ID JQ319720; SV 1; linear; genomic RNA; STD; VRL; 6311 BP. XX AC JQ319720; XX DT 25-JUL-2012 (Rel. 113, Created) DT 25-FEB-2016 (Rel. 127, Last updated, Version 2) XX DE Ribgrass mosaic virus strain FSHS isolate U597, complete genome. XX KW . XX OS Ribgrass mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RC Publication Status: Online-Only RP 1-6311 RX DOI; 10.1186/s12985-016-0487-5. RX PUBMED; 26891841. RA Chavan R.R., Pearson M.N.; RT "Molecular characterisation of a novel recombinant Ribgrass mosaic virus RT strain FSHS"; RL Virol J 13(1):29-29(2016). XX RN [2] RP 1-6311 RA Chavan R.R., Pearson M.N.; RT ; RL Submitted (26-DEC-2011) to the INSDC. RL School of Biological sciences, University of Auckland, Thomas Building, RL Private Bag 92019, Symonds street, Auckland, North Island 1142, New Zealand XX DR MD5; 14ecc2b0a58118a4116b72f58d33f347. DR EuropePMC; PMC4758180; 26891841. XX FH Key Location/Qualifiers FH FT source 1..6311 FT /organism="Ribgrass mosaic virus" FT /host="Plantago major" FT /strain="FSHS" FT /isolate="U597" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collected_by="Ramesh R. Chavan" FT /collection_date="22-Feb-2011" FT /identified_by="Ramesh R. Chavan and Mike N. Pearson" FT /note="group: Virgaviridae; subgroup: Tobamovirus subgroup FT 3" FT /db_xref="taxon:51680" FT 5'UTR 1..67 FT CDS 68..4873 FT /codon_start=1 FT /transl_except=(pos:3389..3391,aa:Tyr) FT /product="RNA replicase readthrough component" FT /note="translated by readthrough" FT /db_xref="GOA:I6ZB83" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6ZB83" FT /protein_id="AFN80475.1" FT /translation="MAQFQQTVHMQTLQAAAGRNSLVNDLASRHVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAVQSYISRLERQRRPVPGYQ FT RAAFNNYAENPRFVHCDRPFQQCELTTANGTDTYAVALHSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDKLSFFFHNESTLNYTHSFNNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWE FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITSGKMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQKFDRSTKELIWTSLCDALVGVIPSVKETLVRGGFVKVAEEALEI FT KIPELYCTFSDRLVLQYKRAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKSVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKVEEAKSAEHNDVLSLR FT NDAPYPCVKNLVEGSVPAYGMCPKGGGFDKFDVDIADFHLKSVDAVKRGAMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGADPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDEGKPVCDETWFRVAVSSDSLVYSDMGKLKTLTSCCLD FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANHAGVMRA FT DKDNVRTVDSFLMHPPRRVFKRLFIDEGLMLHTGCVNFLLLLSHCDVAYVYGDTQQIPF FT ICRVANFPYPAHFARLAVDEKEVRRTTLRCPADVTFFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGAFNPITLPLEGKILTFTQADKFELLEKGYADVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCRYYTVVLDPMVNVISEMEKLSNFILDMYKVEAGIQ FT YQLQIDAVFKGTNLFVQTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNV FT KDCRIDFSKSVQIPKEQPSFLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTID FT IEDTASLVAEKFWDAYIDKEFSGTNKMSLTRESFSRWLSKQESFTVGQLADFNFVDLPA FT VDEYKHMIKSQPKQKLDLSIQDEYHALQTIVYHSKKINAIFGRMFAELTRMLLERVDSS FT KFLFYTRKTPGQIEEFFSDLDSTQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDE FT WLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVSTFIGNTIIIATCLSSMIPMDKVI FT KAAFCGDDSLVYIPKGMDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVY FT