Dbfetch
ID JQ346191; SV 1; linear; genomic RNA; STD; VRL; 5865 BP. XX AC JQ346191; XX DT 10-MAY-2012 (Rel. 112, Created) DT 10-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Potato leafroll virus isolate JokerMV10, complete genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5865 RA Huehnlein A., Schubert J., Thieme T., Zahn V., Steinbach P.; RT "Variants of PLRV with reduced symptome severity under field conditions"; RL Unpublished. XX RN [2] RP 1-5865 RA Huehnlein A., Schubert J., Thieme T., Zahn V., Steinbach P.; RT ; RL Submitted (03-JAN-2012) to the INSDC. RL Institute for Biosafety in Plant Biotechnology, Julius Kuehn Institute, RL Erwin-Baur-Str. 27, Quedlinburg 06448, Germany XX DR MD5; e3ccc92bcad1786291e0311d6c621758. DR EuropePMC; PMC4422679; 25946037. XX CC ##Assembly-Data-START## CC Assembly Method :: Lasergene v. 8.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5865 FT /organism="Potato leafroll virus" FT /host="Solanum tuberosum L." FT /isolate="JokerMV10" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="10-Sep-2010" FT /db_xref="taxon:12045" FT 5'UTR 1..53 FT gene 54..797 FT /gene="P0" FT CDS 54..797 FT /codon_start=1 FT /gene="P0" FT /product="ORF0" FT /db_xref="GOA:Q5URV4" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q5URV4" FT /protein_id="AFI93511.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLLYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPSI FT IVELDNPTTAAAYRSELLRISSSSYVKNSVGFSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRNLMGNYQHLVRSLLDACTVDYFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT gene 187..2106 FT /gene="P1" FT CDS 187..2106 FT /codon_start=1 FT /gene="P1" FT /product="polyprotein" FT /db_xref="GOA:I1XV26" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:I1XV26" FT /protein_id="AFI93512.1" FT /translation="MNRFTAFAALFFMFSLCSTAKEAGFQHPAFNFRGTSIMSVSSGDY FT SAAPTPQYKSWALPSLSNSTTPPPLLLTDRSYYELVQALMSKIRLDFQMVGDMTWRHLS FT EMLFASWNSVREVSLRAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENAWVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKHNSSPPTSTQSTS FT GAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT gene 1511..1651 FT /gene="Rap1" FT CDS 1511..1651 FT /codon_start=1 FT /gene="Rap1" FT /product="replication associated protein" FT /db_xref="UniProtKB/TrEMBL:B0FEU0" FT /protein_id="AFI93513.1" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQTQQRRLLHQLQQRKLLQQTS FT L" FT gene <1524..3374 FT /gene="P2" FT CDS <1524..3374 FT /codon_start=1 FT /gene="P2" FT /product="putative RNA polymerase" FT /note="translated by ribosomal frameshift" FT /db_xref="GOA:I1XV28" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I1XV28" FT /protein_id="AFI93514.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREEQAQQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPCYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCITNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQIAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTGSSNSRIRVMAAYHCGANWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAIPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT gene 3572..5725 FT /gene="P5" FT CDS 3572..5725 FT /codon_start=1 FT /transl_except=(pos:4196..4198,aa:OTHER) FT /gene="P5" FT /product="minor capsid protein" FT /note="read through protein" FT /db_xref="GOA:I1XV29" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1XV29" FT /protein_id="AFI93515.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVSRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSNLLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGNQRMKYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYPNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSDDVFDAGSVNNGGSTESLQLEFGVNSDS FT TYDATVDGTDWPRIPLPGHPPEPRVSGNSRTVTDFSPEADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGG FT TLKKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPLAATQW FT LFEYQPPPQVDRNIAERPFQGRK" FT gene 3572..4198 FT /gene="P3" FT CDS 3572..4198 FT /codon_start=1 FT /gene="P3" FT /product="major capsid protein" FT /db_xref="GOA:I1XV30" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:I1XV30" FT /protein_id="AFI93516.