ID JQ346189; SV 1; linear; genomic RNA; STD; VRL; 5870 BP. XX AC JQ346189; XX DT 10-MAY-2012 (Rel. 112, Created) DT 10-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Potato leafroll virus isolate SymlessLS10, complete genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5870 RA Huehnlein A., Schubert J., Thieme T., Zahn V., Steinbach P.; RT "Variants of PLRV with reduced symptome severity under field conditions"; RL Unpublished. XX RN [2] RP 1-5870 RA Huehnlein A., Schubert J., Thieme T., Zahn V., Steinbach P.; RT ; RL Submitted (03-JAN-2012) to the INSDC. RL Institute for Biosafety in Plant Biotechnology, Julius Kuehn Institute, RL Erwin-Baur-Str. 27, Quedlinburg 06448, Germany XX DR MD5; c4c64e6710c329430e681f5d42661e7f. DR EuropePMC; PMC4422679; 25946037. XX CC ##Assembly-Data-START## CC Assembly Method :: Lasergene v. 8.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5870 FT /organism="Potato leafroll virus" FT /host="Solanum tuberosum L." FT /isolate="SymlessLS10" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="10-Sep-2010" FT /db_xref="taxon:12045" FT 5'UTR 1..53 FT gene 54..797 FT /gene="P0" FT CDS 54..797 FT /codon_start=1 FT /gene="P0" FT /product="ORF0" FT /db_xref="GOA:Q5URV4" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q5URV4" FT /protein_id="AFI93493.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLLYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPSI FT IVELDNPTTAAAYRSELLRISSSSYVKNSVGFSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRNLMGNYQHLVRSLLDACTVDYFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT gene 187..2106 FT /gene="P1" FT CDS 187..2106 FT /codon_start=1 FT /gene="P1" FT /product="polyprotein" FT /db_xref="GOA:I1XV08" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:I1XV08" FT /protein_id="AFI93494.1" FT /translation="MNRFTAFAALFFMFSLCSTAKEAGFQHPAFNFRGTSIMSVSSGDY FT SAAPTPQYKSWALPSLSNSTTPPPPLLTDRSYYELVQALMSKIRSDFQMVGDMTWRHLS FT EMLFASWNSVREVSLRAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTASSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKTKQNSSPPTLTQSTS FT GAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT gene 1511..1651 FT /gene="Rap1" FT CDS 1511..1651 FT /codon_start=1 FT /gene="Rap1" FT /product="replication associated protein" FT /db_xref="UniProtKB/TrEMBL:B0FEU0" FT /protein_id="AFI93495.1" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQTQQRRLLHQLQQRKLLQQTS FT L" FT gene <1524..3374 FT /gene="P2" FT CDS <1524..3374 FT /codon_start=1 FT /gene="P2" FT /product="putative RNA polymerase" FT /note="translated by ribosomal frameshift" FT /db_xref="GOA:I1XV10" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I1XV10" FT /protein_id="AFI93496.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCFINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREDQAKQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPISDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT gene 3571..5724 FT /gene="P5" FT CDS 3571..5724 FT /codon_start=1 FT /transl_except=(pos:4195..4197,aa:OTHER) FT /gene="P5" FT /product="minor capsid protein" FT /note="read through protein" FT /db_xref="GOA:I1XV11" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1XV11" FT /protein_id="AFI93497.