ID JQ340310; SV 1; linear; genomic RNA; STD; VRL; 6707 BP. XX AC JQ340310; XX DT 12-FEB-2012 (Rel. 111, Created) DT 05-JUN-2012 (Rel. 113, Last updated, Version 3) XX DE Astrovirus wild boar/WBAstV-1/2011/HUN, complete genome. XX KW . XX OS Astrovirus wild boar/WBAstV-1/2011/HUN OC Viruses; Riboviria; Astroviridae; Mamastrovirus; OC unclassified Mamastrovirus. XX RN [1] RP 1-6707 RX PUBMED; 22398915. RA Reuter G., Nemes C., Boros A., Kapusinszky B., Delwart E., Pankovics P.; RT "Astrovirus in wild boars (Sus scrofa) in Hungary"; RL Arch. Virol. 157(6):1143-1147(2012). XX RN [2] RP 1-6707 RA Pankovics P., Reuter G.; RT ; RL Submitted (29-DEC-2011) to the INSDC. RL Regional Laboratory of Virology, ANTSZ Baranya County Institute of State RL Public Health Sevice, Szabadsag u. 7., Pecs, Baranya H-7623, Hungary XX DR MD5; e7f5e4fa03b9b8275b0ef5c1ecdc8540. DR EuropePMC; PMC3506007; 22398915. XX FH Key Location/Qualifiers FH FT source 1..6707 FT /organism="Astrovirus wild boar/WBAstV-1/2011/HUN" FT /host="Sus scrofa (wild boar)" FT /strain="wild boar/WBAstV-1/2011/HUN" FT /mol_type="genomic RNA" FT /country="Hungary" FT /isolation_source="fecal sample" FT /collection_date="Apr-2011" FT /db_xref="taxon:1137931" FT CDS 104..2662 FT /codon_start=1 FT /product="ORF1a" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:H6WX89" FT /protein_id="AEZ67024.1" FT /translation="MVDQLRCLPGHRPNSPWDIRTLPRHMIYPTLSTDPRDRVIIASSV FT TTDNEWVTYVLDGDSWRQTICAPDEQSVILVCALLIDKEEKENEIATLKMENDRKNQQC FT AYFSQQIPPKTTGAKWSWLSILALLVLIHATFKGAVAWVTQSTSHGVEYDKTIKLNEEL FT DEFITIALQKNWTRSVTEGSAGHYVTSGLGWKGKSGEGAIGRYGSRKHRLHADTVYKAI FT PSSGTEWSRERRGGMCTWQERCTIAEGNGRKVCGCLNRAAGCVSQLRISVTVLAPLQTI FT YTIYLTCGLAVIYHFDPIATSLISVVHLVTFSIVGMFLPDVDYIKNLRAVGSVTVIVLA FT HGFVNFLESPPLCSTAVCFVWRLVRLLQAMRGQVIEIRDSSGKITQKISSLEGPLFKFF FT QGLKAKLKQVRATSVPLVRINPAAVCHISTGDGSKGTGFFCANYVVTAAHVTGNHKVAT FT ISYQGKNYQSNVKKTSEKDMIFLEIPPALQGVPRFKLSKKYNCDWVCVLAPSGEGAFVT FT SVVEGKAHGDTFSYPCPTRDGMSGAPLLDVDGHVLGIHQTNTGYTGGAVRLEHEDVIDP FT PKENTQVAALKKQIEELKMQLAQKDAAPATPPPKPQRPPRIKDMKQCNMEDSDIVELIR FT IAMQREMGILREEINDSLLQKKKGKSKHGRGRKHGGGRTRKIGKMFTEEEYQEMLDSGL FT EPEQIRAIAEELYEQQHDFPEWSDPEDDDEVNEWWFGGDHSANVNDDDNDIPSYYQKKK FT KPLSDYLIKEWTKESIDEMLTSLSPLEMKKAQPLLQHLKCEDPLKKTVIVAMLDRVLTS FT NGLSPVSDGLEYQQRMKPKNGKPGRHDPQKPTSARGKSQQ" FT CDS <2542..4110 FT /codon_start=1 FT /product="ORF1b" FT /note="start codon not determined" FT /db_xref="GOA:H6WX90" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:H6WX90" FT /protein_id="AEZ67025.1" FT /translation="WSFTSVRWPRIPTEDEAKKRQAGAPRSPEADLGAWKKSAVKPRRH FT LVPDGYPVYCNLPVNRPICDYNIPDEPLLGILPPAQSEFEYAPTVWGPEAFAKSFEKFD FT YAPYCDFERDYPECTQFADWAWRVHHSYLEDTKVIHISATEKNLDSTPAYPKMLDYETE FT EDFLDEHGWDPYVSAFSAIDRGYQPDVLWYCFLKKEILKKKKIEDSDIRQIVCADPIYA FT RIGACFEQHQNHLTKLHTETKSGQCGWSPFNGGFTRLCERLESKPGVFVELDWTRFDGT FT IPAPLLKRIKKLRFSMLCEEHQKRYQHIYAWYVKQLLNRFVMMPSGEVTKQTRGNPSGQ FT ISTTIDNNMVNIWLQAFEFCWFFGPDKELWRDYDTIVYGDDRLTRYPILPENYKEKGTI FT HLYKSVFGMWNKTRKVKTSETLEGLTFCGFTVGPDRLPYPTDEEKLYAGLVTPARKLPD FT VTALHGKLLSLQLLMHNHPDSAFKDYINKCLAETARHAEDLPARLTERQMDRLWRGGPK FT HKPNG" FT CDS 4103..6640 FT /codon_start=1 FT /product="ORF2" FT /note="capsid protein" FT /db_xref="GOA:H6WX91" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H6WX91" FT /protein_id="AEZ67026.1" FT /translation="MANNQKNVQPKVVTTTTTTTSRRRGRRRRRTPRTATSSKTTVRKV FT AVLGQSRRPPRRRFNRPGNSNQPSGSTFKQRITATLGTIGSNQGNTIELEASVLLNPAL FT MKETTGSNAFGPLQMYAANYSLWRARDITVKLTPLIGGSAVSGTAIRTSLNLSAQPGSP FT SWSALGARRHRDTNPGRPMVMRIPGNAILGQKKGWFLCNTKNDPMMCIAGSIEIHTLGK FT TLSAYRNEDFTGPLFLAELTATWEFKNYNPEPGMLNLVKTKTSEQPQTIKIHSKPGDPI FT LISVPSDSQMARTVAQVSTAADSSASEIVWQICDATAMVVEGLLPQPFEWLFKAGWWFV FT KKIANKSQNRNRPGEPDPGELTFQVFQSISDAQNGVPCIATGNASSTNARITNLEMMQI FT TPGNLGNAQVSPASMGRSGNPTTNPITIVCPSMLSQPPIYATLCTKPPLNCIAMQGLGQ FT HKRKVHSYSIHELSDPSFFQDGNVVDPLTIPADVYPIYKKVASEYTPIGEVYAASYAKL FT NNDPLHWTLCLWRATVTTEIKMQGMGERVDQFFFIQPNIEQDPARLPRFTQQVRATNQK FT STGQEPINVSVGKWYLTVFASYRGTQSYNNNGVNYFVDTQLISGGSLQIDPGFDAYPAG FT AVLTTAQPLQLNIPVAPTTLTTREILAFREMVNAQSSPFPLPPPPSEYDNLEMPPLEGE FT EEEEQGAIGDPTPLEEANQQRIRGPAAIIKMNPESALDVKNWVEFGHRKRPPTPFSPIE FT EEEEEDSDLDDDDYAEPPEIIKNLLTPEAKDLYGDLRRKGLSHEQATRAAQAAFPHMAL FT EAWEAAYHNAMADGLSPPTARDCAWSAVSDFLS" XX SQ Sequence 6707 BP; 2009 A; 1489 C; 1553 G; 1656 T; 0 other; tccaaattga ccgttggtgg cgatggcccg taagggattt acatccaagg ttgatttagc 60 tgtcagctct ggcaactaca acgctaggct ccaggccggc gtgatggttg accagttgag 120 gtgcttgcca gggcaccgac caaattcccc ctgggatatc aggacactac cacgtcacat 180 gatctatcca actttgtcta ctgacccaag agaccgtgtg attatagcat cgtcagtcac 240 aacagacaat gagtgggtga cctatgtcct tgatggggat agctggcggc aaaccatttg 300 tgctccagat gaacagtctg tcattcttgt atgcgccctt ctcattgaca aggaagagaa 360 ggaaaatgaa attgcaacac tcaagatgga aaatgatcga aagaatcaac aatgtgcata 420 ctttagtcaa cagataccac caaaaactac tggagcaaaa tggtcctggc tttcaatcct 480 tgccctgctg gttctgatcc atgctacatt caagggagca gtagcctggg