YDPLKLISKLGCKHIRDAVHLEELRESLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGS FT FAFCSIVKYLSDKRLFKDLFFV" FT CDS 68..3391 FT /codon_start=1 FT /product="RNA replicase component" FT /note="contains capping methyltransferase and RNA helicase FT domains" FT /db_xref="GOA:I7AG56" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I7AG56" FT /protein_id="AFN80476.1" FT /translation="MAQFQQTVHMQTLQAAAGRNSLVNDLASRHVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAVQSYISRLERQRRPVPGYQ FT RAAFNNYAENPRFVHCDRPFQQCELTTANGTDTYAVALHSIYDIPVEEFGSALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDKLSFFFHNESTLNYTHSFNNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWE FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITSGKMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQKFDRSTKELIWTSLCDALVGVIPSVKETLVRGGFVKVAEEALEI FT KIPELYCTFSDRLVLQYKRAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKSVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKVEEAKSAEHNDVLSLR FT NDAPYPCVKNLVEGSVPAYGMCPKGGGFDKFDVDIADFHLKSVDAVKRGAMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGADPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDEGKPVCDETWFRVAVSSDSLVYSDMGKLKTLTSCCLD FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANHAGVMRA FT DKDNVRTVDSFLMHPPRRVFKRLFIDEGLMLHTGCVNFLLLLSHCDVAYVYGDTQQIPF FT ICRVANFPYPAHFARLAVDEKEVRRTTLRCPADVTFFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGAFNPITLPLEGKILTFTQADKFELLEKGYADVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCRYYTVVLDPMVNVISEMEKLSNFILDMYKVEAGIQ FT " FT CDS 4876..5679 FT /codon_start=1 FT /product="movement protein" FT /note="intercellular transport of virus" FT /db_xref="GOA:I7A7B2" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:I7A7B2" FT /protein_id="AFN80477.1" FT /translation="MSMVSYEPKVNDFLFLTNKEKILPKALTRLKTVSISTKDVISVKE FT SETLCDIDLLIDVPLDKYRYVGILGAVFTGEWLVPDFVKGGVTISVIDKRLVNSKECVI FT GTYRAAAKSKRFQFKLVPNYFVSTADAKRKPWQVHVRIQDVKIEAGWQPLALEVVSVAM FT VANNVVMKGLREKIIAISDPDGEGFEGVVDEFVDSVEAFKAVDNFRKKKRKIGEKEVVS FT RNKYRPEKHAGPNSLYIKEENVLQHHELESVPVLRSGVGRTYTNA" FT CDS 5603..6076 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein" FT /db_xref="GOA:F5A0S2" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:F5A0S2" FT /protein_id="AFN80478.1" FT /translation="MSYNITSSNQYQYFAAVWAEPTPMLNQCVSALSQSFQTQAGRDTV FT RQQFSNLLSAIVAPNQRFPDTGFRVYVNSAVIKPLYEALMKSFDTKNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGYMNRAEFEAIVPWTTAPAT" FT 3'UTR 6077..6311 XX SQ Sequence 6311 BP; 1819 A; 1169 C; 1600 G; 1723 T; 0 other; gtttagtttt attgcaacaa caacaacaaa atacaataac aacaaacaaa atacaaacaa 60 caacaacatg gcacaatttc aacaaacagt ccacatgcaa actctccaag ctgctgcggg 120 acgcaacagt ttggtgaatg atttggcttc tcgtcatgta tatgacaacg cggttgagga 180 gctgaatgct cgttccaggc gtcccaaagt tcatttctcc aaagcagtgt ctacggaaca 240 gaccctgatt gcaacaaatg cttatccgga gtttgagatc tctttcactc acacgcaatc 300 tgcggtgcat tctttggccg gaggccttag atcgctagag ctggagtatc tcatgatgca 360 agttccattt ggatctctga cgtatgatat cggcggtaac tttgctgcgc acctgttcaa 420 agggcgcgat tacgtgcact gctgtatgcc taatctagat gtgcgtgata ttgctcgtca 480 cgagggacac aaggaagccg ttcaaagtta cattagtcgc ctcgaaaggc agcggcgtcc 540 tgttccagga tatcagaggg cagctttcaa caactacgcg gagaatccac ggttcgttca 600 ttgcgaccgt ccgtttcaac agtgtgaatt gacgacagca aacggtactg atacctacgc 660 tgtagcgctt catagtatat atgatatccc tgttgaagag tttggttcag