ID JQ394882; SV 1; linear; genomic RNA; STD; VRL; 6314 BP. XX AC JQ394882; XX DT 23-DEC-2012 (Rel. 115, Created) DT 23-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Potato virus T isolate PER17 replicase, movement protein, and coat protein DE genes, complete cds. XX KW . XX OS Potato virus T OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Tepovirus. XX RN [1] RP 1-6314 RA Silvestre R., Cuellar W.; RT "Sequence variability among PVT isolates"; RL Unpublished. XX RN [2] RP 1-6314 RA Silvestre R., Cuellar W.; RT ; RL Submitted (10-JAN-2012) to the INSDC. RL Crop Management and Production Systems Division, International Potato RL Center, La Molina 1895, Lima 12, Peru XX DR MD5; 30273de91b7f0a7d2e482239b317bf05. DR EuropePMC; PMC6256546; 30533781. XX FH Key Location/Qualifiers FH FT source 1..6314 FT /organism="Potato virus T" FT /host="Solanum andigenum" FT /isolate="PER17" FT /mol_type="genomic RNA" FT /country="Peru" FT /db_xref="taxon:36403" FT CDS 31..4854 FT /codon_start=1 FT /product="replicase" FT /note="contains methyltransferase domain, RNA helicase, and FT RNA dependent RNA polymerase domains" FT /db_xref="GOA:K9MM00" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K9MM00" FT /protein_id="AFV39891.1" FT /translation="MSFSFRTPAELFVQSLPKEYAEACFKSHAANFQIRSDKGIGLFDF FT ACSSVVKERLTKAGIPVSAFCNQEHSHPASKMIENHFLYNILPNYLNLKNYTAISIKDS FT KVRKLLKNGVDSLETFNRLVSCKDALRYVDPETCDMDKFIARVHHSTRIFLFDELHYWS FT MNSLSDFLDRSNVKELLATIVFPVEVLLGSKRSLNPELYEFEISRGKLHFFPDGCTSES FT YSQPKDCDILKVNRIVTKTGKIFSVELIHTIGANHMVMIKEGSFDVDSERFFDRSSALT FT TSLLMPTRAGKALRIRRKFLLRLIIYLFSLKKPDHHSAIAKIRQSSDDSIFCDEIMLAD FT HVGKIFEKLDPASPFGVKGVFDLLTGIFKDIFLLDGLFNWSDRRKSEKFVEFMRALDYQ FT TNKVVTCTFSGGIMRSGFLAEFFLDNDCEASEGLDEVISRFDTFFDPKKEYSAHALRVN FT IKDRASSPYGPMKARTPSVVLHREYITKVELSSKAKKVNVLEERLTGEVSFEEARLQRM FT WYSDSQFVTGLVPKLRYVKMLTWKEDQKLFSEFPSEESDEVEMEDAFECEEKENSEEEG FT PKERNENGANSEEYEQLDSEDDVGSFEYEETKADSYEIDFEAILNRVNSGGLRGVCLLD FT ALAKITGTKREITLSILLGRDGTWADWFLKDKGATFDDVFKAVSDLDLNCTICTKEGSF FT NAHVNRNYKHNFLYLFDEHVSLERPKVMLFEQVRHQKIDFLGAFEKCPGAGKFRYEALA FT ERGSLLASALKDNLTGVISSKFNWDPKCEFVDIEKEILVVAGFAGSGKTRGICQIVKSM FT FNNKKTLVLSPRKNLADDWVKNLANLHRPSHVKVMTFEAGLRRVQKSSLIVIDELSLMP FT NGYLDMLINMNEEATFITLFDPLQARYHAKSDVLRVSPENDVDRIKVPKYLFFSKRMSS FT ELDFFDIRCSSDQKKWELHGKQYREPAALFRDIKGQEFTILSPSFETAREMSKYADIKD FT GCKSMTFGESQGLTVNKAVIVVDQDLVATSVLHWIVALTRSRQGFVILVHKVFDMKTLI FT QPVQNSIIGLVLRGIKVSREHLINTAGKCLSEAEIVEELETFKRTEDDEDLLEGDPWLK FT GQLFLCQSVELDEVTPEEPLRHESPPRTHLPLPVEGLTPLLMSNVKAREDREFITPSGW FT SKQFRDDKENVDWRNVSYADAFETIYPKHEASDDITLWAAIQKRIVMADPFRNAMKLQK FT VEPISAEIFNEMNKILLLNPHVSVDRDQVYKEFLRKRLNKSKKLIESHSERSSDDWPID FT HFFLFMKSQLCTKFEKRFVDAKAGQTLACFSHKLLTRFGPAFREFEKKFTANLPPSWYI FT HTMKNFDQLNNWVINYVDQEEGTESDYEAFDRSQDAIILGLEIECLKLFGWDQDLIDDY FT RKLKLWMGCRLGAIAIMRFTGEFGTFFFNTIANIAFTCLRYNITRDTVIAFAGDDMYAS FT GKLEIRKDREDLLAHLTLKAKVQFTEKPMFCGWYIKKMGIVKEPRLVLERWLIAERKKV