ID JQ420901; SV 1; linear; genomic RNA; STD; VRL; 5883 BP. XX AC JQ420901; XX DT 10-MAY-2012 (Rel. 112, Created) DT 10-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Potato leafroll virus isolate JPI-1, partial genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5883 RA Jeevalatha A., Chakrabarti S.K., Singh B.P.; RT "Genome sequence of Potato leafroll virus isolates from India"; RL Unpublished. XX RN [2] RP 1-5883 RA Jeevalatha A., Chakrabarti S.K., Singh B.P.; RT ; RL Submitted (13-JAN-2012) to the INSDC. RL Division of Plant Protection, Central Potato Research Institute, Bemloe, RL Shimla, Himachal Pradesh 171001, India XX DR MD5; 8bb8b04cedac625793779351066cc567. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5883 FT /organism="Potato leafroll virus" FT /host="potato" FT /isolate="JPI-1" FT /mol_type="genomic RNA" FT /country="India:Jalandhar, Punjab" FT /collection_date="Nov-2010" FT /db_xref="taxon:12045" FT 5'UTR <1..70 FT CDS 71..814 FT /codon_start=1 FT /product="P0" FT /note="ORF 0" FT /db_xref="GOA:I1Z179" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:I1Z179" FT /protein_id="AFJ11857.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVPPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACEVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 204..2123 FT /codon_start=1 FT /product="P1" FT /note="ORF 1; proteinase; polyprotein" FT /db_xref="GOA:I1Z180" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:I1Z180" FT /protein_id="AFJ11858.1" FT /translation="MNRFTAYAALFFMFPLCSTAKEAGFQHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQPPPPLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS FT EMLFASWNSVREVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELRHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFSPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTPAEKTAPTNKPLNGQAAPSAKTNGNSDIPDVAISAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRRRRGGKNRQNSSPPTSTQSTS FT GAPKKEAAPQASGSVGTSRATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT CDS 1528..1668 FT /codon_start=1 FT /product="replication-associated protein 1" FT /note="Rap1" FT /db_xref="UniProtKB/TrEMBL:B0FEU0" FT /protein_id="AFJ11859.1" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQTQQRRLLHQLQQRKLLQQTS FT L" FT CDS <1541..3391 FT /codon_start=1 FT /product="P2" FT /note="ORF 2; putative RNA polymerase; translated by FT ribosomal frameshift" FT /db_xref="GOA:I1Z182" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I1Z182" FT /protein_id="AFJ11860.1" FT /translation="GLRFGERGCNKCARRENCSNKLSREDCSINSSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEAQKAWREEQAKQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLSLQAARWLQRAESVTIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTSEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRGLVAKLHQWLVPSATTKEH" FT CDS 3589..5742 FT /codon_start=1 FT /transl_except=(pos:4213..4215,aa:OTHER) FT /product="P5" FT /note="ORF 5; readthrough protein; translated by amber stop FT codon suppression" FT /db_xref="GOA:I1Z183" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1Z183" FT /protein_id="AFJ11861.