ID JQ346190; SV 1; linear; genomic RNA; STD; VRL; 5865 BP. XX AC JQ346190; XX DT 10-MAY-2012 (Rel. 112, Created) DT 10-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Potato leafroll virus isolate ASL2000, complete genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5865 RA Huehnlein A., Schubert J., Thieme T., Zahn V., Steinbach P.; RT "Variants of PLRV with reduced symptome severity under field conditions"; RL Unpublished. XX RN [2] RP 1-5865 RA Huehnlein A., Schubert J., Thieme T., Zahn V., Steinbach P.; RT ; RL Submitted (03-JAN-2012) to the INSDC. RL Institute for Biosafety in Plant Biotechnology, Julius Kuehn Institute, RL Erwin-Baur-Str. 27, Quedlinburg 06448, Germany XX DR MD5; ca4b0eff2a97d13873c322e4fd8e45c0. DR EuropePMC; PMC4422679; 25946037. XX CC ##Assembly-Data-START## CC Assembly Method :: Laser Gene v. 8.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5865 FT /organism="Potato leafroll virus" FT /host="Solanum tuberosum L." FT /isolate="ASL2000" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2000" FT /db_xref="taxon:12045" FT 5'UTR 1..53 FT gene 54..797 FT /gene="P0" FT CDS 54..797 FT /codon_start=1 FT /gene="P0" FT /product="ORF0" FT /db_xref="GOA:I1XV16" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:I1XV16" FT /protein_id="AFI93502.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLLYGYNH FT EQIHRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPSI FT IVELDNPTTVAAYRSELLRISSSSYVKNSVGFSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRNLMGNYQHLVRSLLDACTVDYFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT gene 187..2106 FT /gene="P1" FT CDS 187..2106 FT /codon_start=1 FT /gene="P1" FT /product="polyprotein" FT /db_xref="GOA:I1XV17" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:I1XV17" FT /protein_id="AFI93503.1" FT /translation="MNRFTAFAALFFMFSLCSTAKEAGFQHPVFNFRGTSIMSVSSGDY FT SAAPTPQYKSWALPSLSNSTTPPPSLLTDRSYYELVQALMSKIRLDFQMVGDMTWRHLS FT EMLFASWNSVREVSLRAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGVLSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQAKSAERTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM FT VEQIITAMVGRINLSEIEERIVSRVSQKALQKPKQKKRGRRGGKTKQNSSPPTSTQSTS FT GAPKKEAAPQASGSAGTFRATTTPAPEAKPSGGKNSAKFIPSWRRKQQNSAGQKPDLKL FT NSKA" FT gene 1511..1651 FT /gene="Rap1" FT CDS 1511..1651 FT /codon_start=1 FT /gene="Rap1" FT /product="replication associated protein" FT /db_xref="UniProtKB/TrEMBL:I1XV18" FT /protein_id="AFI93504.1" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQNQQRGLLHQLQQRKLLQQTS FT L" FT gene <1524..3374 FT /gene="P2" FT CDS <1524..3374 FT /codon_start=1 FT /gene="P2" FT /product="putative RNA polymerase" FT /note="translated by ribosomal frameshift" FT /db_xref="GOA:I1XV19" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I1XV19" FT /protein_id="AFI93505.1" FT /translation="GLRSGERGCNKCARRENCSSKISREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQPLGDRGEDSEQGVSESPAEA FT QTKEARKAWREDQAKQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAEFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTGSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPTSDLEEYKTLGFKVEVGRELEFCSHIFRNPTFAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT