcatccgaag ccgtcaagaa gcttgccaga tttaaatcac 1500 ttaccggcaa gaactgggct gatgattatg actccgatga ggattacggt ttggagagag 1560 aggctgcaac aaatgcgccc gcagagaaaa ctgctcaaac aaactcagca gagaagactg 1620 ctccatcaac ttcagcagag aaagctgctc caacaaacaa gcctttaaat gggcaagcgg 1680 caccgtccgc caaaacaaac ggcaactccg acatccccga cgccgctaca agcgcaccac 1740 caatggacaa aatggtcgaa cagatcatca cagctatggt ggggagaatc aatctctcgg 1800 agatagagga gaagatagta agcagggtgt ctcagaaagc cctgcagaag cccaaacaaa 1860 agaagcgcgg aaggcgtgga gggaagaaca ggcaaaacag ttcacctcct acttcaacgc 1920 aatctacaag tggggcgccc aagaaggagg ctgcccccca ggcttcagga agtgtgggca 1980 catcccgcgc tactaccacc cccgcaccag aggcgagacc cagtgggggc aaaaactctg 2040 ccaagttcat cccgagctgg cggagaaaac agcaggattc ggctggccaa aagccggatc 2100 tgaagctgaa ctccaaagcc tgaatctaca ggctgccagg tggctccaac gcgcggagtc 2160 ggccactatc cctggcgcag aagcaagaaa gcgcgtgatt gagaaaacag tggaggcata 2220 cagaaattgt gtaactaacg ccccactgtg ctcccttaaa tccaaactgg attgggctgg 2280 ctttcaacaa gatatccgtg aagcagtcca gtcccttgag ctagacgctg gtgtaggcat 2340 tccctatatc gcgtatggcc tccccacaca ccgaggatgg gttgaggacc ataagcttct 2400 cccagtgctc actcagctga cctttgaccg actacagggg atgtcagagg ccagctttga 2460 ggatatgagt gcagaagagc tggttcaaga agggctctgt gatcctatca gactatttgt 2520 caaaggagag ccccacaaac agagcaaact cgatgaaggc cgctaccgcc tcatcatgtc 2580 tgtttccttg gtggatcaac tggtagcccg ggttctgttc caaaatcaga acaaaaggga 2640 aatttccctg tggaggtctg tgccttccaa acccggtttt ggcctttcaa ctgacactca 2700 aactgctgaa ttcttggagt gtcttcaaaa ggtgtctgga gcgccatctg tggaagaatt 2760 gtgtgcaaat cacaaggagt acacgcgccc aaccgactgt tccggtttcg actggtcagt 2820 cgcgtattgg atgctggagg atgatatgga ggtgagaaat cgcctgacat ttaataacac 2880 ccagctcacc aagcgccttc gggctgcctg gttgaagcgc ataggaaact ctgtcctgtg 2940 cctgtccgat ggcactttac ttgcccaaac tgttcccggt gtgcaaaaga gcggaagtta 3000 caatacaagt tcttccaact ctagaatccg ggttatggct gcctatcact gtggcgccga 3060 ctgggcaatg gccatggggg acgatgctct cgaagccccc aactccgacc tggaggagta 3120 taaaacacta ggtttcaaag tcgaggtagg tcgagaactc gaattctgtt cgcacatctt 3180 cagaaatccg accctcgccg ttccggtcaa caccaacaaa atgctttaca agttgatcca 3240 tggttataat ccggaatgtg gcaatccaga agtgattcaa aactatctgg ctgcagtatt 3300 ctctgtgctg caggaactcc gacacgatcg tgagctcgtt gccaagctcc accagtggtt 3360 ggttccgagt gccaccacaa aagaacactg aaggagctca ctataactag ccaagcatac 3420 gcgagttgca agcattggaa gtttaagcct cgttacatca accggacaaa atagattata 3480 aattcttagc gggatttgct ttaggattct catccgcaat cccattttca gtagccggtt 3540 tatatttagt ttacctaaag atttcctccc acgtgcgatc aattgttaat gagtacggtc 3600 gtggttaaag gaaatgtcaa tggtggtgta caacaaccaa gaaggcgaag aaggcaatcc 3660 cttcgcaggc gcgctaacag