ID JQ316114; SV 1; circular; genomic DNA; STD; VRL; 7659 BP. XX AC JQ316114; XX DT 03-JUL-2012 (Rel. 113, Created) DT 03-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Gooseberry vein banding virus isolate RC HC, complete genome. XX KW . XX OS Gooseberry vein banding associated virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7659 RX PUBMED; 22720701. RA Petrzik K., Pribylova J., Spak J.; RT "Molecular analysis of gooseberry vein banding associated virus"; RL Acta Virol. 56(2):119-124(2012). XX RN [2] RP 1-7659 RA Petrzik K., Pribylova J.; RT ; RL Submitted (22-DEC-2011) to the INSDC. RL Department of Plant Virology, Biology Centre AS CR, v.v.i., Institute of RL Plant Molecular Biology, Branisovska 31, Ceske Budejovice 370 05, Czech RL Republic XX DR MD5; e6b97dba06214809eb1362a59ac6bdb0. XX FH Key Location/Qualifiers FH FT source 1..7659 FT /organism="Gooseberry vein banding associated virus" FT /host="Ribes rubrum cv. Holandsky cerveny" FT /isolate="RC HC" FT /mol_type="genomic DNA" FT /country="Czech Republic" FT /collection_date="2011" FT /db_xref="taxon:157270" FT CDS 393..1067 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF 1" FT /db_xref="UniProtKB/TrEMBL:I6U951" FT /protein_id="AFM84637.1" FT /translation="MRKHTALEFEEKAEAWERTERAARHDFVFRNLKTYPRYDTNQRFP FT SCEIPCYHYNTGAGTKVCHATISKEGGNQHFVLNSLFDLEVTQIHNQAVIHDCLTQFIQ FT YSIYKRRKKLRKSRLPTIPEERPLATSEVLKVDPEQISQISSQLTAVKADLREIKSQQS FT QLKTGFNQLRDSIQELLSRESEPKPIEAATAEVADQLKKQLKEVKAVLEDTKKIVRSLT FT PE" FT CDS 1068..1511 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF 2" FT /db_xref="UniProtKB/TrEMBL:I6T385" FT /protein_id="AFM84638.1" FT /translation="MSSWEDTSSKQIYKDALTATNTLYTNGIGEGFVKPAELTGGQVTV FT KAIRQNNTLIELVVGISAKLDNAAAQLRSLDRRISELETAIQAKEAVSLPESIVDDLTK FT EFAKLDAGTGRKAPKIGKKGKFFVWKDPKNDDQNPNRASTSRN" FT CDS 1468..7200 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF 3; contains movement protein, capsid protein, FT aspartic protease, RTase, RNase H" FT /db_xref="GOA:I6U582" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:I6U582" FT /protein_id="AFM84639.1" FT /translation="MTTRTRTEQVPRATSTRPSSRGEASSTLDDQIRGYRQTARLRHNV FT RRRLRSLSPGGFRNTLEQQLSPNQELALSRRRRANLVPAEVLYTHNNNEVVNRVYQHYE FT ERSAHVVDRQMDLRFIEEESYRRLVDEGLQFIHLGMGMVRIHMLHRNSAGIEAMIVFRD FT TRWTDDRQVIASMSVDMTHGSQLVYVIPDAMLSIHDFYNHIQVSIQTRGYNGGWTGGDS FT NMIVTRSLIGRLTNQSTTNFGYQIQGVTDYLTSHGVSCIPGEQWSVTNRSGEWRLQQSS FT IAPPEQVPTEARLRPGPRGEISMRFTNFRDQAVRERALDEDTDSGRPETSGRDETTPYV FT GALRFDFKGRSKPREEECFEVAAPDVLQSWMQQLSRSPPRQNRYQGPEWDTLGEPSGKY FT