Dbfetch
ID JQ412056; SV 1; circular; genomic DNA; STD; VRL; 2220 BP. XX AC JQ412056; XX DT 11-APR-2012 (Rel. 112, Created) DT 09-JUN-2017 (Rel. 133, Last updated, Version 3) XX DE Cassava associated gemycircularvirus 1 isolate G14, complete genome. XX KW . XX OS Cassava associated gemycircularvirus 1 OC Viruses; Genomoviridae; Gemycircularvirus. XX RN [1] RP 1-2220 RX PUBMED; 22465471. RA Dayaram A., Opong A., Jaschke A., Hadfield J., Baschiera M., Dobson R.C., RA Offei S.K., Shepherd D.N., Martin D.P., Varsani A.; RT "Molecular characterisation of a novel cassava associated circular ssDNA RT virus"; RL Virus Res. 166(1-2):130-135(2012). XX RN [2] RP 1-2220 RA Varsani A., Dayaram A., Opong A., Jaeschke A., Hadfield J., Baschiera M., RA Shepherd D.N., Dobson R.C.J., Offei S.K., Martin D.P.; RT ; RL Submitted (16-JAN-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; 01974dd9acbdbc820a0325b75f21e703. DR EuropePMC; PMC5399927; 28458911. XX FH Key Location/Qualifiers FH FT source 1..2220 FT /organism="Cassava associated gemycircularvirus 1" FT /host="cassava" FT /isolate="G14" FT /mol_type="genomic DNA" FT /country="Ghana" FT /lat_lon="7.76 N 0.69 W" FT /collection_date="2010" FT /db_xref="taxon:1985374" FT CDS 106..1053 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:I0AY94" FT /protein_id="AFH54229.1" FT /translation="MPRATRTSDRLGRGRRRSTRRSSRRSVAKRPPYRKYLRKMSKRRI FT LNITSTKKKDTMTGYTNSTPANQTGGTVYSTDPAIVTGGLNANQCNAFLWCATARTNQV FT INPTQNTLVPGNKFYTACRTDSNPYMVGLSEKIEIQCNSGMPWQWRRICWTQKGGQGLP FT ANSTSFNLSQQNAITGWNRVMNQVAGNPGTGDQYNLFHHIFRGQVGSDWVDVMTAPLDP FT QHITVKYDKVVTLASGNEEGFIRAYRRWHPMKKTLSYADEEYGNVENADAFSQVGKKGM FT GDYYVLDLFRARQGAQTNDSISIRPCATLYWHEK" FT CDS complement(join(1028..1426,1599..2189)) FT /codon_start=1 FT /product="replication-associated protein" FT /db_xref="GOA:I0AY93" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I0AY93" FT /protein_id="AFH54230.1" FT /translation="MPFYFNARYALITYAQCDALDGFRVMDHFSGLGAECIIAREIHQD FT GGVHLHCFIDFGRKFRSRRTDIFDVDGRHPNIEPSWGTPWRGYDYAIKDGDVICGGLER FT PEQPRSERVKKDWDQWAEITNARDRDHFWELVHHLDPKAAACNYGQLAKYADWRFASVP FT PVYESPGGISFIGGDVDGRDAWCEQSHIRSGQPLPGRCMSLVLYGDSRTGKTLWARSLG FT THLYTVGMVSGEELKKASNDDVKYAIFDDIRGGIKFFPAFKEWLGAQAYVTVKELYREP FT KLVKWGKPSIWISNDDPRLGMDASDVSWLEHNCYFVEVSSPIFRANTE" XX SQ Sequence 2220 BP; 585 A; 635 C; 557 G; 443 T; 0 other; tattatacgg caggacacag ggcacaccca ggatataagt atccccacct cccccctcgg 60 gaccgagctc ggtcccagac atgacacaac cgaccaatag cgaaaatgcc tcgcgccaca 120 