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVSRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSNLLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT gene 3597..4067 FT /gene="P4" FT CDS 3597..4067 FT /codon_start=1 FT /gene="P4" FT /product="putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:I1XV31" FT /protein_id="AFI93517.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDVEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QATYFSSSARPLPPPPAPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT gene 5130..5318 FT /gene="P6" FT CDS 5130..5318 FT /codon_start=1 FT /gene="P6" FT /product="ORF6" FT /db_xref="UniProtKB/TrEMBL:I1XV32" FT /protein_id="AFI93518.1" FT /translation="MLQSMVQTGPEFLYQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP FT NTSTLVIPKKMSLLLLL" FT gene 5348..5725 FT /gene="P7" FT CDS 5348..5725 FT /codon_start=1 FT /gene="P7" FT /product="ORF7" FT /db_xref="GOA:I1XV33" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1XV33" FT /protein_id="AFI93519.1" FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGGTL FT KKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPLAATQWLF FT EYQPPPQVDRNIAERPFQGRK" XX SQ Sequence 5865 BP; 1627 A; 1476 C; 1425 G; 1337 T; 0 other; gaaattgcag ctttagcgca taaactttac actcattgcg aacgttatag catatgattg 60 tattgactca gtctggaacc ttgcttttcg accaaagatt taaactttca aagtttcttt 120 ttgtagtcat tgcaacaggt tttcctcttc tcctgcaaca agcgagctta ctttacggtt 180 acaatcatga acagatttac cgcatttgcc gctcttttct ttatgttctc cctttgctca 240 actgcaaaag aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccattatg 300 agtgtctcga gtggggatta ctctgcggca cccaccccgc aatacaaatc gtgggccctt 360 ccatcattgt cgaactcgac aaccccacca ccgctgctgc ttacagatcg gagctactac 420 gaattagttc aagctcttat gtcaaaaatt cggttggatt ttcaaatggt tggggacatg 480 acatggaggc atttgtcaga aatgctattt gcctcctgga actccgtgag agaagtatcc 540 ctcagagcgg cctccgtaac cttatgggca attatcagca tttggttcgg tctctattgg 600 acgcttgcac ggttgattac tttgttcctc tggactttca gcatagaagc cttatgctta 660 attttgctcg gttgtataac cagcttgatc tacaagggcg cgctaagtct ttcagagcac 720 ttaccggttt tcctgtttat gtcccctctg aagattattt ggagggcagc tttctccaaa 780 aggaattaca agaatgagag ggctgtggaa ggatacaaag ggttttcggt cccacagaaa 840 ccgccaaagt ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg 900 aactgcattc gcttgtacag tggagagaac gcctgggtga cagctgaaca ctgtctagaa 960 ggcgctttcg caacgtcgtt gaaaactgga aacaggattc cgatgtcgac tttctttccc 1020 attttcaaaa gtacccgtaa tgatatctcc atactagtag gtccacccaa ctgggaaggt 1080 ctactatcag tcaaaggagc tcatttcatt acagctgaca aaatcggcaa aggtcctgcc 1140 tctttctaca ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagcc 1200 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg aacagggttt 1260 tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc cactggaaga ggagtgtaac 1320 tacaatgtta tgtctgttat accctcgatc ccaggaatca cttccccaaa ttatgtgttt 1380 gagtcgaccg ccgtaaaagg ccgcgtcttc tcggatgaag ctgtgaaaga gctagagcgg 1440 gaagcatccg aagccgtcaa gaaacttgcc agatttaaat cacttaccgg caagaactgg 1500 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc aacaaatgcg 1560 cccgcagaga aaactgctca aacaaactca gcagagaaga ctgctccatc aacttcagca 1620 gagaaaactg ctccaacaaa caagccttta aatgggcaag cggcaccgtc cgccaaaaca 1680 aacggcaact ccgacatccc cgacgccgct acaagcgcac caccaatgga caaaatggtc 1740 gaacagatca tcacagctat ggtggggaga atcaatctct cggagataga ggagaagata 1800 gtgagcaggg tgtctcagaa agccctgcag aagcccaaac aaaagaagcg cggaaggcgt 1860 ggagggaaga acaagcacaa cagttcacct cctacttcaa cgcaatctac aagtggggcg 1920 cccaagaagg aggctgcccc ccaggcttca ggaagtgcgg gcacatcccg tgctactacc 1980 acccccgcac cagaggcgaa acccagtggg ggcaaaaact ctgccaagtt catcccgagc 2040 tggcggagaa aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa 2100 gcctgaatct acaggctgcc aggtggctcc aacgcgcgga gtcggccact atccctggcg 2160 cagaagcaag aaagcgcgtg attgagaaaa cagtggaggc atacagaaat tgtataacta 2220 acgccccact gtgctccctt aaatccaaac tggattgggc tggctttcaa caagatatcc 2280 gtgaagcagt ccagtccctt gagctagacg ctggtgtagg tattccctat atcgcgtatg 2340 gcctccccac acaccgagga tgggttgagg accataagct tctcccagtg ctcactcagc 2400 