ID   JQ412057; SV 1; circular; genomic DNA; STD; VRL; 2220 BP.
XX
AC   JQ412057;
XX
DT   11-APR-2012 (Rel. 112, Created)
DT   09-JUN-2017 (Rel. 133, Last updated, Version 3)
XX
DE   Cassava associated gemycircularvirus 1 isolate G5, complete genome.
XX
KW   .
XX
OS   Cassava associated gemycircularvirus 1
OC   Viruses; Genomoviridae; Gemycircularvirus.
XX
RN   [1]
RP   1-2220
RX   PUBMED; 22465471.
RA   Dayaram A., Opong A., Jaschke A., Hadfield J., Baschiera M., Dobson R.C.,
RA   Offei S.K., Shepherd D.N., Martin D.P., Varsani A.;
RT   "Molecular characterisation of a novel cassava associated circular ssDNA
RT   virus";
RL   Virus Res. 166(1-2):130-135(2012).
XX
RN   [2]
RP   1-2220
RA   Varsani A., Dayaram A., Opong A., Jaeschke A., Hadfield J., Baschiera M.,
RA   Shepherd D.N., Dobson R.C.J., Offei S.K., Martin D.P.;
RT   ;
RL   Submitted (16-JAN-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 1f6a68b6e9e718ddff227626852ca04d.
DR   EuropePMC; PMC5399927; 28458911.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2220
FT                   /organism="Cassava associated gemycircularvirus 1"
FT                   /host="cassava"
FT                   /isolate="G5"
FT                   /mol_type="genomic DNA"
FT                   /country="Ghana"
FT                   /lat_lon="7.76 N 0.69 W"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1985374"
FT   CDS             106..1053
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="UniProtKB/TrEMBL:I0AY94"
FT                   /protein_id="AFH54231.1"
FT                   /translation="MPRATRTSDRLGRGRRRSTRRSSRRSVAKRPPYRKYLRKMSKRRI
FT                   LNITSTKKKDTMTGYTNSTPANQTGGTVYSTDPAIVTGGLNANQCNAFLWCATARTNQV
FT                   INPTQNTLVPGNKFYTACRTDSNPYMVGLSEKIEIQCNSGMPWQWRRICWTQKGGQGLP
FT                   ANSTSFNLSQQNAITGWNRVMNQVAGNPGTGDQYNLFHHIFRGQVGSDWVDVMTAPLDP
FT                   QHITVKYDKVVTLASGNEEGFIRAYRRWHPMKKTLSYADEEYGNVENADAFSQVGKKGM
FT                   GDYYVLDLFRARQGAQTNDSISIRPCATLYWHEK"
FT   CDS             complement(join(1028..1426,1599..2189))
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /db_xref="GOA:I0AY95"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="UniProtKB/TrEMBL:I0AY95"
FT                   /protein_id="AFH54232.1"
FT                   /translation="MPFYFNARYALITYAQCDALDGFRVMDHFSGLGAECIIAREIHQD
FT                   GGVHLHCFIDFGRKFRSRRTDIFDVDGRHPNIEPSWGTPWRGYDYAIKDGDVICGGLER
FT                   PEQPRSERVKKDWDQWAEITNARDRDHFWELVHHLDPKAAACNYGQLAKYADWRFASVP
FT                   PVYESPGGISFIGGDVDGRDAWCEQSHIRSGEPLPGRCMSLVLYGDSRSGKTLWARSLG
FT                   THLYTVGMVSGEELKKASNDDVKYAIFDDIRGGIKFFPAFKEWLGAQAYVTVKELYREP
FT                   KLVKWGKPSIWISNDDPRLGMDASDVSWLEHNCYFVEVSSPIFRANTE"
XX
SQ   Sequence 2220 BP; 586 A; 633 C; 555 G; 446 T; 0 other;
     tattatacgg caggacacag ggcacaccca ggatataagt atccccacct cccccctcgg        60