cgcttctcag 720 gaagaacgtt aagacttgtt tcgcagcttt ccactttcac gagaatatgc ttctcgattg 780 tgacactgtt acactcgacg aaatcggggc aactttccag agagcaggcg acaaactaag 840 ttttttcttt cacaatgaga gcactcttaa ttatacccat agctttaata atataattaa 900 atatgtctgt aaaacgttct ttccggctag tcaacggttc gtgtatcata aggagttctt 960 agttactaga gttaatactt ggtattgtaa gtttactaga gtagatactt ttactctttt 1020 ccgtggtgtg tatcataata acgtggactg cgaagagttt tacaaggcta tggacgatgc 1080 gtgggagtac aagaagacgc ttgcgatgct taatgctgaa agaactatct tcaaggataa 1140 tgcagcgtta aacttttggt tcccgaaagt gagagatatg gtcattgttc ctctttttga 1200 cgcatctatt acgtctggaa agatgtctag aagagaggtt atggtgaata aggatttcgt 1260 ttatacggtc ctcaaccata taaagacgta ccaagccaaa gctttaactt acgcgaacgt 1320 tttgtccttt gtcgagtcga ttaggtcaag agtcataatt aacggtgtca ctgccaggtc 1380 tgaatgggac acagacaagg cgattctagg tcctttagca atgacatttt tccttataac 1440 aaagttgggt catgtgcagg atgaaataat cctgaaaaag ttccagaagt ttgacagatc 1500 taccaaagag ctaatttgga ctagtctctg cgatgcccta gtaggggtta ttccctcggt 1560 caaggagact ctcgttcgtg gtgggtttgt gaaggtagcg gaagaggcct tagagattaa 1620 aatccctgaa ttgtactgca cgttttccga tagattggtg ctgcagtata aaagggcgga 1680 agagttccaa tcgtgtgacc tttctaaacc tctagaagaa tctgagaagt actacaatgc 1740 gttatctgag ctgtcagtgc tcgagaatct cgattcattc gatttagagg cgtttaaaac 1800 cttgtgtcag cagaaaagcg tagatccgga tatggctgct aaggtagtgg tggcaattat 1860 gaagtgtgaa ttgacgttgc ctttcaagaa gcctactgaa gaggaaatct cagaatcact 1920 taaggtcgag gaggcgaaaa gtgcggagca taacgatgtg ttgagcttgc gaaatgatgc 1980 tccttacccg tgtgtgaaaa atctcgtaga gggttctgta ccggcttacg gaatgtgtcc 2040 gaaaggtggt ggtttcgaca agttcgatgt ggacattgcc gattttcatc tcaagagtgt 2100 agatgcagtg aaaagggggg ctatgatgtc cgcggtgtat acagggtcga ttaaagttca 2160 acagatgaag aactatatcg attacttaag tgcgtcgctg tcagctactg tttccaacct 2220 ctgtaaagtg cttagggatg ttcatggcgc tgatcctgaa tcgcaggaga aatctggagt 2280 gtgggatgta agaagaggac gctggttgct caaaccgaac gcgaaaagtc acgcttgggg 2340 agttgcggaa gatgccaacc acaagttggt tatagtattg cttaactggg atgaggggaa 2400 accagtttgc gacgagacat ggttcagggt agctgtgtcg agcgattctt tagtgtactc 2460 tgatatggga aaactgaaga cgctgacgtc ttgctgtctg gatggagaac ctccggagcc 2520 gaacgcaaag gtgattttgg ttgacggtgt acctggctgt ggaaagacga aggagattat 2580 cgaaaaggtg aatttctctg aggacttgat tttagtccct gggaaggagg cttcgaagat 2640 gatcatcaga agggcaaatc acgctggtgt gatgagagca gataaagata acgtaagaac 2700 ggtggattcc ttcttgatgc accctccgag gagagtgttt aagaggctat tcatagacga 2760 agggttgatg cttcacactg gttgtgttaa ctttttgcta ctgctgtcgc attgtgacgt 2820 ggcgtacgta tacggggaca cacaacagat tccgtttatc tgtagagtcg cgaatttccc 2880 gtatcccgca cattttgcaa gacttgcggt ggacgagaag gaggtcagaa gaaccacgct 2940 gagatgtccc gctgatgtca cgtttttcct gaataagaag tatgacgggg cggtgatgtg 3000 tactagcgcc gttgagagat ctgtgaaggc agaagtggtg agagggaaag gtgcttttaa 3060 cccgataact ttaccgttag agggaaaaat tttaaccttt acacaggctg acaagttcga 3120 gttgctggaa aagggttacg cggatgtgaa cacagtgcat gaagtgcaag gggaaacata 3180 cgagaagact gccattgttc gattgacatc gactccgtta gagattatat caagagcatc 3240 accgcatgtt ttggtggcgc tgacaagaca cacaacgcgc tgtcggtatt acactgtagt 3300 gttggatccg atggttaatg tgatctcaga aatggagaag ttgtcgaatt ttatcctcga 3360 tatgtacaag gtcgaagccg gcatccaata gcaattacag atagatgcag tattcaaggg 3420 aacgaatttg ttcgttcaga cacccaagtc aggcgattgg cgagatatgc aattctatta 3480 tgacactctt cttcctggaa acagcactat