tgacacaaag 540 cacatctcat ggtgttgagt atgataagac tatcaaactt aatgaagaac tggatgagtt 600 catcactatt gcactacaga agaattggac aagatcggta accgagggga gtgctggtca 660 ctatgtaacc agtggtttgg gttggaaagg caaaagcggt gaaggggcaa ttggtaggta 720 cgggagcagg aagcacaggc tacatgctga cacggtctat aaggccattc ccagtagtgg 780 gacggaatgg tcacgcgagc gccgaggagg gatgtgtacc tggcaggagc gatgcacaat 840 agctgagggg aacgggagaa aggtgtgcgg ctgtttgaat cgcgcggcag gatgtgtctc 900 acagctaaga atcagcgtaa cagtgttagc accacttcaa acaatttata ccatctactt 960 aacatgtggt ttggcagtaa tctaccattt tgatccaatt gcaacatctt tgatttctgt 1020 tgtgcattta gtaacctttt ctatagtggg gatgttcctc ccagatgttg attacatcaa 1080 gaatttgaga gcagtcgggt cagtgacagt aattgttctg gcccacggat ttgtgaactt 1140 tttggaatcc cccccattgt gctcgacggc agtgtgcttc gtctggaggt tggtacgcct 1200 tctacaagca atgcggggac aagttataga aataagggac tcatctggga agataacaca 1260 aaaaatcagc tctcttgaag gccccctatt taaattcttt caggggctta aagccaaact 1320 taagcaggtt agagcaacaa gtgtaccttt agtcaggatt aatccagcag cagtgtgcca 1380 catctcaact ggtgatggct caaaggggac tggtttcttt tgtgcaaact atgtagtaac 1440 agcagcacat gttactggga atcataaggt agccaccatc agctaccagg ggaagaatta 1500 tcaatctaac gtaaagaaga catcagagaa agatatgatc ttccttgaga taccaccagc 1560 cctacaaggt gttcctcgtt ttaagttatc aaagaaatat aactgtgact gggtttgtgt 1620 cctagcacct agtggtgaag gggcatttgt aacatcagta gttgaaggca aggctcatgg 1680 tgacacgttc tcttatccct gcccaactag ggacggaatg tctggagcac cgctgcttga 1740 tgtggatggc catgtgcttg gcatacatca aaccaacact ggatacaccg gtggtgctgt 1800 tcgacttgaa catgaggatg tgattgaccc acctaaagaa aatacccagg ttgcagccct 1860 taagaaacaa atagaggaac ttaagatgca gcttgcacag aaggatgctg ctcctgctac 1920 accaccccca aaaccacaga gacccccacg tattaaggac atgaaacaat gtaatatgga 1980 agactctgac attgttgagt tgattaggat tgccatgcaa cgtgagatgg gaatcttacg 2040 tgaggagatt aatgatagtc ttctccagaa aaagaagggt aagtccaagc atggccgtgg 2100 gaggaaacat ggtggtggac gcacgagaaa gatcggtaag atgtttactg aggaggaata 2160 tcaggagatg cttgactcag gtcttgagcc agagcaaatc cgggcaattg cagaagaact 2220 ctatgagcag caacatgact tccctgagtg gagtgaccct gaagatgatg atgaggtaaa 2280 tgagtggtgg tttggtggag accactctgc caacgtcaat gacgatgata atgatatacc 2340 atcttactac caaaagaaga agaaaccact tagtgactac ctcatcaaag agtggactaa 2400 ggaaagtatt gatgaaatgc tgacttctct ctctcctctt gagatgaaga aggcacaacc 2460 acttctccaa cacctcaaat gtgaagatcc actcaagaag acagtcattg ttgcaatgct 2520 ggaccgtgtt ttaacatcta atggtctttc accagtgtcc gatggcctcg aataccaaca 2580 gaggatgaag