     gaccgagctc ggtcccagac atgacacaac cgaccaatag cgaaaatgcc tcgcgccaca       120
     cggacctcgg atcgcttagg ccgcggacga aggagatcca cccgaaggtc atcccggcgc       180
     tccgtcgcga agaggccacc ttatcgcaaa tatttgcgca aaatgagcaa gcgcaggatc       240
     ctcaacatca cgtcgacgaa aaagaaagac acgatgacag gatacacgaa cagcactccg       300
     gccaaccaga cgggcgggac agtgtacagc actgaccctg cgatcgttac tggcggcctc       360
     aacgcgaatc aatgcaacgc gtttttgtgg tgcgccacag cccgcaccaa ccaggtcatc       420
     aaccccactc aaaacacgct agtcccaggc aacaagttct acaccgcttg ccgcacggac       480
     tccaacccat acatggtcgg cttgtcggag aagatcgaaa tccaatgcaa cagcggcatg       540
     ccatggcaat ggcgacggat atgctggacg cagaaagggg gccaaggact ccctgcgaac       600
     tctaccagct tcaacctttc gcagcagaat gcaattacgg gatggaatcg cgtcatgaat       660
     caggttgcgg gaaatcccgg cactggtgac caatacaacc ttttccatca catttttaga       720
     ggccaagtgg gtagtgattg ggtggacgtc atgaccgccc cactggaccc acaacatatc       780
     accgtcaaat atgacaaggt ggtaacacta gcgagtggca acgaggaagg gttcattcgt       840
     gcttaccgca ggtggcaccc aatgaagaag accctgtctt acgcagacga ggaatacggg       900
     aacgtagaga atgcggatgc cttcagtcaa gttggcaaga aaggaatggg cgactactat       960
     gtgcttgatt tgtttagggc gcgacagggc gcacagacaa atgactcaat ttcgattaga      1020
     ccgtgcgcta ctctgtattg gcacgaaaaa taggactaga cacctccaca aaataacaat      1080
     tgtgctccaa ccacgacacg tcacttgcat ccatgccgag acgtggatca tcatttgaaa      1140
     tccaaatgct tggtttaccc catttgacta gcttcggctc acggtagagt tccttgacag      1200
     tgacgtaagc ttgtgcacct aaccactctt tgaacgcggg gaagaacttg attcccccac      1260
     gtatatcgtc aaatatagca tacttgacgt catcgttcga agcttttttc agctcctctc      1320
     cggaaaccat tccgacggtg tacagatgag taccgaggga tctagcccac agggttttcc      1380
     cgcttctcga atctccgtac agcaccagag acatacatct acctggctta gtcagcatga      1440
     gtcggacaaa aaccccctag tacatctatg aaagggcggc ctcgaggccc gaccccatgg      1500
     ggggggggcc ctcatgaggg agggtaccgg cccaaggccg gtgggacccc ccgatatgcc      1560
     ccccaggggg aggtagccga cggccaagac tcacctacga gtggttctcc agagcgtatg      1620
     tgagattgct cgcaccacgc atctcgacca tcaacatctc caccaataaa cgagattcct      1680
     cctggtgact catacacggg aggaactgat gcaaaccgcc aatcggcgta tttggccaat      1740
     tgcccgtagt tgcaagcagc agccttggga tccaggtgat gaaccagttc ccaaaaatgg      1800
     tctcgatcgc gcgcattcgt gatttcagcc cattgatccc aatccttctt aactcgttct      1860
     gagcgaggct gctcgggtcg ttcgagcccc ccgcatatga cgtcaccatc cttgatcgca      1920
     tagtcgtaac ctctccatgg agttccccaa gaaggctcga tgtttgggtg acgaccgtcg      1980
     acatcaaaga tatcagttcg tcggcttcgg aacttccgtc cgaaatcgat gaagcaatgg      2040
     agatgaacac ctccatcctg gtgaatttct cgggcgatga tgcactcagc tcccaatcca      2100
     gaaaagtggt ccataacccg gaatccatcg agggcatcgc actgggcata cgtaatcaaa      2160
     gcgtatcggg cgttgaagta gaatggcatt tgtgtccaag tgtcctgccg tgaaaactaa      2220
//