ID JQ316470; SV 1; linear; genomic RNA; STD; VRL; 6916 BP. XX AC JQ316470; XX DT 22-JUL-2012 (Rel. 113, Created) DT 28-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE Swine pasivirus 1, complete genome. XX KW . XX OS Pasivirus A1 OC Viruses; Riboviria; Picornavirales; Picornaviridae; Pasivirus. XX RN [1] RP 1-6916 RX PUBMED; 22787214. RA Sauvage V., Ar Gouilh M., Cheval J., Muth E., Pariente K., Burguiere A., RA Caro V., Manuguerra J.C., Eloit M.; RT "A member of a new picornaviridae genus is shed in pig feces"; RL J. Virol. 86(18):10036-10046(2012). XX RN [2] RP 1-6916 RA Sauvage V., Ar Gouilh M., Cheval J., Eloit M.; RT ; RL Submitted (22-DEC-2011) to the INSDC. RL Laboratory for Urgent Response to Biological Threats (CIBU), Institut RL Pasteur, 28 rue du Dr Roux, Paris 75724 CEDEX 15, France XX DR MD5; f614bc0a64926d1c109c60019b80ba41. DR EuropePMC; PMC3446573; 22787214. DR EuropePMC; PMC4376133; 25726971. DR EuropePMC; PMC4635496; 26018961. DR EuropePMC; PMC5805886; 29439048. XX FH Key Location/Qualifiers FH FT source 1..6916 FT /organism="Pasivirus A1" FT /host="Sus scrofa" FT /mol_type="genomic RNA" FT /country="France" FT /isolation_source="porcine stool" FT /collection_date="2010" FT /db_xref="taxon:1511784" FT 5'UTR 1..378 FT CDS 379..6780 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:I6YQK4" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR009419" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:I6YQK4" FT /protein_id="AFN70966.1" FT /translation="MDVVVDTLTKEVSQTLLGDTAESGGGFGGVLSGSATTNAANIVQH FT SAAPTAPANPVLDANDPYEACAYSKETSRETPSKMVLLDIVHFDNTWVWGGNDKLQLPL FT PKCFWKNRSFPAYGTSRYFQFFRGSFHIKIQVNAAAGSAGSFVVVYVPNDHYQSWNNKD FT LILHTMFNWPHVIFNVATMTEADLYIPYINTHNLANTDSSDCGWVVVTPFTHLEVASTT FT TNTLDIAVFGSLVDFQFQGPRPYTDLPSDSQGPKRVARNKKYKYTRNKIDIAEGPGSMN FT IANVLSTTAAQSIALVGERAFIDPSVAGTRVRVRTFRDVTKIKALPLLPFTASHSEYCI FT FDWQASHAPTTKSPIFGRGYKIRELGNLGPLSTAYQFWRGSIIFTLTIFASSFHRGRLR FT IVLFPNGTHSFSQDDANALIFTVCDIGEQSSFDITLPFTHYNWIRECDNSVVVLVNVYV FT ETRLAHNNASSNVIKCALFVRGGEDFEFLAPCGDTVKFHGWGSDMDEADPLDDMEPGHP FT DCLTLESKDGSSGKGPQCAQMAGLTSVENDGTTDNQLNCAAPKFINIHKLTTSIFAKDH FT MHLDYFFGRGWYVMKHNYEGESRAPFYIDVDAPSSMPGAAMNFFSFWAGEVNFHVVNNS FT DDPMAVTHSYSHEASTVGPAEGLGLIIVPPREMISFAAPFYSWSPLRTVLAHQNSAVKR FT TFGILKLVPEAPKGQVIVYASLRTPCFFLVKPFPIQTTAAKMAVYPSKLTSAEEAEELK FT FKLVHEPYEQFFIPHYGDIPSFQRDFINWLGSKEELQNMILQCGDVEQNPGPVLMYDGN FT KKFCVPVCNGYLTFHGSPEQFLVSGNGTLIIYKEVYGMLPYEEAYPEDLSSNWHIEWQC FT VNGKVDSLVKRMANWMLLRYIDLVIFGGTWRRLLAPNTDMKFDSQGVDDMMNSLTGLLN FT SSAMELLGNDVSKSILCCLVRFVAVLVMFFRNPDLINGVALASYLASEFSSVRLVSSQT