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLVGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSAGSIAYELDPHCKISSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDPAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTNISSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLI FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGSDSAHRLRRPPREGHTYMVS FT PNEPEGKPVENKPRDETPIQTQERKPDQTPSHDVSDAGSVNSGGSTESLQLEFGLNSDS FT THDATVDGADWPRIPPPRHPPEPRDSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV FT AAATLIAHRSIQDGRSMLEKREESVKRKTSSWKPPLPKAVSPAIAELRSIRKTQPLEGG FT TLNKGTTDGASTIGSGSLTGGTFKRKQTYEERLLQTLTTEQRLWYENLKKTDPGAATQW FT LFENQPPPQVYRNIAEKPFQGRK" FT gene 3571..4197 FT /gene="P3" FT CDS 3571..4197 FT /codon_start=1 FT /gene="P3" FT /product="major capsid protein" FT /db_xref="GOA:B4XQW7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B4XQW7" FT /protein_id="AFI93498.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLVGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSAGSIAYELDPHCKISSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDPAGSFRVTIRVALQNPK" FT gene 3596..4066 FT /gene="P4" FT CDS 3596..4066 FT /codon_start=1 FT /gene="P4" FT /product="putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:I1XV13" FT /protein_id="AFI93499.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEYSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QVSYFSSSARPLPPPPAPSLMNWTPIAKYHPSSPTSTSSKLRRAALKPIKRG" FT gene 5129..5248 FT /gene="P6" FT CDS 5129..5248 FT /codon_start=1 FT /gene="P6" FT /product="truncated ORF6" FT /db_xref="UniProtKB/TrEMBL:I1XV14" FT /protein_id="AFI93500.1" FT /translation="MLQSMVQTGPEFLPPGTHLNQEIPAIRELLLTFLRKPIF" FT gene 5347..5724 FT /gene="P7" FT CDS 5347..5724 FT /codon_start=1 FT /gene="P7" FT /product="ORF7" FT /db_xref="GOA:I1XV15" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I1XV15" FT /protein_id="AFI93501.1" FT /translation="MLEKREESVKRKTSSWKPPLPKAVSPAIAELRSIRKTQPLEGGTL FT NKGTTDGASTIGSGSLTGGTFKRKQTYEERLLQTLTTEQRLWYENLKKTDPGAATQWLF FT ENQPPPQVYRNIAEKPFQGRK" FT 3'UTR 5725..5870 XX SQ Sequence 5870 BP; 1633 A; 1479 C; 1429 G; 1329 T; 0 other; gaaattgcag ctttagcgca taaactttac actcattgcg agcgttatag catatgattg 60 tattgactca gtctggaacc ttgcttttcg accaaagatt taaactttca aagtttcttt 120 ttgttgtcat tgcaacaggt tttcctcttc tcctgcaaca agcgagctta ctttacggtt 180 acaatcatga acagatttac cgcatttgcc gctcttttct ttatgttctc cctttgctca 240 actgcaaaag aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccattatg 300 agtgtctcga gtggggatta ctctgcggca cccaccccgc aatacaaatc gtgggccctt 360 ccatcattgt cgaactcgac aaccccacca ccgccgctgc ttacagatcg gagctactac 420 gaattagttc aagctcttat gtcaaaaatt cggtcggatt ttcaaatggt tggggacatg 480 acatggaggc atttgtcaga aatgctattt gcctcctgga actccgtgag agaagtatcc 540 ctcagagcgg cctccgtaac cttatgggca attatcagca tttggttcgg tctctattgg 600 acgcttgcac ggttgattac tttgttcctc tggactttca gcatagaagc cttatgctta 660 attttgctcg gttgtataac