DYKVRYSAPPPTPWPNKPTGWGDEEEDLPPPRFDSLSESFSGGGEIEPLEYHESSEDSY FT EEVRRRDMENHNNLIAEGFTQEPRFPGLYAPARIEVIEEDHYEGDASEQSRSEEEPEFD FT YPQIAAVVNQNNEPELEYPTKKFQELMAKIKGFQNQKVEIAAMNAESSGSGVTSGNFVP FT PIATTGPSVYPPATGTHGTNIGPQDQGGWGGRMPRSRMPGGYGRPQRPWTLPSAQTENG FT VMLIIPEDLTLAADAINRWESITINVVSKLAFDNMQDKVDYVENLLGEREKEVWTTWRM FT KWEDEYRRMVAISDDTRNLTAAIKRVFGVHDPFTGSTFLQNQAYADLERLSCKRMEDVM FT PFLFTYYQLAAKSGRMWTNEELSDKLFRKLPEAVGPTIEKAYKERYPGLVIGVMARINF FT IIEYLQNVCKQAALQRSLKNLNFCRTMPVPGYYEKKKYGVRKSTTYKGKPHDTHVKVIK FT NKDKNAPGRKCKCYLCGIEGHYARECPKKTVQPQRMAYFEGLALADNWDVLSVDVGESD FT SEGVCSISEGETAGRMDELAAFKTQLPYPVEFEQGMFVLTIEHVTAPAVASGWRRRTEL FT RGDQKVCPHQWSDVAEVSLEDRFCSLCGDNTPVGRRVHCTTCKANLCPVCAWLEFGIRI FT VAAKTDATKWNYLNKDELIAQLYEHNAFLTHQNKALQGRIEELTKGRNNDLIDLCEGDP FT DLMAEICDELFRKPASGETSILRGKERVKLEILEEEVRGYKEEQELRTPLQKLSEGAST FT SYKAPEESDEERVGALLAEGELEKLAAVAGESYSRMPKGGLNKLYHLNVQFVIPKAEGG FT HVSFTVAAIIDTGCTCCCINGAKVPEEAQEEASYAMTFAGVNSRGTTRKKMRAGKMVIS FT GNDFYTPYISVFDMDLPDIDMLIGCNFIKAMQGGIRFEGTEVTIYKKVTTIQTTLEPIK FT LGYAEFDPDIQVELERAYYAAPVSEAELIKLRDHRLLAELKEQGFIGNDPMLHWAKNQV FT KCKLDIINPDITIQGKPPSTATPEIKDRYQRHIDALLSIGVIRPSKSRHRTAAFITYSG FT TSVDPKTGEEIRGKERMVFDYRALNNNTHKDQYTLPGINSIVAAVGNAKIYSKFDLKAG FT FHQVLMEESSIPWTAFITPVGFYEWLVMPFGIANAPAVFQRKMDNCFHKLREFVAVYID FT DILVFSNSLQEHESHLRQMLEVCRKNGLVLSPTKMKVAVTTVEFLGAIIGNGKIKLQPH FT IVKKISEVDDESLRTLKGLRSWLGIINYARNYIPNCGTLLGPLYSKTSENGDRRMSPQD FT WKLVRKVKELVKSLPDLELPPAGAYVVIETDGCMEGWGGVCKWKHKKGESASAEKVCAY FT ASGKFPAIKSTIDAEMHGVMNSLEKFQIYFMDKGEVTIRTDCQAIVAFYEKLNANKPSR FT VRWLNFCDYITNTGVKVVFEHIKGKDNVLADTLSRLTQTLAAVREMPAEQEEILRQALN FT NTEVQPKERRILMDHICGMLEAQAQKASLHQHGLSP" XX SQ Sequence 7659 BP; 2283 A; 1832 C; 2008 G; 1536 T; 0 other; tggtatcaga gcttcggctc tacgttagtc tacatggcta gtttctaatt tacctgtgag 60 gttgtgccat aaagcctaac ccgaggttca aacccagctg atcgtcagac cttcggtctg 120 aggttgtagt gttttccgac gattgtcata gtccgaactc cggaaaagct ttctccttac 180 ggtatcataa ggaggttgct gtttgaaacg ttaggagttg cagagttgca aaaggatcag 240 gcagcccgag agccgttagc cgtgggaggc gccgaggcga atagtggtgt ccctgatatg 300 agcaaggtga gcaacgagaa acgagtatct agagcagtag ccaacaccgg ccggagaata 360 gtaaagtaac gactcaagac gtgacagtct atatgcggaa acacacagcc ttagaatttg 420 aagagaaggc tgaagcttgg gagagaactg aaagggcggc gaggcacgac ttcgttttta 480 gaaacttgaa gacttacccc cggtacgata ccaaccagag gtttcccagt tgcgagatcc 540 cttgttatca ctacaatact ggcgcgggaa cgaaagtttg ccacgcaaca atctccaaag 600 aaggcggaaa ccagcacttt gtgcttaaca gtctgtttga cttagaagtc actcagattc 660 ataaccaagc agtcatccac gactgtttga cccagtttat acagtactcc atctacaaga 720 gaaggaagaa actcaggaag agtagacttc caacgatccc ggaggagcgg