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGSNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDIAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQGMKYIEDENQNYTNISSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPDLEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPLREGHTYMAS FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVDSGGSTESLQLEFGANSDS FT TYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSLRKSQPLEGG FT TLKKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPQAATQW FT LFEYQPPPQVDRNIAEKPFQGRK" FT CDS 3589..4215 FT /codon_start=1 FT /product="P3" FT /note="ORF 3; major capsid protein" FT /db_xref="GOA:I1Z184" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:I1Z184" FT /protein_id="AFJ11862.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGSNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDIAGSFRVTIRVALQNPK" FT CDS 3614..4084 FT /codon_start=1 FT /product="P4" FT /note="ORF 4; putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:I1Z185" FT /protein_id="AFJ11863.1" FT /translation="MSMVVFNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPAPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT CDS 5147..5335 FT /codon_start=1 FT /product="P6" FT /note="ORF 6" FT /db_xref="UniProtKB/TrEMBL:I1Z186" FT /protein_id="AFJ11864.1" FT /translation="MLQSMVQIGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP FT NTSTLVIPKKMSLLLLL" FT CDS 5365..5742 FT /codon_start=1 FT /product="P7" FT /note="ORF 7" FT /db_xref="GOA:I1Z187" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1Z187" FT /protein_id="AFJ11865.1" FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSLRKSQPLEGGTL FT KKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPQAATQWLF FT EYQPPPQVDRNIAEKPFQGRK" FT 3'UTR 5743..>5883 XX SQ Sequence 5883 BP; 1629 A; 1489 C; 1440 G; 1325 T; 0 other; acaaaagaat accaggggaa attgcagctt tagcgcataa actctacact cattgcaaac 60 gttatagcat atgattgtat tgacccagtc tggaaccttg ctttttgacc aaagatttaa 120 actctcaaag tttctcttcg ttgtcattgc aacaggcttt cctcttctcc tgcagcaagc 180 gagcttaatt tacggctata atcatgaaca gatttaccgc atatgccgct cttttcttta 240 tgttccccct ttgctcaact gcaaaagagg caggatttca acatccggcc ttcaacttcc 300 gaggcacctc cactatgagt gccttgagtg gggattactc tgcggcaccc accccgctat 360 acaaatcgtg ggccctacca tcgtcattaa acttgacgac ccaaccaccg ccgccgctta 420 cagatcggag ctactacgag ttagttcaag ctcttatatc caaaatgcgg ctggattgtc 480 aaacggttgg ggacatgaca tggaggcatt tgtcagaaat gctatttgcc tcctggaact 540 ccgtgagaga agtatccctc aaagcggcct ccgtgacctt atgggcaatt atcagcattt 600 ggttcggtct ctattggacg cttgcgaggt tgatcacttt gttcctctgg actttcagca 660 tagaagcctt atgcttaatt ttgctcggtt gtataaccag cttgatctac aagggcgcgc 720 taagtctttc agagcactta ccggttttcc tgtttatgtc ccctctgaag attatttgga 780 gggcagcttt ctccaaaagg aattacaaga atgagagggc tgtggaagga tacaaagggt 840 tttcggtccc