FT IDQCFINYSIEVSYGYRLGEYLWEYFDNLEDFQAIVRLVIKKKKQLPPAIRRIFETSNG FT VDFSGEVQETMGGEGEHHGSCGLWCNLH" FT CDS 4763..5839 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:K9ML21" FT /protein_id="AFV39890.1" FT /translation="MELISVEKFRRQWEERESITGPVDSGAIYTNSAFHNLKTKWHVYK FT SECSIGLDLPDNGKIISKDIPLFDQEEIDNIMRDDKQVFVHLGAFVFGLVAHFPVDEEV FT EGLVSIIDKRRTDLRRATLACRKIKFVNGRCAFMMKPNFSVRKEDLRDGDTFCAAIKIK FT NLGFEGEFFPFSACGGVIYRTSNVSFAHAVDKTFASRTVHDLVGTDILSLDQLDQATLE FT DLEEVRRSPILGLTAPDERVMIERGSWFQKKPAIRRRSFGKRRPQKSSSVRSASLPRFS FT CSERLERGFESESLAGLVLDQKYGPNNFCADKRRSPESDSGSLQQSMGQSSHSGSEGWG FT KGTDVAIPLRKNRNIFSE" FT CDS 5673..6314 FT /codon_start=1 FT /product="coat protein" FT /note="viral capsid" FT /db_xref="GOA:K9MLU3" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:K9MLU3" FT /protein_id="AFV39889.1" FT /translation="MDPTTFVQIRDEVLNLTVAAYSSQWDSQATQALKDGAKEQMLRFL FT FGRIAISSASRNTIWPDTEIASEDLQIGMSAASAGPPPVAAAPISLIFRVNFNSYVKML FT IALSNTSTNSFVKNKTLRQMCMPFAKYAYGYLSEMGYATWAYEKMPKLCRKAKWVAFDF FT ASGLLIDTTMQLNDDEKTVIQGLGARLFKTQQSIQIADSTMDGEAINREI" XX SQ Sequence 6314 BP; 1949 A; 1098 C; 1521 G; 1746 T; 0 other; tcaaaagaca ctaattgtct acaattaaaa atgtctttct ccttcaggac gccagcagaa 60 cttttcgttc agtctttgcc taaagaatat gcagaagcat gttttaaatc tcatgcagcc 120 aatttccaga tccgatccga taagggaatt ggcttatttg attttgcatg ttcttctgtg 180 gtcaaggaaa gactcactaa ggccggtata cccgtttctg ccttttgcaa tcaagagcat 240 tctcaccccg catccaagat gattgaaaac catttcctgt acaatatttt acctaattac 300 ctgaacctta agaattacac cgcaatttca attaaggatt ccaaagttag aaagttattg 360 aagaatggtg tagatagttt agaaactttc aatagattag ttagctgtaa agatgctttg 420 agatatgtag accctgaaac ttgtgacatg gataaattca tagctagggt tcatcattca 480 actaggatat ttctatttga tgagctccat tactggtcca tgaactccct atctgacttt 540 ttggataggt ctaatgtcaa agagctgttg gccactatag tttttcccgt tgaagttctg 600 ctcgggtcaa agaggagttt gaatccagaa ctctatgaat tcgagatttc aaggggaaag 660 ttacatttct ttccagatgg ttgcacatca gagtcctatt cacaaccaaa agattgtgat 720 atcttgaagg tgaacagaat tgtgactaag actggaaaga tcttctcagt tgagcttatt 780 cacaccattg gggccaacca catggtgatg ataaaagaag gttcctttga tgttgactca 840 gaaaggttct ttgatagatc ctcagctttg accactagtc ttctaatgcc tactagagca 900 ggtaaggccc ttagaatcag aaggaagttt cttttgagat tgataattta cctgttttca 960 ctgaaaaaac ctgatcatca ctctgcaatc gccaagatca gacaaagctc agatgactct 1020 atcttttgtg atgagataat gttggcggac catgttggca agatattcga gaagttggat 1080 cctgccagtc cttttggagt caaaggggtc tttgatttgt taacaggtat tttcaaagat 1140 attttccttc tcgatggtct cttcaattgg tctgatagaa ggaaatctga gaagtttgta 1200 gaattcatga gagctttgga ttaccagact aacaaggttg tcacctgtac tttttcgggt 1260 ggaatcatga ggagtggctt cttagcggaa ttcttcttgg acaacgattg cgaagcgagt 1320 gaagggctgg atgaagtaat ttcaaggttc gacactttct ttgacccaaa aaaagaatat 1380 tcagcacatg ctttgagggt gaacatcaag gacagggcat caagcccata tggtccaatg 1440 aaggcaagaa ctccaagtgt cgtactacat agagagtaca