ID   JQ361110; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   JQ361110;
XX
DT   25-APR-2012 (Rel. 112, Created)
DT   25-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Lily mottle virus isolate LMoV-SD HC protein gene, partial cds.
XX
KW   .
XX
OS   Lily mottle virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Wang L., Kong B., Chen H.;
RT   "Detection of Lily mottle virus in Lily by RT-PCR";
RL   Unpublished.
XX
RN   [2]
RP   1-1374
RA   Wang L., Kong B., Chen H.;
RT   ;
RL   Submitted (05-JAN-2012) to the INSDC.
RL   Department of Phytopathology, Yunnan Agricultural University, National
RL   Center for Agricultural Biodiversity, Kunming, Yunnan Province 650201,
RL   China
XX
DR   MD5; 6c676ced202acb226e3dc74533020e47.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Lily mottle virus"
FT                   /host="Lilium lancifolium Thumb. (lily)"
FT                   /isolate="LMoV-SD"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Shandong"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:32624"
FT   CDS             <1..>1374
FT                   /codon_start=1
FT                   /product="HC protein"
FT                   /note="HC-Pro"
FT                   /db_xref="GOA:I1V5D7"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I1V5D7"
FT                   /protein_id="AFI26398.1"
FT                   /translation="SRPGDKFWAGFNSQFLRIKPKGIPHTCTSNFNVFECGQVAALMCQ
FT                   ALYPCGRITCQQCASEYLELTKVELGEKLSDGLYRTSSQIRENHQEFAHVAHILNVIAD
FT                   LLSLKNNNMEAFTEVHKLIGEQTQSPFTHLNRLNSILIKGSDMSSNELYECSDCICELA
FT                   RFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLMCDNQLDKNGNFEWGQRGYHAKRFLSN
FT                   YFEVVNTQNAYREHTLRKHPNGTRELAIGKFIVSTNFEVFRKSMEGKRIPQMPVTEACL
FT                   SQRGERFIYQCCCVTNEDGTPLESTFRMPTKNTLVLGNTGDEKFVDMPTDTDEKMYIAR
FT                   EGYCYINIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATACHTLTVFFPDT
FT                   LSAELPRILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLKSEMKHYQVG
FT                   "
XX
SQ   Sequence 1374 BP; 409 A; 332 C; 331 G; 302 T; 0 other;
     tcgcgcccag gcgataaatt ctgggcaggg ttcaactccc aattcctcag gatcaaaccc        60
     aagggaatac cacacacttg cacatcaaac ttcaatgtct tcgaatgtgg gcaggtcgcg       120
     gctcttatgt gccaagctct gtacccatgt gggagaatta catgtcagca gtgtgcgtcc       180
     gagtacctgg agctgacgaa ggttgaactc ggggaaaagc tcagcgatgg tttgtataga       240
     acaagttcgc aaattcgtga aaaccaccaa gagttcgccc atgtggcaca catactcaac       300
     gtgatagctg atcttctgag cctcaagaac aacaacatgg aggcgttcac agaggtccac       360
     aaactcatag gtgagcaaac acagtcacca ttcacacacc tcaatcgctt gaactcaata       420
     ctgatcaaag gcagcgatat gagcagcaat gagctgtatg aatgttcaga ctgcatttgt       480
     gagctagcgc gattccagaa gaacaggaca gataacatca agaaactgga cgttagcgtg       540
     tttcggaata aagcttcctc caagtcatac ttcaacctgg acttgatgtg tgacaaccaa       600
     ctcgacaaga atggaaattt cgaatggggc cagcgaggct atcatgccaa acggttctta       660
     tcgaattatt ttgaggttgt caacacacag aatgcctacc gagagcacac actgaggaag       720
     catccgaatg gcacgcgaga gctcgcaatc gggaaattta tagtgtcaac aaactttgaa       780
     gtgtttcgca agagcatgga agggaagcgc ataccacaaa tgcctgttac tgaggcttgc       840
     ctgagtcagc gtggagagcg tttcatttac cagtgctgct gtgtaacaaa cgaagatggc       900
     actccactcg agtcgacatt caggatgcca acgaagaaca cactcgtgct tgggaacacg       960
     ggtgacgaga aatttgtcga catgcccacc gacacggatg agaagatgta tatagctcga      1020
     gagggctact gctacatcaa catatttttc gccatgttaa taaacgttcg tgaaagtcaa      1080
     gcaaaggcat ttacgaagat ggtgcgagac cgcctcgtac ccgagcttgg aacatggcca      1140
     accatgatcg atgtggcaac agcatgccac acattgactg tcttcttccc agacacactg      1200
     agcgcagaac tcccgcgaat tctcgtggac cacaacacta agacgatgca tgtgattgac      1260
     tcatacggat ctgttagcac tggctaccac cagttaaagg ctaacacagt gagtcagcta      1320
     gttctctttg ctagtgacac gctgaagtca gaaatgaagc actatcaggt cggc            1374
//