agttcagcca gtggttatgg tcacggcccc tgggcaaccc 3720 aggcgccgaa gacgcagaag aggaggcaat cgccgctcaa gaagaactgg agttccccga 3780 ggacgaggct caagcgagac attcgtgttt acaaaggaca acctcatggg caactcccaa 3840 ggaagtttca ccttcgggcc gagtctatca gactgtccgg cattcaagga tggaatactc 3900 aaggcctacc atgagtataa gatcacaagc atcttacttc agttcgtcag cgaggcctct 3960 tccacctcct ccggttccat cgcttatgag ttggaccccc attgtaaagt atcatccctc 4020 cagtcctacg tcaacaagtt ccaaattacg aagggcggcg ccaaaactta tcaggcgcgg 4080 atgataaacg gggtagaatg gcacgattct tctgaggatc agtgccggat actgtggaag 4140 ggaaatggaa aatcttcaga taccgcagga tccttcagag tcaccatcag ggtggctttg 4200 caaaacccca aataggtaga ctccggatca gagcctggtc caagcccaca accaacaccc 4260 actccaactc cccagaagca cgagcgtttt attgcttacg ttggcatacc tatgctaacc 4320 attcaggcca gggagaacga cgaccaaatc atattgggtt ccttagggag ccaaaggatg 4380 aaatatatag aggacgagaa ccagaactat acaaacgtta gttctgagta ttactcccaa 4440 tcgagcatgc aagccgtccc tatgtattac ttcaatgtcc cgaaagggca atggtcagtc 4500 gacatcagct gcgaagggta tcaacccact agcagcacct cggatccaaa ccggggtagg 4560 agtgacggga tgatcgcgta ttctaacgcg gattccgatt attggaatgt tggtgaagcg 4620 gatggtgtca aaatttcgaa gctacgcaac gataacacct accgccaagg tcacccagaa 4680 cttgaaatta actcgtgtca ttttcgcgag ggccaactcc ttgaacggga cgctactatt 4740 agcttccacg ttgaagcgcc tactgatggg cgattctttc tcgttggtcc cgctatccag 4800 aaaaccgcaa agtataacta tactatctca tacggtgact ggacggaccg agatatggaa 4860 ctggggctga tcaccgtggt gcttgatgaa catttagaag gcactggttc ggctaacaga 4920 gtgcggcggc ccccacggga gggccacacc tatatggcct cgccgcgcga accggaagga 4980 aaaccggttg gaaataaacc aagggacgaa accttgatgc aaacgcagga aagacaacct 5040 gatcaaactc cgtctgacga cgtatccgtt gctggttcgg taaacagcag aggctcaact 5100 gagtcgctgc gattggagtt cggggtaaac tcagatagta cctacgatgc tacagtcgat 5160 ggtacagact ggcccagaat tcctccacca aggcacccac ctgaatctag agtttccggc 5220 aattcaagaa ctgttactga cttttctccg aaagccgatc tattggagaa ttgggatgcc 5280 gaacacttcg accctggtta ttccaaagaa gatgtcgctg ctgctactat tatagcgcac 5340 ggcagtattc aagatgggcg aagtatgttg gagaagagag aggaaaatgt caagaacaaa 5400 acctcctcct ggaagccccc gttatctaaa gcggtgagcc cagccatagc caaattgcgc 5460 tcgattcgca aatcccaacc cctcgaggga gggacctttg agaaagacgc cactgatggt 5520 gtctcatcta ttggcagtgg ttctctaaca ggtggcacgc ttaagaggaa ggcaactatt 5580 gaagagcgtt tactgcagac cttaacaact gaacaaaggc tgtggtacga gaatttgaag 5640 aaaactaacc ctccagctgc tacccaatgg ctgtttgaat atcagccacc tccccaagta 5700 gatagaaaca tagctacaaa tccattccaa gggaggaaat gagtcgactc acgacttaaa 5760 actgagtgtc cgccggacat taagcggaac gaaagccgaa aggtgattag gctctcaacg 5820 cctgctagag accgtcgaaa gacgcgactg tgtagccagg atcctcttac agggttgtgt 5880 agt 5883 //