taacgaaggt tgagctctct 1500 agcaaagcga agaaggtcaa tgtcttagaa gagaggttga ctggagaggt gtcttttgag 1560 gaggccaggt tgcagagaat gtggtactcc gattctcaat ttgttactgg gctggtgccg 1620 aaactgagat atgtcaaaat gttgacatgg aaagaagatc agaagctgtt cagtgaattc 1680 ccctcagaag agtcggacga agttgagatg gaggatgcat ttgaatgtga ggaaaaggag 1740 aactctgaag aagagggccc aaaagagagg aatgagaatg gagcaaattc tgaagagtat 1800 gagcagctgg attcagaaga tgatgttggt tcttttgagt atgaggaaac aaaggctgat 1860 tcctatgaga ttgactttga ggcaattttg aatagagtta actcaggagg tcttcgaggt 1920 gtttgcttat tggatgcctt agcaaaaata actgggacaa aaagagagat caccctctct 1980 attcttctag ggagggatgg cacttgggcc gattggtttc tgaaggacaa gggcgccact 2040 tttgatgatg tcttcaaagc agtctcagat cttgatctaa attgtacaat atgcacgaaa 2100 gagggctcat tcaatgcaca tgtgaatagg aattataagc ataacttcct ttatctattt 2160 gatgagcatg ttagcctgga gagaccaaaa gtcatgctct ttgaacaggt gagacatcaa 2220 aagatagatt ttttgggtgc ctttgaaaag tgtcctgggg ctggtaagtt ccgctacgag 2280 gcgttagctg agagaggaag tctgctagct tctgctttga aagataatct cactggagtt 2340 atttcaagca aattcaattg ggaccccaaa tgtgaatttg tagatattga aaaggaaatt 2400 cttgttgtgg ctggctttgc aggttctgga aagactcgag gcatatgtca aatcgtcaag 2460 agcatgttca acaataagaa aactcttgtt cttagtccaa ggaagaatct agcggatgat 2520 tgggttaaga acttggccaa tttgcacagg ccaagtcatg tgaaggtgat gacatttgaa 2580 gctggtttga ggcgagtaca gaagtcttct ctaatcgtga tagatgagtt atctttgatg 2640 ccgaacggtt atctagatat gctcataaat atgaatgagg aggccacatt catcacactc 2700 tttgatccac tgcaggctag ataccatgca aaaagtgatg tgctcagggt gagccctgaa 2760 aatgacgttg acagaataaa ggtgccgaaa tacctcttct tttcgaagag aatgagttca 2820 gagctagatt tctttgatat tagatgctca tctgatcaaa agaaatggga acttcatgga 2880 aagcaatatc gtgagccagc tgcactgttc agagatatca aaggtcagga attcacaata 2940 ctatcaccat catttgagac tgctagagaa atgtccaagt atgcagatat caaggatggg 3000 tgcaaatcaa tgacctttgg tgaatcacaa ggtctaacag tcaacaaggc agttattgta 3060 gttgaccaag atctggttgc aacatcagtg ttacattgga tagttgcatt aactaggagc 3120 agacagggtt ttgttatact ggtgcacaaa gtctttgaca tgaaaacact gattcaacct 3180 gttcagaatt ctataattgg tcttgtgcta agagggatca aggtttcaag agaacatctt 3240 atcaacacag ctggaaagtg tctgtctgaa gcagaaatag tagaggagct ggagaccttc 3300 aaaaggacag aagatgatga agacctactc gaaggtgacc cttggttaaa gggtcagctc 3360 tttctttgtc aaagtgttga attggatgaa gttacacctg aggaaccatt gaggcatgag 3420 agcccaccta ggacacattt acctctcccg gttgaaggat taacaccgct tttgatgtcg 3480 aatgttaaag caagagagga tagagagttc ataactccaa gcggatggag caaacaattc 3540 agggatgata aagaaaatgt ggactggaga aatgtctcat atgctgatgc tttcgagaca 3600 atttatccga aacatgaggc aagtgatgac ataaccctat gggccgccat ccagaagagg 3660 atcgtgatgg cagatccatt cagaaatgca atgaagttgc aaaaagtgga accaatctca 3720 gctgagattt tcaatgaaat gaacaaaata cttctcttga atccacatgt gagtgttgat 3780 agggatcagg tctacaaaga gttcttgaga aagaggttaa ataagtcaaa gaagttgata 3840 gaatcccact ctgaaaggtc atctgatgat tggccaatag atcacttctt cctgtttatg 3900 