FT AAFVDALFNGDLYKLSEQFLSMMDIGSDSDYKQLIKETLGSYPPEMNPFESQSLAAFNA FT LSLSARNCTWWIELFQKLHTFVRDLLKPDTSAKFHEWCRKNKMLISNFMYTLNEHLKDC FT ATTCNLRKREFRDKHKWLLSVLNRLTEGFTTYGVQNDITRALLDMRKSMLAVKLGQEYQ FT NTCAREEPLGVLLRGEPGQGKSFMTHLLVRSVCNAMGWKVSESVFSHPTSSEFFDGYAG FT QPIHLIDDFGQNVEEPEYKVLCQCMSSIPFSVPMASLEEKGLPYTSKLVIATTNKSDWS FT SRTLCAPGALKRRFPIVYTVRARRTLTKNGLLDVNAHMSAVRDGAAWEYTTNGYDWQPF FT SVNDLAAEIIKQLEQRRESFQLWNSFISQAPETFEAWCDDMVSLLGPAVPVASVFDYCA FT STGVVPMLKQASESVLKWFDSCVDSMVSFVTRNKKWIAFGALTMSVLGIAISMLKELDS FT QRPYNQTAHKMPVTKLTRGRRVLVSQGPYNEFQHYSKYCVFLHSGSITLHGLAFGGNSF FT LFYTHGLATLERYDNWVLDYNGSMFDLDIETVDELYLNGESMDLCLITCKPLPVTFASI FT VGHLSDGDLGDGVILWRGREGLTCMPIYDLHHYGTVTTNQGDTCTSAIRYRAKTTRGMC FT GGLVLSKISGTYKAVGLHVAGNGVYGVAASLSVCKQLESQGLVTDTKPWPGVRVHQPSK FT SVLKPSPLYGFVEQELHPAVLSPFDNRLKCEVDSVIGRQALKYNSNVFNPGPYYDEVLE FT AFAVDFNGRFGINEMMSAEEVFALSGDEAIELSTSPGLKYTSKGLRKRDLVPGGKACDL FT LLSDVERLMNDPKGTPVYFYCHLKDELRPQEKIEQGLTRCIESSDFDYVFSAKRVFCKL FT FRQLYDSDPIETGFAVGINCIADWKNLLDGMYDYIYDFDLKGYDGSIPRQLMIDACRVL FT SESCSDEELAYNLLHKTVDSQHVVGNQLLTVSGGMASGSPFTTIVNTACNILANMTVLE FT EEGVEYTLVCYGDDILVSTSDPISVNDYVDKMGQYFGFTVKLDGDYPKTKNNFTFLKRR FT TTYWNGIPVGAMEVGLLLQHLGYCRSVSVFQDQLNSASIELALHGPETYNVLRSRVNSF FT LNGTGFALMSYRRAAAVVGSMLS" FT mat_peptide 379..1137 FT /product="VP0" FT /note="capsid protein; uncleaved precursor of VP2+VP4" FT mat_peptide 1138..1869 FT /product="VP3" FT /note="capsid protein" FT mat_peptide 1870..2739 FT /product="VP1" FT /note="capsid protein" FT mat_peptide 2740..2790 FT /product="2A1" FT mat_peptide 2791..3126 FT /product="2A2" FT mat_peptide 3127..3501 FT /product="2B" FT mat_peptide 3502..4494 FT /product="2C" FT mat_peptide 4495..4764 FT /product="3A" FT mat_peptide 4765..4839 FT /product="3B" FT mat_peptide 4840..5412 FT /product="3C" FT /note="proteinase" FT mat_peptide 5413..6777 FT /product="3D" FT /note="RNA-dependent RNA polymerase" FT 3'UTR 6781..6916 XX SQ Sequence 6916 BP; 1709 A; 1331 C; 1648 G; 2228 T; 0 other; gcttttgacc agtggctctg ggttacttag ccaagtccct ttctcttatt ttcactagtt 60 tatgttgtgt gttgtctgtt ttgttttgtt taaattgtat acaagatcct tcccgccgac 120 acagacctcg acagtctggt gtaggagggt tggtgatatt aatttgcccc aaaagagtga 180 ccgtgatacg tggaaaccat gagtacatgt gtatccgtgg aggatcgccc gggactggat 240 tccatatccc attgccatcc caacaaacgg agggtatacc caccacgtgc gcgtttgcag 300 tgggaatctg caaatttagt catactgcct gatagggtgt gggcctgcac tttggggtac 360 tcaggctgtt catataatat ggatgttgtt gttgatactt taactaagga agtttctcaa 420 acgttgcttg gtgatactgc tgaatctggc ggaggttttg gtggtgttct ttcgggatca 480 