Dbfetch
ID JQ354991; SV 1; circular; genomic DNA; STD; VRL; 2780 BP. XX AC JQ354991; XX DT 19-APR-2013 (Rel. 116, Created) DT 21-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato yellow leaf curl virus, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2780 RA Al-Kuwaiti N.A., Otto B., Collins C., Seal S., Maruthi M.N.; RT "Molecular characterisation and first complete genome sequence of Tomato RT yellow leaf curl virus (TYLCV) infecting tomato in Iraq"; RL New Dis. Rep. 47:0(2013). XX RN [2] RP 1-2780 RA Al-Kuwaiti N.A.; RT ; RL Submitted (04-JAN-2012) to the INSDC. RL Natural Resources Institute, University of Greenwich, Medway Campus, RL Central Avenue, Chatham Maritime, Kent ME4 4TB, United Kingdom XX DR MD5; 9806e2e0204e46c2edf43df9b425a7f4. DR EuropePMC; PMC5796946; 29430354. XX FH Key Location/Qualifiers FH FT source 1..2780 FT /organism="Tomato yellow leaf curl virus" FT /host="tomato" FT /isolate="TYLCV IRQ" FT /mol_type="genomic DNA" FT /country="Iraq" FT /lat_lon="33.31 N 44.19 E" FT /collected_by="M. A. Adhab & A. S. A-Kuwaiti" FT /collection_date="Apr-2011" FT /db_xref="taxon:10832" FT gene 156..506 FT /gene="V2" FT CDS 156..506 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:Q77PF9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77PF9" FT /protein_id="AFU54048.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT gene 316..1092 FT /gene="V1" FT CDS 316..1092 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:A1Z655" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A1Z655" FT /protein_id="AFU54049.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1089..1493) FT /gene="C3" FT CDS complement(1089..1493) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:M9NY51" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M9NY51" FT /protein_id="AFU54050.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGHFLRVFRYGVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1234..1641) FT /gene="C2" FT CDS complement(1234..1641) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activator protein" FT /db_xref="GOA:M9NYP2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M9NYP2" FT /protein_id="AFU54051.1" FT /translation="MQPSSPSTSHCTQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1550..2623) FT /gene="C1" FT CDS complement(1550..2623) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:M9NYC8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M9NYC8" FT /protein_id="AFU54052.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGIFQIDGRSARGGQQSANDAYAEALNSGNKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVIENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLYA FT SINQGPTQDSQEETNKA" FT gene complement(2179..2472) FT /gene="C4" FT CDS complement(2179..2472) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M9NYM3" FT /protein_id="AFU54053.1" FT /translation="MGNHISMCLSNSKENTNVRTNGSSTWYPQTDQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAINPRPSIY" XX SQ Sequence 2780 BP; 763 A; 530 C; 599 G; 888 T; 0 other; taaatattac cggatggccg cgccttttcc ttttatgtgg tccccacgag ggttccacag 60 atgtcactct caaccaatca aattgcatcc tcaaacgtta gataagtgtt catttgtctt 