Dbfetch
ID JQ326270; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC JQ326270; XX DT 10-OCT-2012 (Rel. 114, Created) DT 10-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Bhendi yellow vein mosaic virus isolate OYDWR1 segment DNA-A, complete DE sequence. XX KW . XX OS Bhendi yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RA Venkataravanappa V., Lakshiminarayanareddy C., Jalali S., Krishnareddy M.; RT "Molecular genetic diversity of Begomoviruses infecting okra in India"; RL Unpublished. XX RN [2] RP 1-2744 RA Venkataravanappa V., Lakshiminarayanareddy C., Jalali S., Krishnareddy M.; RT ; RL Submitted (29-DEC-2011) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake Po, Bangalore, Karnataka 560089, India XX DR MD5; 148b9438a9a670785225c4ca78faaea9. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Bhendi yellow vein mosaic virus" FT /segment="DNA-A" FT /lab_host="okra" FT /isolate="OYDWR1" FT /mol_type="genomic DNA" FT /country="India:Dharwad, Karnataka" FT /collected_by="Venkataravanappa" FT /collection_date="2006" FT /db_xref="taxon:120168" FT gene 121..486 FT /gene="AV2" FT CDS 121..486 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:C3TUJ5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C3TUJ5" FT /protein_id="AFU61972.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT ETQNVPDVQKSGCSKGM" FT gene 281..1051 FT /gene="AV1" FT CDS 281..1051 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D3HIP1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D3HIP1" FT /protein_id="AFU61973.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(629..985) FT /gene="AC5" FT CDS complement(629..985) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="GOA:K4HYJ1" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:K4HYJ1" FT /protein_id="AFU61974.1" FT /translation="MGTSHIKHQRILRMILVFSCLLLVVNNIIVNPDKLLDQRLFLTRI FT LTTSNGCMPFPQHLVPIPMHVLNGGRTGLVIKHIKYFTKILWFICRSSITNKEKHHRIR FT MVLGLDVLVHPYLT" FT gene complement(1054..1458) FT /gene="AC3" FT CDS complement(1054..1458) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:K4IAX6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4IAX6" FT /protein_id="AFU61975.1" FT /translation="MDSRTGARITAAQAKNGVYIWKVPNPLYFKILNHDNRPFTTNMDI FT ITVRIHFNYNLRKALGIHKCFLTFRIWRTLHPPTGLLLRVFKTQVLKYLNNLGVVSINL FT VIKAVEHVLYNVINQTMYVDQYSDIKFKLY" FT gene complement(1151..1603) FT /gene="AC2" FT CDS complement(1151..1603) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:K4I2B6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4I2B6" FT /protein_id="AFU61976.1" FT /translation="MQHSSFSPNRCTRVPIKVQHREAKRPIRRRRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSSKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNSKDPFQLQP FT TESSGNTQVFSNLPNLEDLTPSDWSFVKGIQNPSPQISQQSRCSLN" FT gene complement(1500..2588) FT /gene="AC1" FT CDS complement(1500..2588) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:K4HY10" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4HY10" FT /protein_id="AFU61977.1" FT /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQFLNLQTPVNKKFIRI FT CRELHEDGNPHLHVLIQFEGKYQCRNNRFFDLTSPSRSAHFHPNIQGAKSGSDVKSYID FT KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDYVLQFHN FT LNANLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENVMDAAARPLRPLSLVLEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEEKNSALKAWALKNAAFVFLTEPLY FT SGTNQSTAQGSEETHQEEESRS" FT gene complement(2132..2434) FT /gene="AC4" FT CDS