gene 3572..5725 FT /gene="P5" FT /note="translated by amber stop codon suppression at FT 4196-4198" FT CDS 3572..5725 FT /codon_start=1 FT /transl_except=(pos:4196..4198,aa:OTHER) FT /gene="P5" FT /product="minor capsid protein" FT /note="read through protein" FT /db_xref="GOA:I1XV20" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1XV20" FT /protein_id="AFI93506.1" FT /translation="MSTVVVRGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVSRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCPILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARGNDDQIILGSLGSQRMKYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTARYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPLREGHTYMAS FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLRLEFGVNSDS FT TYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVTDFSSKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREESVKNKTSSWKLPLPEAVSPAIAKLRSIRKSQPLEGG FT TLKKDTTDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTDPPAATQW FT MFEYQPPPQVDRNIAKQPFQGRK" FT gene 3572..4198 FT /gene="P3" FT CDS 3572..4198 FT /codon_start=1 FT /gene="P3" FT /product="major capsid protein" FT /db_xref="GOA:I1XV21" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:I1XV21" FT /protein_id="AFI93507.1" FT /translation="MSTVVVRGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVSRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCPILWKGNGKSSDTAGSFRVTIRVALQNPK" FT gene 3597..4067 FT /gene="P4" FT CDS 3597..4067 FT /codon_start=1 FT /gene="P4" FT /product="putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q77E88" FT /protein_id="AFI93508.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT gene 5130..5318 FT /gene="P6" FT CDS 5130..5318 FT /codon_start=1 FT /gene="P6" FT /product="ORF6" FT /db_xref="UniProtKB/TrEMBL:I1XV23" FT /protein_id="AFI93509.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELSLTFLRKPIYWRIGMP FT NTSTLVIPKKMSQLLLL" FT gene 5348..5725 FT /gene="P7" FT CDS 5348..5725 FT /codon_start=1 FT /gene="P7" FT /product="ORF7" FT /db_xref="GOA:I1XV24" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1XV24" FT /protein_id="AFI93510.1" FT /translation="MLEKREESVKNKTSSWKLPLPEAVSPAIAKLRSIRKSQPLEGGTL FT KKDTTDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTDPPAATQWMF FT EYQPPPQVDRNIAKQPFQGRK" FT 3'UTR 5726..5865 XX SQ Sequence 5865 BP; 1618 A; 1475 C; 1435 G; 1337 T; 0 other; gaaattgcag ctttagcgca taaactttac actcattgcg aacgttatag catatgattg 60 tattgactca gtctggaacc ttgcttttcg accaaagatt taaactttca aagtttcttt 120 ttgttgtcat tgcaacaggt tttcctcttc tcctgcaaca agcgagctta ctttacggtt 180 acaatcatga acagattcac cgcatttgcc gctcttttct ttatgttctc cctttgctca 240 actgcaaaag aggcaggatt tcaacatccg gtcttcaact tccgaggcac ctccattatg 300 agtgtctcga gtggggatta ctctgcggca cccaccccgc aatacaaatc gtgggccctt 360 ccatcattgt cgaactcgac aaccccacca ccgtcgctgc ttacagatcg gagctactac 420 gaattagttc aagctcttat gtcaaaaatt cggttggatt ttcaaatggt tggggacatg 480 acatggaggc atttgtcaga aatgctattt gcctcctgga actccgtgag agaagtatcc 540 ctcagagcgg cctccgtaac cttatgggca attatcagca