120 tatatacttg gtccccaagt attttgtctt gcaatatgtg ggacccacta ctaaatgaat 180 ttcctgaatc tgttcacgga tttcgttgta tgttagctat taaatatttg cagtccgttg 240 aggaaactta cgagcccaat acattgggcc acgatttaat tagggatctt atatctgttg 300 taagggcccg tgattatgtc gaagcgacca ggcgatataa tcatttccac gcccgtctcg 360 aaggttcgcc gaaggctgaa cttcgacagc ccatacagca gccgtgctgc tgtccccatt 420 gtccaaggca caaacaagcg acgatcatgg acgtacaggc ccatgtaccg aaagcccaga 480 atatacagaa tgtatcgaag ccctgatgtt ccccgtggat gtgaaggccc atgtaaagtc 540 cagtcttatg agcaacggga tgatattaag catactggtg ttgttcgttg tgttagtgat 600 gttactcgtg gatctggaat tactcacaga gtgggtaaga ggttctgtgt taaatcgata 660 tattttttag gtaaagtctg gatggatgaa aatatcaaga agcagaatca cactaatcag 720 gtcatgttct ttttggtccg tgatagaagg ccctatggaa gcagcccaat ggattttgga 780 caggttttta atatgttcga taatgagccc agtaccgcaa ccgtgaagaa tgatttgcgt 840 gataggtttc aagtgatgag gaaatttcat gcaacagtta ttggtgggcc ctctggaatg 900 aaggaacagg cattagttaa gagatttttt aaaattaaca gtcatgtaac ttataatcat 960 caggaggcag ccaagtacga gaaccatact gaaaacgcct tgttattgta tatggcatgt 1020 acgcatgcct ctaatccagt gtatgcaact atgaaaatac gcatctattt ctatgattca 1080 atatcaaatt aataaaattt atattttata tcatgagttt ctgttacatt tattgtgttt 1140 tcaagtacat catacaatac atgatcaact gctctgatta cattgttaat tgaaattaca 1200 ccaagactat ctaaatactt aagaactcca tatctaaata ctcttaagaa atgaccagtc 1260 tgaggctgta atgtcgtcca aattcggaag ttgagaaaac atttgtgaat ccccattacc 1320 ttcctgatgt tgtggttgaa tcttatctga atggaaatga tgtcgtggtt cattagaaat 1380 ggccgctggc tgtgttctgt tatcttgaaa tagaggggat tgtttatctc ccagataaaa 1440 acgccattct ctgcctgagg agcagtgatg agttcccctg tgcgtgaatc catgattgtt 1500 gcagttgaga tggagatagt atgagcagcc acagtctagg tctacacgct tacgccttat 1560 tggtttcttc ttggctatct tgtgttggac cttgattgat acttgcgtac agtggctcgt 1620 agagggtgac gaaggttgca ttcttgagag cccaattttt caaggatata tttttttctt 1680 cgtctagata ttccctatat gaggaggtag gtcctggatt gcataggaag atagtgggaa 1740 ttcccccttt aatttgaatg ggcttcccgt actttgtgtt gctttgccag tccctctggg 1800 cccccatgaa ttctttgaag tgctttaaat aatgcgggtc tacgtcatca atgacgttgt 1860 accacgcatc attactgtac acctttgggc ttaggtctag atgtccacat aaataattat 1920 gtgggcctag agacctggcc cacattgttt tacctgttct gctatcaccc tcaattacaa 1980 tacttatggg tctccatggc cgcgcagcgg aagacacgac gttctcaatg acccactctt 2040 caagttcatc tggaacttga ttaaaagaag aagaaagaaa tggagaaaca taaacttcta 2100 aaggaggact aaaaatccta tctaaatttg aacttaaatt atgaaattgt aaaatatagt 2160 cctttggggc cttctctttt aatatattga gggcctcgga tttattgcct gaattgagtg 2220 cttcggcata tgcgtcgttg gcagattgct gacctcctct agctgatctg ccatcgattt 2280 ggaaaattcc aaaatcaatg aagtctccgt ctttctccac gtaggtcttg acatctgttg 2340 agctcttagc tgcctgaatg ttcggatgga aatgtgctga tctgtttggg gataccaggt 2400 cgaagaaccg ttggttctta cattggtatt ttccttcgaa ttggataagc acatggagat 2460 gtggttcccc attctcgtgg aattctctgc aaactttgat gtatttttta tttgttgggg 2520 tttctaggtt ttttaattgg gaaagtgctt cctctttaga gagagaacaa ttgggatatg 2580 ttaggaaata atttttggca tatattttaa ataaacgagg catgttgaaa tgaatcggtg 2640 tctctcaaag ctctatggca atcggtgtat cggtgtctta cttatacctg gacacctaat 2700 ggctatttgg taatttcgta aaagtatatt gcaattcaaa attcaaaatt caaaaattaa 2760 atcattaaag cggccatccg 2780 //