complement(2132..2434) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4HZK4" FT /protein_id="AFU61978.1" FT /translation="MGILICMFSSSSKESTSAGTIDSSTSPPQVGQHISIRTFRELNQA FT QMSSPTSTRTETPSNGESFRSMDDLQEGDSRQPTTLTPQHLTQAVSQRLLESLGS" XX SQ Sequence 2744 BP; 740 A; 544 C; 643 G; 817 T; 0 other; accggatggc cgcgcgattt ttttaagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctcct tcgactataa gtacgtgcgc aataagtttc aattcaaaaa 120 atgtgggatc cactattaaa tgaatttccg gatacggttc acgggtttcg ttgtatgcta 180 tctgtaaaat atttgcaact tttgtcgcag gattattctc cagatacact tgggtacgag 240 ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg gcagcccata 360 caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag 420 gcctatgaac aggaaaccca gaatgtaccg gatgtacaga agtccggatg ttccaagggg 480 atgtgagggt ccctgtaagg tacagtcgtt tgaatctcga cacgatgtcg ttcatattgg 540 taaggtaatg tgtatttcgg atgttacgcg tggagtcggt ttgacccatc gtataggtaa 600 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg agaacatcaa 660 gaccaagaac catacgaatt cggtgatgtt tttccttgtt cgtgatcgac gaccgacaga 720 taaaccacaa gattttggtg aagtatttaa tatgtttgat aacgagccca gtacggccac 780 cgttaagaac atgcataggg atcggtacca ggtgttgagg aaatggcatg caaccgttac 840 tggtggtcaa tatgcgagta aggaacaggc gttggtcaag aagtttgtca gggttaacaa 900 ttatgttgtt tacaaccaac aggaggcagg aaaatacgag aatcatacgg agaatgcgtt 960 gatgctttat atggcttgta cccatgctag taacccagtt tatgctactc ttaagattcg 1020 gatatatttt tatgactctg taacgaattg aaattaataa agtttgaatt ttatatctga 1080 atattggtct acatacattg tttgattaat tacattgtac aatacatgtt caacggcttt 1140 aataactaaa ttaattgaga ctacacctag attgttgaga tatttgagga cttgggtttt 1200 gaataccctt aacaaaagac cagtcggagg gtgtaaggtc ctccagattc ggaaggttag 1260 aaaacacttg tgtattccca gagctttccg taggttgtag ttgaaatgga tccttactgt 1320 tattatgtcc atgttcgtcg tgaatggacg gttgtcgtgg ttgaggatct tgaaatagag 1380 gggatttgga accttccaga tatagacgcc attctttgct tgagctgcag tgatgcgtgc 1440 ccctgtgcga gaatccatgg ttgtggcagt tgatagagag ataataagaa cacccgcatt 1500 caagatctac tctcctcctc ctgatgggtc tcttcgcttc cctgtgctgt actttgattg 1560 gtacccgagt acaacggttc ggtgagaaag acgaatgctg cattttttaa agcccacgct 1620 ttcaaagctg agttcttttc ctcgtccaag aactctttat agcttgcgtt ggggcctgga 1680 ttgcagagga agattgttgg aatgccgcct ttaatttgaa ctggcttccc gtacttggtg 1740 tttgattgcc agtccctttg ggcccccatg aattctttaa agtgtttcag ataatgcggg 1800 tcaacgtcat ctataatgtt gaaccacgca tcgtttgaat acactttagg gcttagatct 1860 aggtgaccgc acaaatagtt atgtgggcct aatgacctag cccacatagt tttgcccgta 1920 cgactatctc cctctaagac taaactcaaa ggtctcagag gccgcgcagc ggcgtccatg 1980 acgttttccg atacccattc ctcaagttct tctggaactt gatcgaaaga agaagataaa 2040 aaaggagaaa cgtaaacctc caagggaggt gtaaaaatcc tatctaaatt ggcatttaaa 2100 ttatgaaatt gtaagacata atccttaggt gctaactccc taatgactct aagagcctct 2160 gacttactgc ctgcgttaag tgctgcggcg taagcgtcgt tggctgtctg ctgtccccct 2220 cttgcagatc gtccatcgat ctgaaactct ccccattcga gggtgtctcc gtccttgtcg 2280 atgtaggact tgacatctga gcctgattta gctccctgaa tgttcggatg gaaatgtgct 2340 gacctacttg gggaggtgag gtcgaagaat ctattgttcc tgcactggta ctttccttcg 2400 aactggatga gaacatgcag atgaggattc ccatcttcat gaagttctct gcagattcta 2460 atgaattttt tgtttactgg ggtttggaga tttaagaatt gggaaagtgc ttcttcttta 2520 gtcagggagc acttgggata agtaaggaaa taatttttgg aatatatttg aaagcgttta 2580 gaaggcatgt tgactaaatt gagtaccgat tgactcgctc tggcaactct ctctggtata 2640 tcggtaccca atatatagtg agtaccaaat ggcataaatg taaataaaat aactttaatt 2700 tgaaattcaa aggaaaaggc taacgcggcc atccgtctaa tatt 2744 //