aagagccagc tatgcacaaa gtttgagaag aggtttgtgg atgcaaaggc tggtcaaacg 3960 ctggcttgtt tctcacacaa gttattgaca agattcggac ctgcctttag agagtttgaa 4020 aagaagttca cagcaaattt gccgccatca tggtacattc acacaatgaa gaatttcgat 4080 caactgaaca attgggtcat taactacgtt gatcaagaag agggcactga atctgattat 4140 gaagctttcg acagatcaca ggatgctatc attctaggtc ttgaaataga atgtctgaaa 4200 ttgtttggat gggatcaaga cctgatagat gattacagaa agctgaagct ctggatggga 4260 tgtagattgg gggcaattgc aattatgcga ttcacgggtg aatttggaac attctttttc 4320 aacacaattg caaacatcgc attcacatgc ttgaggtata atatcactag agacactgtg 4380 attgcgtttg caggagatga catgtatgca tccggaaaac tcgaaatcag gaaggataga 4440 gaagacctgc tggcccatct aactttaaag gcaaaagtgc agttcacaga aaagccaatg 4500 ttctgtgggt ggtacatcaa gaagatggga attgtgaagg agccaagatt ggtgcttgaa 4560 aggtggttaa tagctgaaag gaagaaggtg atagatcaat gcttcatcaa ctactcaatc 4620 gaggtatctt atggatacag attaggtgag tacctctggg agtattttga taatttagag 4680 gatttccaag caatagtgag attggtgata aagaagaaga agcaattgcc accagctata 4740 agaagaattt ttgagacaag taatggagtt gatttcagtg gagaagttca ggagacaatg 4800 ggaggagagg gagagcatca cgggtcctgt ggactctggt gcaatctaca ctaactctgc 4860 gtttcacaat ctgaagacca aatggcacgt ttacaagtct gagtgcagta ttggtcttga 4920 tttgcccgat aatggaaaaa taatatcaaa ggacatcccc ctctttgatc aagaggaaat 4980 tgataacatc atgagagacg acaaacaggt attcgtccat ctgggagcct ttgtatttgg 5040 acttgttgca cactttcctg tcgatgagga agtggaagga ttagtttcta tcattgacaa 5100 acgtcggact gatctgagga gggcaaccct agcttgcaga aaaattaaat ttgtaaatgg 5160 aagatgcgct ttcatgatga agccaaactt ttcagtcagg aaggaggatt taagggacgg 5220 tgacactttt tgtgccgcca tcaaaatcaa aaaccttggc tttgaaggtg agttctttcc 5280 attttcagca tgtggcggag tgatttacag aacctcaaat gtgagttttg cacatgctgt 5340 tgacaaaacc tttgcttcta ggactgttca tgatttggtg ggtactgata tactctcttt 5400 ggatcaactg gaccaagcca ctctggagga ccttgaggaa gtgagaagaa gccccattct 5460 agggttaacc gctcctgacg agagagtaat gatagaaaga gggagttggt tccagaaaaa 5520 accggcaata aggaggagaa gttttgggaa gaggaggccc caaaaaagtt cgtcagttag 5580 gtcggcgagt ttgcctcgat tttcatgttc tgagaggtta gaaaggggct ttgaatcaga 5640 gagtctggct ggattagtgc tagatcagaa atatggaccc aacaactttt gtgcagataa 5700 gagacgaagt cctgaatctg acagtggcag cttacagcag tcaatgggac agtcaagcca 5760 ctcaggctct gaaggatggg gcaaaggaac agatgttgcg attcctcttc ggaagaatcg 5820 caatatcttc agcgagtaga aacaccatct ggcctgatac ggagatcgca tcggaggatc 5880 ttcagatagg tatgtcagcg gcttcagcgg gtccacctcc agtggctgct gctccgataa 5940 gccttatatt tagggtaaat tttaattctt atgtcaaaat gctaatagct ttgtccaaca 6000 cttcaacaaa ttcctttgta aagaataaaa cactcagaca aatgtgtatg ccttttgcaa 6060 aatatgctta tggatactta tctgaaatgg gctatgcaac ttgggcatat gagaaaatgc 6120 ccaaactttg tcgaaaggct aaatgggttg ctttcgattt tgcatctggg ttgttgattg 6180 atacaacaat gcagttaaat gatgatgaaa agaccgtcat tcaaggtctg ggagctaggc 6240 tatttaaaac tcaacagtcc attcaaattg ctgattccac aatggacggt gaagctatca 6300 atcgtgaaat ttga 6314 //