acagaaaccg ccaaagtctg ccgtaattga actacgacat gaaaacggca 900 gccatctcgg gtacgcgaac tgcattcgct tgtacagtgg agagaacgcc ttggtgacag 960 ctgaacactg tctagaaggc gctttcgcaa cgtcgttgaa aactggaaac aggattccga 1020 tgtcgacttt ctctcccatt ttcaaaagta cccgtaatga tatctccata ctagtaggtc 1080 cacctaactg ggagggtcta ctatcagtca aaggagctca tttcattaca gctgacaaaa 1140 tcggcaaagg tcctgcctct ttctacactc ttgagaaagg ggagtggatg tgtcatagtg 1200 ccaccataga tggagcccat caccagttcg tgtctgtttt atgcaacact ggacccggat 1260 attccggaac agggttttgg tcttcaaaga atctgcttgg tgtgcttaaa ggcttcccgc 1320 tggaagagga gtgtaactac aatgttatgt ctgttatacc ctcgatccca ggaatcactt 1380 ccccaaatta tgtgtttgag tcgaccgccg taaaaggccg cgtcttctcg gatgaagctg 1440 tgaaagagct agagcgggaa gcatccgaag ccgtcaagaa gcttgccaga tttaaatcac 1500 ttactggcaa gaactgggct gatgattatg actccgatga ggattacggt ttggagagag 1560 aggctgcaac aaatgcgccc gcagagaaaa ctgctcaaac aaactcagca gagaagactg 1620 ctccatcaac tccagcagag aaaactgctc caacaaacaa gcctttaaat gggcaagcgg 1680 caccgtccgc caaaacaaac ggcaactccg acatccccga cgtcgctata agcgcaccac 1740 caatggacaa aatggtcgaa cagatcatca cagctatggt ggggagaatc aatctctcgg 1800 agatagagga gaagatagtg agcagggtgt ctcagaaagc cctgcagaag cccaaacaaa 1860 agaagcgcag aaggcgtgga gggaagaaca ggcaaaacag ttcacctcct acttcaacgc 1920 aatctacaag tggggcgccc aagaaggagg ctgcccccca ggcttcagga agtgtgggca 1980 catcccgcgc tactaccacc cccgcaccag aggcgaaacc cagtgggggc aaaaactctg 2040 ccaagttcat cccgagctgg cggagaaaac agcaggattc ggctggccaa aagccggatc 2100 tgaagctgaa ctccaaagcc tgagtctaca ggctgccagg tggctccaac gcgcggagtc 2160 ggtcactatc cctggcgcag aagcaagaaa gcgcgtgatt gagaaaacag tggaggcata 2220 cagaaattgt gtaactaacg ccccgctgtg ctcccttaaa tccaaactgg attgggctgg 2280 ctttcaacaa gatatccgtg aagcagtcca gtcccttgag ctagacgctg gtgtaggcat 2340 tccctatatc gcgtatggcc tccccacaca ccgaggatgg gttgaggacc ataagcttct 2400 cccagtgctc actcagctga cctttgaccg actacagggg atgtcagagg ccagctttga 2460 ggatatgagc gcagaagagc tggttcaaga agggctctgt gatcctatca gactatttgt 2520 caaaggagag ccccacaaac agagcaaact cgatgaaggc cgctaccgcc tcatcatgtc 2580 tgtttccttg gtggatcaac tggtagcccg ggttctgttc caaaatcaga acaaaaggga 2640 aatttccctg tggaggtctg tgccttccaa acccggtttt ggcctttcaa ctgacactca 2700 aacttctgaa ttcttggagt gtcttcaaaa ggtgtctgga gcgccatctg tggaagaatt 2760 gtgtgcaaat cacaaggagt acacgcgccc aaccgactgt tccggtttcg actggtcagt 2820 cgcgtattgg atgctggagg atgatatgga ggtgagaaat cgcctgacat ttaataacac 2880 ccagctcacc aagcgccttc gggctgcctg gttgaagtgc ataggaaact ccgtcctgtg 2940 cctgtccgat ggcactttac ttgcccaaac tgttcccggt gtgcaaaaga gcggaagtta 3000 caatacaagt tcctccaact ctagaatccg ggttatggct gcctatcact gtggcgccga 3060 ctgggcaatg gccatggggg acgatgctct cgaagccccc aactccgacc tggaggagta 3120 taaaacacta ggtttcaaag tcgaggtagg tcgagaactc gaattctgtt cacacatctt 3180 cagaaatccg accctcgccg ttccggtcaa caccaacaaa atgctttaca agttgatcca 3240 tggttataat ccggaatgtg gcaatccaga agtgattcaa aactatctgg ctgcagtatt 3300 ctctgtgctg caggaactcc gacacgatcg ggggctcgtt gccaagctcc accagtggtt 3360 ggttccgagt