gccaccacta atgcagcaaa tattgtccag catagtgctg ctcctacggc tcctgccaat 540 cctgttttgg atgccaatga cccttatgaa gcatgtgcgt actcgaaaga gacctcacgc 600 gaaactccgt ctaaaatggt tttgcttgac attgtgcatt ttgacaacac ctgggtatgg 660 ggcggaaatg ataagttgca attgccatta cccaaatgct tttggaagaa tcggtcgttt 720 cctgcttatg gcacatcacg atattttcag ttctttcgtg gttcgttcca tattaagatt 780 caggtcaatg ctgctgcagg ttctgccggt tcttttgtcg ttgtctatgt gccaaatgac 840 cattatcaga gttggaataa taaggatttg atactccata caatgtttaa ttggccacat 900 gtcattttta atgtggcgac tatgactgag gcagatttgt acattcctta cattaatacc 960 cacaatcttg ctaacactga ttcttctgac tgcgggtggg tggtagttac accttttacg 1020 cacttggaag tagctagcac cactactaat acactggaca ttgctgtttt cgggtctttg 1080 gttgattttc aattccaagg cccaaggcca tataccgatt tacctagtga ttctcagggg 1140 cccaagcgtg ttgcccgcaa taagaaatat aagtacacac gcaacaaaat tgatattgct 1200 gaagggcctg gatcaatgaa catcgccaat gtacttagca caacagccgc ccaatcgata 1260 gctttggttg gtgaacgtgc ttttattgat cctagtgttg caggcacgag agtgagagtc 1320 cgcacgtttc gtgatgtaac aaaaattaaa gcattacctt tgctaccgtt cacagcttca 1380 catagtgaat attgtatttt tgattggcag gctagccatg ctccaacaac caagtctccg 1440 atttttgggc gtggctataa gatacgagag cttggtaatt tgggtccatt gtcaacagcc 1500 tatcagtttt ggcgtggttc tattattttc actctcacca tttttgctag cagttttcac 1560 cgtggcaggc ttagaattgt cttgtttcca aatggaaccc acagttttag tcaggatgat 1620 gccaatgcgt tgatatttac tgtctgtgac attggtgaac aatcctcatt tgatattact 1680 ttgccattta ctcattacaa ttggattagg gaatgtgata attctgtagt tgtcctggtc 1740 aacgtgtatg ttgaaacccg attggctcac aataatgcat cttccaacgt tataaaatgc 1800 gcactttttg tgcgtggcgg cgaggatttt gagttcttgg cgccatgcgg tgacactgtc 1860 aagttccatg gttggggatc ggatatggat gaagctgatc ctttggatga catggaacca 1920 ggacatcctg attgtcttac attggaatct aaagatggga gtagtggtaa agggccccag 1980 tgtgcgcaga tggctggatt aacaagtgtg gagaatgatg gcacaactga taaccaactt 2040 aattgtgcag cacctaagtt tatcaatatc cataagctga ctacttcaat atttgccaaa 2100 gatcatatgc accttgatta tttctttggt cgtggatggt atgtcatgaa acataactat 2160 gagggcgaga gccgtgcccc tttttatatt gatgtggatg ctccatcgtc tatgccaggc 2220 gctgcaatga atttcttttc tttctgggct ggggaggtta acttccatgt tgtcaacaat 2280 agtgatgacc caatggctgt cactcatagt tattcgcatg aggctagcac tgttggtccc 2340 gctgaaggtc tagggttgat aattgtgccg cctcgtgaga tgatatcatt tgcagcccct 2400 ttctattcct ggtcgccatt gcggactgtg cttgctcacc aaaatagtgc agttaagcgc 2460 acgtttggca ttttgaagtt agtgcctgag gctccaaaag gacaggtcat tgtttatgca 2520 tcacttagaa ctccatgctt cttcttagtc aagccatttc ctatacagac aactgcagct 2580 aagatggctg tgtatccatc aaagctgaca tcagctgagg aggcagagga gctaaagttc 