ID JQ411026; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC JQ411026; XX DT 03-MAY-2012 (Rel. 112, Created) DT 26-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Radish leaf curl virus-Hajipur [IN:LabIso:11] segment DNA-A, complete DE sequence. XX KW . XX OS Radish leaf curl virus-Hajipur [IN:LabIso:11] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RA Kumar J., Kumar J., Bhati K.K., Tuli R.; RT "Radish leaf curl virus infecting okra in India"; RL Unpublished. XX RN [2] RP 1-2755 RA Kumar J., Kumar J., Bhati K.K., Tuli R.; RT ; RL Submitted (13-JAN-2012) to the INSDC. RL Agri-Biotechnolgy, National Agri-Food Biotechnolgy Institute, C-127, RL Phase-8, Mohali, Punjab 160071, India XX DR MD5; 3bb7d17c0c6e1174537a2d445f8f13f8. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Radish leaf curl virus-Hajipur [IN:LabIso:11]" FT /segment="DNA-A" FT /host="okra" FT /isolate="IN:LabIso:11" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="Sep-2011" FT /note="lab isolate" FT /db_xref="taxon:1325580" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein/movement protein" FT /db_xref="GOA:I1VYI6" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:I1VYI6" FT /protein_id="AFI56228.1" FT /translation="MWDPLLNEFPETVHGFGCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTSRLNFDSPYVRRAAAPIVRVTKAKAWANRPMDR FT KPRMYRMYRSPDVP" FT gene 307..1080 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I1VYI7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I1VYI7" FT /protein_id="AFI56229.1" FT /translation="MSKRPADIIISTPASKVRRVSTSTAHMCAVLLPPLSASPKQKHGR FT TDPWTESPGCTGCTEVQMFRRGCEGPCKVQSLSPDMIFSIYGKVMCVSDATRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMARTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1074..1481) FT /gene="AC3" FT CDS complement(1074..1481) FT /codon_start=1 FT /gene="AC3" FT /product="ren" FT /note="replication enhancer protein" FT /db_xref="GOA:I1VYI8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I1VYI8" FT /protein_id="AFI56230.1" FT /translation="MDSRTGELITATQAESGVYIWTVKNPLYFKISQHHERPFLSNNDI FT LTIQVQFNYNLRKALGIHQCFLRIWTRLSRPHSLRLVVSSGSLRPKCLSIYITSELSVL FT IMYWSSCSCIMECIRACVYVDQSSSIKFNIY" FT gene complement(1217..1621) FT /gene="AC2" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="AC2" FT /product="trap" FT /note="transactivator protein" FT /db_xref="UniProtKB/TrEMBL:I1VYI9" FT /protein_id="AFI56231.1" FT /translation="MQNSSPSPSRCTQVPIKVQHRIAKKRPVRIRSSLRLLLLFWTCLR FT ITWIHAQGNSSLQLRQRVACIFGRSKIPSISRYPNTTRDHFYPTTTYSPYKSSSTTTCG FT KRWGYTSVFYESGLVCLDLTASDWSFLPGL" FT gene complement(1530..2609) FT /gene="AC1" FT CDS complement(1530..2609) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:I1VYJ0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I1VYJ0" FT /protein_id="AFI56232.1" FT /translation="MAPPKQFQIYAKNYFLTYPKCSLTKEEALSQLQNLQTPVNKKYIK FT ICRELHENGEPHLRVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDTLDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRIIKELAPKDYVLQFH FT NLNANLDRIYTPPLEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARANRPISVVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYKRHCDVDPHYLKHFKEFMGAQRDW FT QATQSTGSPCKIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWALKNAEFFTLTEPL FT YSGTHQSPAQNSQEETSSH" FT gene complement(2150..2458) FT /gene="AC4" FT CDS complement(2150..2458) FT /codon_start=1 FT /gene="AC4" FT /product="transcriptional regulator protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I1VYJ1" FT /protein_id="AFI56233.1" FT /translation="MKMGNLIFACSSSSKANTSAKITDSSTSYPQPGQHISIRTFRELN FT QAPMSSPIWRRTETPSTGESFRSTDDLLEGDNRQPTTLTPQRLTQAVSQRLLESLRS" XX SQ Sequence 2755 BP; 734 A; 554 C; 652 G; 815 T; 0 other; accggatggc cgcgattttt tttgtggccc ccacaaagca ctaactgaca atgacatgtg 60 gtccaatgtg aatcgttcct cgtagcctaa ttgtttgtgt ggtcccctct ataaacttag 120 tgcgcaagtt gtgttttcca ttcaatatgt gggatccgtt attgaatgag tttcccgaaa 180 ccgttcacgg ttttgggtgt atgttagcag ttaaatatct gcagttagta gaaaatacgt 240 attccccaga tactctggga tacgatttaa ttagggattt gatttcagta ataagggcca 300 ggaattatgt cgaagcgacc agcagatata atcatttcca cgcccgcttc gaaggtacgt 360 cgcgtctcaa cttcgacagc ccatatgtgc gccgtgctgc tgcccccatt gtccgcgtca 420 ccaaagcaaa agcatgggcg aacagaccca tggacagaaa gcccaggatg tacaggatgt 480 acagaagtcc agatgttccg tagaggatgt gaaggcccat gtaaggttca gtccttgagt 540 ccagacatga tattcagcat atacggtaaa gtcatgtgtg tcagtgatgc tactcgtgga 600 actgggctta cccatagagt gggtaagaga ttttgtgtga agtctgtgta tgttttgggt 660 aagatatgga tggatgagaa cattaagacc aagaatcaca cgaatagtgt gatgtttttc 720 ttagttagag atcgtagacc agttgataaa cctcaagatt ttggagaggt gtttaacatg 780 tttgataatg agcccagtac ggcgactgtg aagaatgttc atcgtgatag gtatcaagtg 840 ctgcgcaaat ggtatgcaac tgtcaccggt ggacaatacg cttcaaagga acaagctctc 900 gtgaagaagt ttattagggt taataattat gttgtgtata accagcaaga agctggcaag 960 tatgagaatc attctgagaa tgctttaatg ttgtatatgg cgcgtactca cgcctctaac 1020 ccagtgtatg ctactttgaa aatacggatc tacttctatg attccgtgac aaattaataa 1080 atattgaatt ttattgaaga tgattggtct acatatacac atgctctaat acattccata 1140 atacatgagc aactgctcca atacattatt aatactgaca attccgaagt tatgtaaata 1200 cttaagcact tgggtcttaa agacccggaa gaaacgacca atcggaggct gtgaggtcga 1260 gacagacgag tccagattcg tagaaaacac tggtgtatcc ccaacgcttt ccgcaggttg 1320 tagttgaact ggacttgtat ggtgagtatg tcgttgttgg atagaaatgg tctctcgtgg 1380 tgttgggata tcttgaaata gaggggattt ttgaccgtcc aaatatacac gccactctct 1440 gcctgagttg cagtgatgag ttcccctgtg cgtgaatcca tgtgatgcgc aggcaagtcc 1500 aaaatagtaa gagcaaccgc agggaagatc taatgcgaac tggtctcttc ttggctattc 1560 tgtgctggac tttgatgggt acctgagtac aacggctcgg tgagggtgaa gaattctgca 1620 ttctttaatg cccagtcttt tagtgctgaa ttcttttcct catccaagta ctctttatat 1680 gatgatgtcg ggcctggatt gcagaggaag atagtgggaa tcccaccttt aattttgcat 1740 gggcttcccg tactttgtgt tgcttgccag tccctttggg cccccatgaa ctccttaaag 1800 tgctttagat agtggggatc gacgtcacaa tgacgtttgt accaggcatc attactgtac 1860 acctttggac tcaggtcaag gtgaccacat aaatagttat gtggacccag agacctagcc 1920 cacattgtct tccctgtcct actatcaccc tcaatcacta cacttattgg tctattggcc 1980 cgcgcagcgg cactgacgac gttctcggca gcccattcct caagttcttc cggaacttga 2040 tcaaaagaag aagaagaaaa aggagaaaca taaacctcca gaggaggtgt ataaatccta 2100 tctaaattag catttaaatt atggaattgt aatacataat cttttggagc taactcctta 2160 atgattctaa gagcctctga cttactgcct gcgttaagcg ctgcggcgta agcgtcgttg 2220 gctgtctgtt gtccccctct agcagatcgt ccgtcgatct gaaactctcc ccagtcgagg 2280 gtgtctccgt ccttctccat ataggacttg acatcggagc ttgatttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctggttggg gatacgaggt cgaagaatct gttatttttg 2400 cacttgtatt tgccttcgaa ctggatgagc acgcgaagat gaggttcccc attttcatga 2460 agctctctgc agattttaat gtattttttg tttactgggg tttgtaggtt ttgtagttgg 2520 gaaagtgctt cctctttagt aagggagcat ttgggataag taaggaaata atttttggca 2580 tatatctgaa attgtttggg aggagccatt gacttggtca atcggtaccc agaactagtc 2640 ttatggcaat tggtgaacgg taccctatat atagtgggta ctgaatggca atatttgtaa 2700 ttatgaaaga aattcaaaat cctcacgctc caatcgcggc catccgtata atatt 2755 //