tgacctttga ccgtctacag aagatgtcag aggccagctt tgaggatatg agcgcagaag 2460 agctggttca agaagggctc tgtgatccta tcagactatt tgtcaaagga gagccccata 2520 aacagagcaa actcgatgaa ggccgctacc gcctcatcat gtctgtttcc ttggtggatc 2580 aactggtagc ccgggttctg ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt 2640 ctgtgccttc caaacccggt tttggccttt caactgacac tcaaattgct gaattcttgg 2700 agtgtcttca aaaggtgtct ggagcgccat ctgtggaaga attgtgtgca aatcacaagg 2760 agtacacgcg cccaaccgac tgttccggtt tcgactggtc agtcgcgtat tggatgctgg 2820 aggatgatat ggaagtgaga aatcgcctga catttaataa cacccagctc accaaacgcc 2880 ttcgggctgc ctggttgaag tgcataggaa actccgtcct gtgcctgtcc gatggcactt 2940 tacttgccca aactgttccc ggtgtgcaaa agagcggaag ttacaataca ggttcctcca 3000 actctcgaat ccgggttatg gctgcctatc actgtggcgc caactgggca atggccatgg 3060 gggacgatgc tctcgaagcc cccaactccg acctggagga gtataaaaca ctaggtttca 3120 aagtcgaggt aggtcgagaa ctcgaattct gttcacacat tttcagaaat ccgaccctcg 3180 ccattccggt caacaccaac aaaatgctct acaagttgat ccatggttat aatccggaat 3240 gtggcaatcc agaagtgatt caaaactatc tggctgcagt attctctgtg ctgcaggaac 3300 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg agtgccacca 3360 caaaagaaca ctgaaggagc tcactaaaac tagccaagca tacgcgagtt gcaagcattg 3420 gaagttcaag cctcgttaca tcaaccggac aaaatagatt ataaattctt agcgggattt 3480 gctttaggat tctcatccgc aatcccattt tcagtagccg gtttatattt tgtttaccta 3540 aagatttcct cccacgtgcg atcaattgtt aatgagtacg gtcgtggtta aaggaaatgt 3600 caatggtggt gtacaacaac caagaaggcg aagaaggcaa tcccttcgca ggcgcgctaa 3660 cagagttcag ccagtggtta tggtcacggc ccctgggcaa cccaggcgcc gaagacgtag 3720 aagaggaggc aatcgccgct caagaagaac tggagtttcc cgaggacgag gctcaagcga 3780 gacattcgtg tttacaaagg acaacctcat gggcaactcc caaggaagtt tcaccttcgg 3840 gccgagtcta tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta 3900 taagatcaca agcaacttac ttcagttcgt cagcgaggcc tcttccacct cctccggctc 3960 catcgcttat gagttggacc cccattgcaa agtatcatcc ctccagtcct acgtcaacaa 4020 gttccaaatt acgaagggcg gcgccaaaac ttatcaagcg cggatgataa acggggtaga 4080 atggcacgat tcttctgagg atcagtgccg gatactgtgg aagggaaatg gaaaatcttc 4140 agataccgca ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt 4200 agactccgga tcagagcctg gtccaagccc acaaccaaca cccactccaa ctccccagaa 4260 gcacgagcga tttattgctt acgttggcat acctatgcta accattcagg ccagggagaa 4320 cgacgaccaa atcatattgg gttccttagg aaaccaaagg atgaaatata tagaggacga 4380 gaaccagaac tatacaaatg ttagttctga gtattactct caatcgagca tgcaagccgt 4440 ccctatgtat tactttaatg tcccgaaagg gcaatggtca gtcgacatca gctgcgaagg 4500 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg ggatgatcgc 4560 gtatccaaac gcggattccg attattggaa tgttggtgaa gcggatggtg tcaaaatttc 4620 gaagctacgc aacgataaca cctaccgcca aggtcaccca gaacttgaaa ttaactcgtg 4680 tcattttcgc gagggccaac tccttgaacg ggacgctaca attagcttcc acgttgaagc 4740 gcctactgat gggcgattct ttctcgttgg tcccgctatt cagaaaaccg caaagtataa 4800 ctatactatc tcatacggtg actggacgga ccgagacatg gaactggggc tgatcaccgt 4860 ggtgcttgat gaacatttag aaggcactgg ttcggctaac agagtgcggc ggcccccacg 4920 ggagggccac acctatatgg cctcgccgcg cgaaccggaa ggaaaaccgg ttggaaataa 4980 accaagggac gaaaccccga tacaaacgca ggaaagacaa cctgatcaaa ctccgtctga 5040 cgacgtattc gatgctggtt cggtaaacaa cggcggctca actgagtcgc tgcaattgga 5100 gttcggggta aactcggata gtacctacga tgctacagtc gatggtacag actggcccag 5160 aattcctcta ccagggcacc cacctgaacc tagagtttcc ggcaattcaa gaactgttac 5220 tgacttttct ccggaagccg atctattgga gaattgggat gccgaacact tcgaccctgg 5280 ttattccaaa gaagatgtcg ctgctgctac tattatagcg cacggcagta ttcaagatgg 5340 gcgaagtatg ttggagaaga gagaggaaaa tgtcaagaac aaaacctcct cctggaagcc 5400 cccgttacct aaagcggtga gcccagccat agccaaattg cgctcgattc gcaaatccca 5460 acccctcgag ggagggaccc ttaagaaaga cgccactgat ggtgtctcat ctattggcag 5520 tggttctcta acaggtggta cgcttaagag gaaggttact attgaagagc gtttactgca 5580 gaccttaaca actgagcaaa ggctgtggta cgagaatttg aagaaaacta accctctagc 5640 tgctacccaa tggctgtttg aatatcagcc acctccccaa gtagatagaa acatagctga 5700 aaggccattc caagggagga aatgagtcga ctcacgactt aaaactgagt gtccgccgga 5760 cattaagcgg aacgaaagcc gaaaggtgat taggctctca acgcctgcta gagaccgtcg 5820 aaagacgcga ctgtgtagcc aggatcctct tacagggttg tgtag 5865 //