cggacctcgg atcgcttagg ccgcggacga aggagatcca cccgaaggtc atcccggcgc 180 tccgtcgcga agaggccacc ttatcgcaaa tatttgcgca aaatgagcaa gcgcaggatc 240 ctcaacatca cgtcgacgaa aaagaaagac acgatgacag gatacacgaa cagcaccccg 300 gccaaccaga cgggcgggac agtgtatagc actgaccctg cgatcgttac tggcggcctc 360 aacgcgaatc aatgcaacgc gtttttgtgg tgcgccacag cccgcaccaa tcaggtcatc 420 aaccccaccc aaaacacgct agtcccaggc aacaagttct acaccgcttg ccgcacggac 480 tccaacccat acatggtcgg cttgtcggag aagatcgaaa tccaatgcaa cagcggcatg 540 ccatggcaat ggcgacggat atgctggacg cagaaagggg gccaaggact ccctgcgaac 600 tctaccagct tcaacctttc gcagcagaat gcaattacgg gatggaatcg cgtcatgaat 660 caggttgcgg gaaatcccgg cacgggtgac caatacaatc tctttcatca catttttaga 720 ggccaagtgg gcagtgattg ggtggacgtc atgaccgccc cactggaccc acaacatatc 780 accgtcaaat atgacaaggt ggtaacacta gcgagtggca acgaggaagg gttcatccgt 840 gcttaccgca ggtggcaccc aatgaagaag accctgtctt acgcagacga ggaatacggg 900 aacgtagaga atgcggatgc cttcagtcaa gttggcaaga aaggaatggg cgactactat 960 gtgcttgatt tgtttagggc gcgacagggc gcacagacaa atgactcaat ttcgattaga 1020 ccgtgcgcta ctctgtattg gcacgaaaaa taggactaga cacctccaca aaataacaat 1080 tgtgctccaa ccacgacacg tcactcgcat ccatgccgag acgtggatca tcatttgaaa 1140 tccaaatgct tggtttaccc catttgacta gcttcggctc acggtagagt tccttgacag 1200 tgacgtaagc ttgtgcacct aaccactctt tgaacgcggg gaagaacttg attcccccac 1260 gtatatcgtc aaatatagca tacttgacgt catcgttcga agctttcttt agctcctctc 1320 cggaaaccat tccgacggtg tacagatgag taccgaggga tctagcccac agggttttcc 1380 cggttctcga atctccgtac agcaccagag acatacatct acctggctta gtcagcatga 1440 gtcggacaaa aaccccctag catatctatg acagggcggc ctcgaggccc gaccccgtgg 1500 ggggggggcc ctcatgaggg agggtaccgg cccaaggccg gtgggacccc ccgatatgcc 1560 ccccaggggg aggtagccga cggccaagac tcacctacga gtggttgtcc agagcgtatg 1620 tgagattgct cgcaccacgc atctcgacca tcaacatctc caccaataaa cgagattcct 1680 cctggtgact catacacggg aggaactgat gcaaaccgcc aatcggcgta tttggccaat 1740 tgcccgtaat tgcaagcagc agccttggga tccaggtgat gaaccagttc ccaaaaatgg 1800 tctcgatcgc gcgcattcgt gatttcagcc cattgatccc aatccttctt aactcgttct 1860 gagcgaggct gctcgggtcg ttcgagcccc ccgcatatga cgtcaccatc cttgatcgca 1920 tagtcgtaac ctctccatgg agttccccaa gaaggctcga tgtttgggtg acgaccgtcg 1980 acatcaaaga tatcagttcg tcggcttcgg aacttccgtc cgaaatcgat gaagcaatgg 2040 agatgaacac ctccatcctg gtgaatttct cgggcgatga tgcactcagc tcccaatcca 2100 gaaaagtggt ccataacccg gaatccatcg agggcatcgc actgggcata cgtaatcaaa 2160 gcgtatcgtg cgttgaagta gaatggcatc tgtgtccaag tgtcctgccg tgaaaactaa 2220 //