ccaaaaaacg gcaagccggg gcgccacgat ccccagaagc cgacctcggc 2640 gcgtggaaaa agtcagcagt aaaaccacgc cgacacttgg tgcctgacgg atacccggtc 2700 tactgcaatt tgcctgttaa tcgaccaatc tgtgattaca acattcctga tgaacccctc 2760 ttaggcattc taccaccagc acagagtgaa tttgaatatg caccaacggt gtggggtcct 2820 gaagcatttg ccaaatcttt tgaaaaattt gactatgcac cttattgtga ctttgagagg 2880 gactatcctg agtgcacaca atttgctgat tgggcatgga gagtccatca ctcctacctt 2940 gaagacacta aagtcatcca tatctcagcc acagagaaaa atcttgattc aacaccagct 3000 tatccaaaaa tgttagacta cgaaacagaa gaagacttct tggatgagca tggctgggat 3060 ccttatgtgt ctgccttttc agcaattgat agaggatacc aacctgatgt actctggtac 3120 tgtttcctta agaaagaaat cttaaagaaa aagaaaatag aggactcaga catcagacaa 3180 atagtgtgtg cagatccaat ctatgctaga ataggtgcat gctttgaaca acatcagaat 3240 catcttacaa aattgcacac agaaacaaaa tcgggacaat gtggatggtc cccattcaat 3300 ggtggcttca ccaggctgtg tgaacggctt gagtcaaaac caggtgtatt tgtggagctt 3360 gactggacca ggtttgatgg aacaatccct gctcctctcc ttaaaaggat caagaagctc 3420 cgcttttcaa tgctttgtga agaacatcag aaaagatatc aacatatcta tgcctggtat 3480 gtgaaacaac tgctcaatcg gtttgtcatg atgccgagtg gcgaagtcac caagcagaca 3540 agggggaacc cttctgggca aatatcaaca acaattgaca acaacatggt gaacatctgg 3600 cttcaggcct ttgagttctg ctggttcttt ggaccggata aagaattgtg gagggactat 3660 gacaccatcg tctatggaga cgacagattg acccgttatc caatcttgcc agaaaattac 3720 aaagaaaagg gtacaatcca cctctacaag agtgtctttg gaatgtggaa taaaaccaga 3780 aaagtgaaga cctcagagac acttgaaggc ctgacattct gtggatttac agttggccca 3840 gatagactgc cttaccccac tgatgaagag aaactctatg ctggacttgt tacacctgca 3900 agaaagctcc ctgatgtcac agcgctgcat gggaaactcc tgagcctaca acttctgatg 3960 cataatcatc ctgacagtgc ctttaaagat tacatcaaca aatgtttggc tgaaacagcg 4020 aggcacgccg aggatctgcc tgcaagactc acagaaaggc agatggacag gctttggagg 4080 ggcggaccaa agcataagcc taatggctaa caaccagaaa aatgtccaac ccaaggtggt 4140 cacgactacg acgacgacta ctagtcgtcg tcgtgggcgt cgccgccggc gcactcctcg 4200 cacagctaca tctagtaaga ccactgttag gaaggtggca gttcttggac aatctcgtag 4260 gcctcctcgt cgccgcttta ataggcctgg caattctaat caacccagcg gctcaacctt 4320 caaacaaaga ataacagcta cattgggcac aattgggtca aatcagggta atacaattga 4380 gttagaagcc tcagttctat taaatccagc tcttatgaag gaaacaacag gttcaaatgc 4440 ctttggccct ctgcaaatgt atgccgcaaa ttacagtctg tggcgtgcaa gagatattac 4500 agttaagttg acacctttga ttggtgggtc tgcagtatca gggacagcaa ttcgcacatc 4560 attgaatctt tcagcccagc caggatcccc atcatggtct gctcttggtg cacgtcgtca 4620 tcgtgacacc aatccaggtc gtccgatggt