gccaccacaa aagaacactg aaggagctca ctaaaactag ccaagcatac 3420 gcgagttgca agcattggaa gttcaagcct cgttacatca accggacaaa atagattata 3480 aattcttagc gggatttgct ttaggatttt catccgcaat cccattttca gtagccggtt 3540 tatattttgt ttacctaaag atttcctccc acgtgcgatc aattgttaat gagtacggtc 3600 gtggttaaag gaaatgtcaa tggtggtgtt caacaaccaa gaaggcgaag aaggcaatcc 3660 cttcgcaggc gcgctaacag agttcagcca gtggttatgg tcacggcccc tgggcaaccc 3720 aggcgccgaa gacgcagaag aggaagcaat cgccgctcaa gaagaactgg agttccccga 3780 ggacgaggct caagcgagac attcgtgttt acaaaggaca acctcatggg caactcccaa 3840 ggaagtttca ccttcgggcc gagtctatca gactgtccgg cattcaagga tggaatactc 3900 aaggcctacc atgagtataa gatcacaagc atcttacttc agttcgtcag cgaggcctct 3960 tccacctcct ccggctccat cgcttatgag ttggaccccc attgcaaagt atcatccctc 4020 cagtcctacg tcaacaagtt ccaaattacg aagggcggcg ccaaaactta tcaagcgcgg 4080 atgataaacg gggtagaatg gcacgattct tctgaggatc agtgccggat actgtggaag 4140 ggaaatggaa aatcttcaga tatcgcagga tccttcagag tcaccatcag ggtggctttg 4200 caaaacccca aataggtaga ctccggatca gagcctggtc caagcccaca accaacaccc 4260 actccaactc cccagaaaca cgagcgattt attgcttacg ttggcatacc tatgctaacc 4320 attcaggcca gggagaacga cgaccaaatc atattgggtt ccttagggag ccaagggatg 4380 aaatacatag aggacgagaa ccagaactat acaaatatta gttctgagta ttactctcaa 4440 tcgagcatgc aagccgtccc tatgtattac ttcaatgtcc cgaaagggca atggtcagtc 4500 gacatcagct gcgaagggta tcaacccact agcagcacct cggatccaaa ccggggtagg 4560 agtgacggga tgatcgcgta ttcaaacgcg gattccgatt attggaatgt tggtgaagcg 4620 gatggtgtca aaatttcgaa gctacgcaac gataacacct accgccaagg tcacccagat 4680 cttgaaatta actcgtgtca ttttcgcgag ggccaactcc ttgaacggga cgctacaatt 4740 agcttccacg ttgaagcgcc tactgatggg cgattctttc tcgttggtcc cgctatccag 4800 aaaaccgcaa agtataacta tactatctca tacggtgact ggacggaccg agacatggaa 4860 ctggggttga tcaccgtggt gcttgatgaa catttagaag gcactggttc ggctaacaga 4920 gtgcggcggc ccctacggga gggccacacc tatatggcct cgccgcgcga accggaagga 4980 aaaccggttg gaaataaacc aagggacgaa accccgatac aaacgcagga aagacaacct 5040 gaccaaactc cgtctgacga cgtatccgat gctggttcgg tagacagcgg cggctcaact 5100 gagtcgctgc aattggagtt cggggcaaac tcagatagta cctacgatgc tacagtcgat 5160 ggtacagatt ggcccagaat tcctccacca aggcacccac ctgaacctag agtttccggc 5220 aattcaagaa ctgttactga cttttctccg aaagccgatc tattggagaa ttgggatgcc 5280 gaacacttcg accctggtta ttccaaagaa gatgtcgctg ctgctactat tatagcgcac 5340 ggcagtattc aagatgggcg aagtatgttg gagaagagag aggaaaatgt caagaacaaa 5400 acctcctcct ggaagccccc gttacctaaa gcggtgagcc cagccatagc caaattgcgt 5460 tcgcttcgca aatcccaacc cctcgaggga gggaccctta agaaagacgc cactgatggt 5520 gtctcatcta tcggcagtgg ttctctaaca ggtggcacac ttaagaggaa ggtaactatt 5580 gaagagcgtt tactgcagac cttaacaact gaacaaaggc tgtggtacga gaatttgaag 5640 aaaactaacc ctcaagctgc tacccaatgg ctgtttgaat atcagccacc tccccaagta 5700 gatagaaaca tagctgaaaa gccattccaa gggaggaaat gagtcgactc acgacttaaa 5760 actgagtgtc cgccggacat taagcggaac gaaagccgaa aggtgattag gctctcaacg 5820 cctgctagag accgtcgaaa gacgcgactg tgtagccagg atcctcttac agggttgtgt 5880 agt 5883 //