tctcaatgaa tttgacgctg ttactatgaa 3540 tttgagggat atttccttaa acgttaagga ttgcagaatc gacttctcca aatccgtgca 3600 aattcccaag gaacagccta gttttctcaa gcctaaaata agaaccgcag cagaaatgcc 3660 aagaacagca ggcttacttg aaaatctagt tgctatgatt aaaagaaaca tgaatgcacc 3720 ggatctaact gggacgatag acatagagga tactgcatca ctggtagccg aaaagttttg 3780 ggatgcttac atcgacaaag aattcagtgg aacgaataag atgtccttaa ctagggaaag 3840 tttttctaga tggctctcta aacaagagtc gtttacagtt ggtcagctag cggatttcaa 3900 ctttgtagat ttgccggcag tggatgagta caagcatatg atcaagagcc aacctaagca 3960 gaagttagat ttaagtatcc aggatgaata tcatgcatta cagacaatag tctatcactc 4020 aaaaaagatc aatgcaattt tcggtcggat gtttgcggaa cttacgagga tgctgcttga 4080 gagggtagac tcttcgaagt ttctgtttta cacgagaaag acacctgggc agatagaaga 4140 atttttctct gaccttgatt caacccaggc aatggaaatt ctggaactcg acatttcaaa 4200 gtacgacaag tcacaaaacg agtttcattg cgctgtagag tataagatct gggaaaaact 4260 tgggatagac gagtggttag ctgaggtgtg gaagcaggga cacaggaaga cgactttgaa 4320 ggactataca gctggaatca aaacatgttt atggtaccaa aggaaaagtg gtgatgtgtc 4380 aacctttatc ggtaacacta ttatcattgc aacctgtctg agttcgatga ttccaatgga 4440 caaagtaatc aaagcagcct tttgcggtga cgacagttta gtttatattc ctaaaggaat 4500 ggacttgcct gatattcagg ccggtgcaaa ccttatgtgg aatttcgagg cgaagctttt 4560 caggaaaaag tatggttact tctgtggtcg gtacgttatt caccatgata gaggagcaat 4620 tgtatattac gatccgctca aactaatatc taagttaggt tgtaaacata ttagagatgc 4680 agttcattta gaagagttac gcgagtcttt gtgtgatgta actagtaact taaataattg 4740 tgcgtatttt tcacagttag atgaggccgt tgccgaggtt cataaaaccg cggtaggcgg 4800 atcgtttgct ttttgtagta ttgttaaata tttatcagat aagaggttgt ttaaagattt 4860 gttttttgtt tgataatgtc gatggtttcg tacgaaccga aggtgaatga tttcctcttt 4920 ctcacgaata aggaaaagat actcccgaag gctttgacga gattgaagac cgtgtctatt 4980 agtactaagg atgtaatatc tgtcaaggag tctgagactt tgtgtgatat tgatttgtta 5040 attgatgtgc cattagataa gtatagatat gtgggtattt taggagctgt ttttacaggt 5100 gagtggcttg taccagactt tgtcaagggt ggcgtaacaa taagcgtgat agacaagcgt 5160 ctggtgaact ctaaggagtg tgtgatcggt acgtacagag ctgcagccaa aagtaagagg 5220 ttccagttta agctggttcc gaattacttt gtgtctactg ctgacgcgaa aaggaaaccg 5280 tggcaggttc atgtacgtat tcaagatgta aagatagaag caggttggca accgttggcc 5340 ctggaagtag tatccgttgc tatggtcgcc aataatgtgg ttatgaaggg tttgagagaa 5400 aagatcatcg cgataagtga tccggacggc gaagggttcg aaggcgtggt tgacgaattc 5460 gtcgattcgg ttgaagcatt taaagcggtt gataatttca ggaaaaagaa aagaaagata 5520 ggagaaaagg aagtggtaag taggaataaa tatagaccgg agaagcacgc cggtccgaat 5580 tcgttatata ttaaagaaga aaatgtctta caacatcacg agctcgaatc agtaccagta 5640 cttcgcagcg gtgtgggcag aacctacacc aatgcttaat cagtgcgtgt cggcactgtc 5700 acagtcgttt cagacacaag cagggagaga cactgttaga cagcaattct caaacttgtt 5760 gagtgcgatt gtggcgccga accagcggtt cccagataca gggttccggg tatatgttaa 5820 ctcggcagtt ataaagccgt tatacgaggc tctgatgaag tcttttgata ctaagaatag 5880 gatcattgag accgaagagg agtcacgccc gtcagcgtct gaggtagcaa acgcaacaca 5940 gcgtgttgat gatgcaaccg tcgccattag aagtcaaatt cagcttctgc tgaatgagct 6000 ttcaaacgga cacggttata tgaacagagc ggagttcgag gctatagtgc cttggactac 6060 ggcacctgct acttaagcgt ggtgtgcacg atagcacaca gtgtttttct ctccacttaa 6120 atcgaagaga tatacttacg gtgtaattcc gcaagggtga cgtaaaccaa attacgtaat 6180 gttttgggtt ccatttaaat cgaaacccca tatttcctgg atcacctgtt aacgcacgtt 6240 ggacgtgtat tacagtggga atatgtaaaa gtgagaggtt cgaatcctcc ctaaccccgg 6300 gtaggggccc a 6311 //