tttggttcgg tctttattgg 600 acgcttgcac ggttgattac tttgttcctc tggactttca gcatagaagc cttatgctta 660 attttgctcg gttgtataac cagcttgatc tacaagggcg tgctaagtct ttcagagcac 720 ttaccggttt tcctgtttat gtcccctctg aagattattt ggagggcagc tttctccaaa 780 aggaattaca agaatgagag ggctgtggaa ggatacaaag ggttttcggt cccacagaaa 840 ccgcccaagt ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg 900 aactgcattc gcttgtacag tggagagaac gccttggtga cagctgaaca ctgtctagaa 960 ggcgctttcg caacgtcgtt gaaaactggg aacaggattc cgatgtcgac tttctttccc 1020 attttcaaaa gtacccgtaa tgatatctcc atactagtag gtccacccaa ctgggaaggt 1080 ctactatcag tcaaaggagc tcatttcatt acagctgaca aaatcggcaa aggtcctgcc 1140 tctttctaca ctcttgagaa aggagagtgg atgtgccata gcgccaccat agatggagcc 1200 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg aacagggttt 1260 tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc cactggaaga ggagtgtaac 1320 tacaatgtta tgtctgttat accctcgatc ccaggaatca cttccccaaa ttatgtattt 1380 gagtcgaccg ccgtaaaagg ccgcgtcttc tcggatgaag ctgtgaaaga gctagagcgg 1440 gaagcatccg aagccgtcaa gaagcttgcc agattcaaat cacttaccgg caagaactgg 1500 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc aacaaatgcg 1560 cccgcagaga aaactgctca agcaaaatca gcagagagga ctgctccatc aacttcagca 1620 gagaaaactg ctccaacaaa caagccttta aatgggcaag cggcaccgtc cgccaaaaca 1680 aacggcaact ccgacatccc cgacgccgct acaagcgcac caccaatgga caaaatggtc 1740 gaacagatca tcacagctat ggtggggaga atcaacctct cggagataga ggagaggata 1800 gtgagcaggg tgtctcagaa agccctgcag aagcccaaac aaaagaagcg cggaaggcgt 1860 ggagggaaga ccaagcaaaa cagttcacct cctacttcaa cgcaatctac aagtggggcg 1920 cccaagaagg aggctgcccc ccaggcttca ggaagtgcgg gcacattccg cgctactacc 1980 acccccgcac cagaggcgaa acccagtggg ggcaaaaact ctgccaagtt catcccgagc 2040 tggcggagaa aacagcagaa ttcggctggc caaaagccgg atctgaagct gaactccaaa 2100 gcctgaatct acaggctgcc aggtggctcc aacgcgcaga gtcggccact atccctggcg 2160 cagaagcaag aaagcgcgtg attgagaaaa cagtggaggc atacagaaat tgtgtaacta 2220 acgccccact gtgctccctt aaatccaaac tggattgggc tggctttcaa caagatattc 2280 gtgaagcagt ccagtccctt gagctagacg ctggtgtagg cattccctat atcgcgtatg 2340 gcctccccac acaccgagga tgggttgagg accataagct tctcccagtg ctcactcagc 2400 tgacctttga ccgactacag gggatgtcag aggccagctt tgaggatatg agcgcagaag 2460 agctggttca agaagggctc tgtgatccta tcagactatt tgtcaaagga gagccccaca 2520 aacagagcaa actcgatgaa ggccgctacc gcctcatcat gtctgtttcc ttggtggatc 2580 aactggtagc ccgggttctg ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt 2640 ctgtgccttc caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg 2700 agtgtcttca aaaggtgtct ggagcgccat ctgtggaaga attgtgtgca aaccacaagg 2760 agtacacgcg cccaaccgac tgttccggtt tcgactggtc agtcgcgtat tggatgctgg 2820 aggatgatat ggaggtgaga aatcgcctga catttaataa cacccagctc accaagcgcc 2880 ttcgggctgc ctggttaaag tgcataggaa actccgtcct gtgcctgtcc gatggcactt 2940 tacttgccca aactgttccc ggtgtgcaaa agagcggaag ttacaataca ggttcctcca 3000 actctagaat ccgggttatg gctgcctatc actgtggcgc cgactgggca atggccatgg 3060 gggacgatgc tctcgaggcc cccacctccg acctggagga gtataaaaca ctaggtttta 3120 aagtcgaggt aggtcgagaa ctcgaattct gttcacacat cttcagaaat ccgaccttcg 3180 ccgttccggt caacaccaac aaaatgcttt acaagttgat