cagcttgatc tacaagggcg cgctaagtct ttcagagcac 720 ttaccggttt tcctgtttat gtcccctctg aagattattt ggagggcagc tttctccaaa 780 aggaattaca agaatgagag ggctgtggaa ggatacaaag ggttttcggt cccacagaaa 840 ccgccaaagt ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg 900 aactgcattc gcttgtacag tggagagaac gccttggtga cagctgaaca ctgtctagaa 960 ggcgctttcg caacgtcgtt gaaaactgga aacaggattc cgatgtcgac tttctttccc 1020 attttcaaaa gtacccgtaa tgatatctcc atactagtag gtccacccaa ctgggaaggt 1080 ctactatcag tcaaaggagc tcatttcatt acagctgaca aaatcggcaa aggtcctgcc 1140 tctttctaca ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagcc 1200 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg aacagggttt 1260 tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc cactggaaga ggagtgtaac 1320 tacaatgtta tgtctgttat accctcgatc ccaggaatca cttccccaaa ttatgtgttt 1380 gagtcgaccg ccgtaaaagg ccgtgtcttc tcagatgaag ctgtgaaaga gctagagcgg 1440 gaagcatccg aagccgtcaa gaagcttgcc agatttaaat cacttaccgg caagaactgg 1500 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc aacaaatgcg 1560 cccgcagaga aaactgctca aacaaactca gcagagaaga ctgcttcatc aacttcagca 1620 gagaaaactg ctccaacaaa caagccttta aatgggcaag cggcaccgtc cgccaaaaca 1680 aacggcaact ccgacatccc cgacgccgct acaagcgcac caccaatgga caaaatggtc 1740 gaacagatca tcacagctat ggtggggaga atcaatctct cggagataga ggagaagata 1800 gtgagcaggg tgtctcagaa agccctgcag aagcccaaac aaaagaagcg cggaaggcgt 1860 ggagggaaga ccaagcaaaa cagttcacct cctactttaa cgcaatctac aagtggggcg 1920 cccaagaagg aggctgcccc ccaggcttca ggaagtgcgg gcacatcccg cgctactacc 1980 acccccgcac cagaggcgaa acccagtggg ggcaaaaact ctgccaagtt catcccgagc 2040 tggcggagaa aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa 2100 gcctgaatct acaggctgcc aggtggctcc aacgcgcgga gtcagccact atccctggcg 2160 cagaagcaag aaagcgcgtg attgagaaaa cagtggaggc atacagaaat tgtgtaacta 2220 acgccccact gtgctccctt aaatccaaac tggattgggc tggctttcaa caagatatcc 2280 gtgaagcagt ccagtccctt gagctagacg ctggtgtagg cattccctat atcgcgtatg 2340 gcctccccac acaccgagga tgggttgagg accataagct tctcccagtg ctcactcagc 2400 tgacctttga ccgactacag gggatgtcag aggccagctt tgaggatatg agcgcagaag 2460 agctggttca agaagggctc tgtgatccta tcagactatt tgtcaaagga gagccccaca 2520 aacagagcaa actcgatgaa ggccgctacc gcctcatcat gtctgtttcc ttggtggatc 2580 aactggtagc ccgggttctg ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt 2640 ctgtgccttc caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg 2700 agtgtcttca aaaggtgtct ggagcgccat ctgtggaaga attgtgtgca aatcacaagg 2760 agtacacgcg cccaaccgac tgttccggtt tcgactggtc agtcgcgtat tggatgctgg 2820 aagatgatat ggaggtgaga aatcgcctga catttaataa cacccagctc accaagcgcc 2880 ttcgggccgc ctggttgaag tgcataggaa actccgtcct gtgcctgtcc gatggcactt 2940 tacttgccca aactgttccc ggtgtgcaaa agagcggaag ttacaataca agttcttcca 3000 actccagaat ccgggttatg gctgcctacc actgtggcgc cgactgggcg atggccatgg 3060 gggatgatgc tctcgaggcc cccatctccg acctggagga gtataaaaca ctgggtttca 3120 aagtcgaggt aggtcgagaa ctcgaattct gttcacatat cttcagaaat ccgaccctcg 3180 ccgttccggt caacaccaac aaaatgcttt acaagttgat ccatggttat aatccggaat 3240 gtggcaatcc agaagtgatt caaaactatc