2640 aaattggtgc atgagcctta tgagcagttt tttatccccc attatgggga tattcctagt 2700 tttcaaaggg attttattaa ttggctaggc agtaaagaag aattacaaaa catgatatta 2760 caatgtggag atgtggaaca aaatcctggc cctgtcttga tgtatgatgg taataagaaa 2820 ttttgtgtcc cagtctgcaa tggttatttg acttttcatg gcagtcccga acagttcttg 2880 gtgagtggta atggcacact catcatttat aaagaagttt atggaatgct tccttacgaa 2940 gaggcttacc cagaggatct gtctagcaat tggcatattg aatggcagtg tgtcaatggc 3000 aaggttgatt ctttggttaa gaggatggct aattggatgt tgctgcgtta tattgatcta 3060 gttatctttg gtggcacttg gagaaggttg ctcgccccca acacagatat gaaatttgac 3120 tcccagggag ttgatgacat gatgaattct ttgactgggc tgcttaattc ttctgctatg 3180 gagttgctgg gtaatgatgt ttcaaaatct atattgtgct gtctggtccg ctttgttgcg 3240 gtgcttgtca tgttttttcg taatcctgac cttattaatg gagttgcact ggcatcttat 3300 ttagcctctg aattttctag tgtaagactt gtgtcgtctc aaacagccgc ttttgtggat 3360 gcccttttta atggtgattt gtataaactc tctgaacaat tcctttcaat gatggatatt 3420 ggttctgatt ctgactataa acaattaatc aaggagacgt tgggatcgta ccctcctgaa 3480 atgaacccat ttgagtcaca gagtttggct gcatttaatg ctttgtcctt gagtgctcgt 3540 aattgtacat ggtggattga gctcttccag aaattgcaca cgttcgtgcg tgacttattg 3600 aaaccagata cttcggcaaa gtttcatgaa tggtgtagga aaaataagat gctcatttcc 3660 aattttatgt atactcttaa tgagcatttg aaggattgtg ccaccacctg caatttgcgt 3720 aagagggaat ttagagacaa gcataagtgg ttgttatctg ttcttaatcg ccttactgag 3780 ggttttacca cgtatggggt acagaatgat atcacacgag cattgttgga catgcgtaag 3840 agcatgttag ctgttaagct agggcaagaa tatcagaata cgtgtgctcg tgaggagccc 3900 cttggtgtgc tgctacgtgg cgaacctgga caaggaaaat cctttatgac acatctgctc 3960 gtgcgtagtg tttgcaatgc tatgggctgg aaggtttctg agagtgtgtt tagccaccct 4020 acatcaagtg agttctttga tgggtatgct gggcaaccga ttcatcttat cgatgatttt 4080 gggcagaatg tggaggaacc tgaatataaa gttttgtgcc agtgtatgtc ttccatacca 4140 ttttctgtgc ctatggcttc gcttgaggaa aagggtttgc cttatacttc aaagttagtt 4200 attgccacga caaataaatc agattggtca tctcgtacct tgtgcgctcc aggtgctttg 4260 aagcgccggt ttcctattgt ttataccgtt cgcgcacgga ggactttaac caagaatggc 4320 cttcttgatg tcaacgcaca tatgagtgca gtgcgcgatg gagcagcatg ggagtatact 4380 accaatggtt atgactggca acccttttct gttaatgatc ttgctgctga aataattaaa 4440 cagttagagc agcgtaggga atcttttcaa ctctggaatt cttttattag tcaggctcct 4500 gaaacttttg aggcttggtg tgatgatatg gtgtcccttc ttggccctgc tgttccagtt 4560 gcttcagtgt tcgactattg cgctagcact ggtgttgtac ccatgttaaa gcaagcgtcg 4620 gaatctgtcc ttaagtggtt tgattcgtgt gttgacagca tggtgtcgtt tgttacacgt 4680 aacaaaaagt ggattgcttt tggtgcttta actatgagtg tgttaggtat tgctatatct 4740 atgcttaagg aattggacag ccagcgtccc tataatcaga