ccatggttat aatccggaat 3240 gtggcaatcc agaagtgatt caaaactatc tggctgcagt attctctgtg ctgcaggaac 3300 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg agtgccacca 3360 caaaagaaca ctgaaggagc tcactaaaac tagccaagca tacgcgagtt gcaagcattg 3420 gaagttcaag cctcgttaca ttaaccggac aaaatagatt ataaattctt agcgggattt 3480 gctttaggat tctcatccgc aatcccattt tcagtagccg gtttatattt tgtttaccta 3540 aagatttcct cccacgtgcg atcaattgtt aatgagtacg gtcgtggtta gaggaaatgt 3600 caatggtggt gtacaacaac caagaaggcg aagaaggcaa tcccttcgca ggcgcgctaa 3660 cagagttcag ccagtggtta tggtcacggc ccctgggcaa cccaggcgcc gaagacgcag 3720 aagaggaggc aatcgccgct caagaagaac tggagtttcc cgaggacgag gctcaagcga 3780 gacattcgtg tttacaaagg acaacctcat gggcaactcc caaggaagtt tcaccttcgg 3840 gccgagtcta tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta 3900 taagatcaca agcatcttac ttcagttcgt cagcgaggcc tcttccacct cctccggttc 3960 catcgcttat gagttggacc cccattgcaa agtatcatcc ctccagtcct acgtcaacaa 4020 gttccaaatt acgaagggcg gcgccaaaac ttatcaagcg cggatgataa acggggtaga 4080 atggcacgat tcttctgagg atcagtgccc gatactgtgg aagggaaatg gaaaatcttc 4140 agataccgca ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt 4200 agactccgga tcagagcctg gtccaagccc acaaccaaca cccactccaa ctccccagaa 4260 gcacgagcga tttattgctt acgttggcat acctatgcta accattcagg ccagggggaa 4320 cgacgaccaa atcatattgg gttccttagg gagccaaagg atgaaatata tagaagacga 4380 gaaccagaac tatacaaatg ttagttctga gtattactct caatcgagca tgcaagccgt 4440 ccctatgtat tacttcaatg tcccgaaagg gcaatggtca gtcgacatca gctgcgaagg 4500 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg ggatgatcgc 4560 gtattcaaac gcggattccg attattggaa tgttggtgaa gcggatggtg taaaaatttc 4620 gaagctacgc aacgataaca cctaccgcca aggtcaccca gaacttgaaa ttaactcgtg 4680 tcattttcgc gagggccaac tccttgaacg ggacgctaca attagctttc acgttgaagc 4740 gcctactgat gggcgattct ttttagttgg tcccgctatc cagaaaaccg caaggtataa 4800 ctatactatc tcatacggtg actggacgga ccgggacatg gaactggggc tgatcactgt 4860 ggtgcttgat gaacatttag aaggcactgg ttcggctaac agagtgcggc ggcccctacg 4920 ggagggccac acctatatgg cctcgccgcg cgaaccggaa ggaaaaccgg ttggaaataa 4980 accaagggac gaaaccccga tacaaacgca ggaaagacaa cctgatcaaa ctccgtctga 5040 cgacgtatcc gatgctggtt cggtaaacag cggcggctca actgagtcgc tgcgattgga 5100 gttcggggta aactcagata gtacctacga tgctacagtc gatggtacag actggcccag 5160 aattcctcca ccaaggcacc cacctgaacc tagagtttcc ggcaattcaa gaactgtcac 5220 tgacttttct tcgaaagccg atctattgga gaattgggat gccgaacact tcgaccctgg 5280 ttattccaaa gaagatgtcg cagctgctac tattatagcg cacggcagta ttcaagatgg 5340 gcgaagtatg ttggagaaga gagaggaaag tgtcaagaac aaaacctctt cctggaagct 5400 cccgttacct gaagcggtga gcccagccat agccaaattg cgctcgattc gcaaatccca 5460 acctcttgag ggagggaccc ttaagaaaga caccactgat ggtgtctcat ctattggcag 5520 tggttctcta acaggtggca cgcttaagag gaaggcaact attgaagagc gtttactgca 5580 gaccttaaca actgaacaaa ggctgtggta cgagaatttg aagaaaactg accctccagc 5640 tgctacccaa tggatgtttg aatatcagcc acctccccaa gtagatagaa acatagccaa 5700 acagccattc caagggagga aatgagtcga ctcacgactt gaaactgagt gtccgccgga 5760 cattaagcgg aacgaaagcc gaaaggtgat taggctctca acgcctgcta gagaccgtcg 5820 aaagacgcga ctgtgtagcc aggatcctct tacagggttg tgtag 5865 //