tggccgcagt attctctgtg ctgcaggagc 3300 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg agtgccacca 3360 caaaagaaca ctgaaggagc tcacaaaact agccaagcaa acgcgagttg caagcattgg 3420 aagttcaagc ctcgttacat caaccggaca aaatagatta taaattctta gcgggatttg 3480 ctttaggatt ctcatccgca atcccatttt cagtagccgg tttatactta gtttacctaa 3540 agatttcctc ccacgtgcga gcaattgtta atgagtacgg tcgtggttaa aggaaatgtc 3600 aatggtggtg tacaacaacc aagaaggcga agaaggcaat cccttcgcag gcgcgctaac 3660 agagtacagc cagtggttat ggtcacggcc cctgggcaac ccaggcgccg aagacgcaga 3720 agaggaggca atcgccgctc aagaagaact ggagttcccc gaggacgagg ctcaagcgag 3780 acattcgtgt ttacaaagga caacctcgtg ggcaactccc aaggaagttt caccttcggg 3840 ccgagtctat cagactgtcc ggcattcaag gatggaatac tcaaggccta ccatgagtat 3900 aagatcacaa gtatcttact tcagttcgtc agcgaggcct cttccacctc cgccggctcc 3960 atcgcttatg aattggaccc ccattgcaaa atatcatccc tccagtccta cgtcaacaag 4020 ttccaaatta cgaagggcgg cgctaaaacc tatcaagcgc ggatgataaa cggggttgaa 4080 tggcacgatt cgtctgagga tcagtgccgg atactgtgga aaggaaatgg aaaatcttca 4140 gaccccgcag gatcctttag agtcaccatc agagtggctt tgcaaaaccc caaataggta 4200 gactccggat cagagcctgg tccaagccca caaccaacac ccactccaac tccccaaaag 4260 catgagcgat ttattgctta tgttggcata cctatgctga ccattcaagc tagggagaac 4320 gacgaccaaa tcatattggg ttccttaggg agccaaagga tgaaatacat tgaggacgag 4380 aaccagaact atacgaatat tagttctgag tattactctc aatcgagcat gcaagccgtc 4440 cccatgtatt acttcaatgt gccaaaaggg caatggtcag tcgacattag ctgtgaaggg 4500 tatcaaccca ctagcagtac ttcggatccg aaccgaggca ggagtgacgg gatgatcgcg 4560 tactcaaacg cggattccga ctattggaac gttggtgaag cggatggtgt caaaatttcg 4620 aagctacgca acgataacac ctaccgccaa ggtcacccag aacttgaaat taactcgtgt 4680 cattttcgcg agggtcaact tttagaacgg gatgctacaa ttagcttcca cgttgaagcg 4740 cctactgatg ggcgattctt tctcattggc cccgccatcc agaaaaccgc aaagtataac 4800 tatactatct catacggtga ctggactgac cgggacatgg aactggggtt gatcacagtg 4860 gtgcttgatg aacatttaga aggctctgat tcggctcaca gattacggcg gcccccacgg 4920 gagggccaca cctatatggt gtcgccgaac gaaccggaag gaaaaccggt tgaaaacaaa 4980 ccaagggacg aaaccccgat acaaacgcag gaaagaaaac ctgatcaaac tccgtctcat 5040 gacgtatccg atgctggttc ggtaaatagt ggcggttcaa ctgagtcgct gcaattggag 5100 ttcgggctaa attcagatag tacccacgat gctacagtcg atggtgcaga ctggcccaga 5160 attcctcccc ccaggcaccc acctgaacca agagattccg gcaattcgag aactgttact 5220 gacttttctc cgaaagccga tcttttagaa aattgggatg ctgaacactt cgaccccggt 5280 tattcaaagg aagacgtcgc agctgctact cttatagcac accgcagtat tcaggatggg 5340 cgaagtatgt tggagaagag agaggaaagt gtcaaacgca aaacctcttc ctggaagccc 5400 ccgctgccta aagcggtgag cccagccata gccgaattgc ggtcaatccg taagacccaa 5460 cccctcgagg gtgggacact gaataagggc actactgatg gtgcctcaac aattggcagt 5520 ggttctctaa ctggtggtac gttcaaaagg aaacagactt atgaagagcg cttgctacag 5580 accttaacaa ctgaacaaag gctgtggtat gagaatttaa agaaaactga tccaggagct 5640 gccacccaat ggctgtttga aaatcagcca cctccccaag tgtatagaaa catagctgaa 5700 aagccattcc aagggaggaa atgagtcgac tcacgactta aaactgagtg tccgccggac 5760 attaagcgga acgaaagccg aaaggtgatt aggctctcaa cgcctgctag agaccgtcga 5820 aagacgcgac tgtgtagcca ggatcctctt acagggttgt gtagaatcga 5870 //