ccgcccataa gatgcctgtt 4800 actaagctca cgcgtgggcg acgtgtgctt gtttcccaag gcccttataa tgaattccag 4860 cattattcta aatactgtgt ttttctccat tctgggtcta ttacacttca tggccttgca 4920 tttggtggta attctttttt gttttacaca catggccttg ctactcttga gcgctatgat 4980 aattgggtgc ttgactataa tgggtccatg tttgatttag atattgaaac tgtggatgag 5040 ttatacttga atggagagtc catggacctt tgtcttatca cctgcaagcc tttacctgtt 5100 acttttgcta gcatcgtggg ccatttgtct gatggagacc ttggagatgg tgtcatcttg 5160 tggcgaggtc gagagggcct aacatgtatg ccaatttatg accttcacca ttatggcact 5220 gtcaccacta accaaggaga tacatgcaca tcagcaatac gctaccgtgc aaaaacgaca 5280 cgcggtatgt gtggtggcct tgttttgtct aaaattagtg gcacttataa agctgttggt 5340 ttgcatgttg ctggaaatgg tgtttatggt gttgcagcaa gtctgagtgt gtgtaagcag 5400 cttgaaagtc aaggactagt caccgacacc aaaccatggc ctggtgtgcg tgtacatcaa 5460 ccttcaaaga gtgttctaaa gccctctcca ctttatggct ttgtcgaaca ggagctccac 5520 ccagcggtgt tgagcccgtt tgacaatcgc ctgaagtgtg aggttgactc tgtgattggc 5580 agacaagctt tgaaatacaa ttcaaatgtt tttaatcctg gaccttacta tgatgaagtg 5640 cttgaggcgt tcgcagttga ttttaatggc aggtttggta ttaatgaaat gatgtcagct 5700 gaagaggtct ttgccctatc tggtgacgaa gcgatcgagc tttctacctc acctggttta 5760 aagtatacta gtaagggctt gagaaagagg gatctcgtgc ctggtggcaa ggcatgtgac 5820 ctattattga gtgatgttga acgccttatg aatgatccaa aaggaactcc tgtctacttc 5880 tactgtcacc ttaaagatga gcttaggccc caagagaaga ttgaacaagg ccttacaagg 5940 tgcattgaaa gtagcgattt tgactatgtt tttagtgcca aaagagtctt ttgcaagctg 6000 ttccggcaac tttatgattc tgaccctatt gagactggat ttgctgttgg tatcaactgt 6060 attgctgact ggaagaattt gttggacggc atgtatgatt acatttatga ttttgatctg 6120 aaaggatatg atggttctat accacgtcag ctcatgatag atgcttgtcg tgtcttgagt 6180 gaaagttgta gtgatgaaga gttagcctac aatttactcc acaaaactgt ggattcacag 6240 catgtggtag gtaaccagct tttgacagtt tctggtggaa tggcttcagg atcacctttt 6300 acaactattg tcaatacagc ttgtaatatc cttgcaaata tgactgttct tgaggaggag 6360 ggtgttgagt atacgctagt gtgttatggt gatgatatac tagtctccac ctccgatccc 6420 atttctgtca atgactatgt tgacaaaatg gggcaatatt ttgggttcac tgtcaagctt 6480 gatggtgatt atcccaagac taaaaataat tttacttttc taaaacggag aactacttac 6540 tggaacggca ttccagttgg agcgatggaa gttggccttt tgttgcaaca tcttgggtat 6600 tgtcggtcag tgagtgtttt ccaggaccaa ttaaattcag caagtataga gcttgctttg 6660 catggcccag aaacgtataa tgtgttgcgt tcgcgcgtca attcattcct gaatggaacc 6720 gggtttgctt tgatgagtta ccgcagggcc gcggcagtgg tgggctctat gctttcctag 6780 atttgtggtc acaattggct gttattctga attgattcta accaattggg tgtgttccaa 6840 tttacttgat tggctctggt tttaatttgt ttaatttggc tgattggatg tattgcaaaa 6900 aaaaaaaaaa aaaaaa 6916 //