aatgcgcatt ccaggaaatg caattcttgg 4680 ccaaaagaag ggctggttct tatgtaacac aaagaatgat cctatgatgt gcattgctgg 4740 atcaattgaa atccatactc ttgggaagac actttcagct tacagaaatg aagattttac 4800 aggcccactt ttccttgcag agttgacagc cacatgggaa tttaagaact ataatcctga 4860 acctggtatg ctaaatttgg tgaagacaaa gacatcagaa caaccacaaa ctataaaaat 4920 tcattcaaaa ccaggtgacc caatacttat ctcagtgcca agtgactcac aaatggcccg 4980 tacagtagcg caggtaagta ctgcagcaga ctcttcagca tctgagatag tatggcaaat 5040 ttgtgatgct actgcaatgg ttgttgaagg cttactccct caaccctttg agtggttgtt 5100 caaggcagga tggtggtttg ttaagaagat tgcaaataag agtcagaata gaaataggcc 5160 tggtgagcca gaccctggtg agcttacctt tcaggtcttc caaagtattt ctgatgcaca 5220 gaatggggtt ccctgcattg caactggtaa tgcatctagc acaaatgccc gaattactaa 5280 cttagaaatg atgcaaataa cacctggcaa cttgggaaat gcacaagtct cacctgcatc 5340 tatggggagg tctggaaacc ctacaaccaa tccaattaca attgtttgtc catccatgct 5400 tagtcaacct cccatttatg caacattgtg caccaaacca ccattgaatt gcatcgccat 5460 gcagggtctg ggtcaacata aacggaaggt tcattcatac tcaatacatg aactaagtga 5520 tccctccttc tttcaagatg gcaatgtagt tgatccactt actataccag ctgatgtgta 5580 tccaatttat aagaaagtgg ctagtgaata cacaccaatt ggggaagtct atgcagcatc 5640 ttatgccaaa cttaataatg accccctaca ttggactctg tgtctctgga gagcaacagt 5700 cacaactgag atcaagatgc aaggaatggg tgagcgggta gaccagttct tctttattca 5760 accaaacatt gagcaggatc cagcccgttt gccaagattt acacaacagg ttcgcgcaac 5820 taaccaaaaa tctactggac aagaacctat taatgtgtct gttgggaagt ggtatttaac 5880 tgtctttgca tcatacagag gaacacagtc ttacaacaat aatggggtca attattttgt 5940 tgacacccag ttgatttctg gtggatcttt gcagattgac ccaggttttg atgcataccc 6000 tgcgggtgca gtgctcacta cagcccaacc acttcagttg aatattccag tggcaccaac 6060 aacactgaca actagagaga ttctagcctt tagagagatg gtgaatgctc aaagctctcc 6120 gtttccactt cctccaccac catcggaata tgacaatctt gaaatgccac ctctggaggg 6180 ggaagaagaa gaagaacaag gagccattgg agaccctact cccctggagg aagccaacca 6240 acagagaatt agaggaccag cagcaattat aaaaatgaac cctgagtcag ctcttgatgt 6300 caaaaactgg gttgaatttg gccacagaaa gaggccaccc acaccctttt caccaataga 6360 ggaagaagaa gaagaagatt ctgatttaga tgatgatgat tatgctgaac ctcctgaaat 6420 aattaaaaat ttacttactc ctgaagctaa ggatctttat ggtgatctga gacgcaaggg 6480 tctcagtcat gagcaggcaa ctagagctgc ccaagccgca ttcccccaca tggcacttga 6540 agcgtgggag gcggcatacc ataatgccat ggctgatgga ctctcaccac ccacagcgcg 6600 agattgcgcg tggagtgcag tttcagattt cctttcctaa tctgttcagt tttttcttgt 6660 tttctctttt ctgaattaga ttagaattag catttaaaaa tttgagc 6707 //