cctttggcta 780 cctctgaggt cttgaaggta gatccggagc agatctccca gatctcatca cagctcaccg 840 ctgtgaaggc agatctccga gagatcaaga gtcagcaatc ccagctcaag acgggattca 900 accagctgag agattccatc caggaattac tctccagaga atcggaaccc aaaccgattg 960 aagcagccac agctgaggtg gccgatcagc tcaagaagca gcttaaggaa gttaaggctg 1020 tgcttgagga caccaagaag atcgtcagat ctttgacccc ggagtagatg agcagctggg 1080 aagacacttc cagtaagcag atctacaagg acgcgttaac cgcaacaaac acgctctaca 1140 ccaacggcat cggcgaaggg ttcgtcaagc cagcagagct aacagggggt caggtcaccg 1200 taaaggcgat ccgacagaac aacacgctca tcgagctagt tgttgggata agtgcgaagc 1260 tagataacgc tgccgcacaa ctaagaagcc tcgacaggag gatatcggag ctcgaaacag 1320 ccatccaggc aaaggaggct gtatccttac cggagagtat agtcgacgac ctcaccaagg 1380 agttcgccaa actagacgcc ggaacaggaa ggaaggctcc taagatcggg aagaaaggca 1440 agttcttcgt gtggaaagac ccgaagaatg acgaccagaa cccgaacaga gcaagtacct 1500 cgcgcaacta gcacccgacc cagtagtcgc ggtgaggcgt cgtcaaccct agacgaccag 1560 atacgagggt acagacagac cgccagacta agacacaatg tcaggcgaag actaaggagt 1620 ttatctcctg gtgggttcag gaacacgcta gagcagcagc ttagccctaa tcaagagcta 1680 gcactaagta gaaggagacg agcgaacctc gtgccagcag aagtgctcta cacccacaac 1740 aacaatgagg tagtcaatag agtctaccag cactacgagg agcgaagcgc gcacgtagtg 1800 gacagacaga tggaccttcg gttcatcgag gaggagtcct atcgcaggct agtcgatgag 1860 ggcttacagt tcattcacct tggcatgggg atggtaagga tccacatgtt acacagaaac 1920 tcggccggga ttgaggccat gatagtcttc agagacacaa ggtggaccga cgacaggcag 1980 gtgatagcca gcatgtccgt cgatatgaca cacggatcac agttggtata tgtgattccg 2040 gatgcgatgc tctccatcca tgatttctac aatcacatcc aggtcagcat acagaccagg 2100 ggatacaacg gaggatggac gggtggtgac tctaacatga tagtcaccag gtcactgatt 2160 ggtaggttaa ccaaccagag cacgaccaac tttggttacc aaatacaagg agtcacggac 2220 tacctcacaa gccatggagt ctcttgcatt ccaggagaac aatggagtgt aaccaacaga 2280 tcaggagagt ggcgattaca gcaatcatcc attgcgccac cggagcaggt ccctacggag 2340 gctaggctaa ggccaggacc tagaggtgaa atcagcatga ggttcacgaa cttccgagac 2400 caggcggttc gggagagagc gttggacgaa gataccgaca gtggtagacc agaaacaagt 2460 gggcgagatg aaacaacgcc ctatgttggt gcgctgagat tcgatttcaa aggcaggtca 2520 aaaccacgag aagaggagtg cttcgaagta gcagctccag acgtgcttca aagctggatg 2580 caacagctat ccagaagtcc accaaggcag aatcgctacc aaggccctga atgggatacg 2640 ctaggcgagc caagtggcaa gtatgactac aaggtcaggt actcagcacc accaccaaca 2700 ccgtggccaa ataagccaac tggttggggg gatgaagaag aggatcttcc accaccaaga 2760 tttgactcat tgtcagaatc tttttcgggg gggggggaga tagaaccttt ggagtaccac 2820 gaaagcagcg aagacagcta tgaagaggtc agaaggcgtg atatggaaaa tcacaacaac 2880 ctcatagcag agggattcac ccaggaacct aggttcccag gcttatacgc gccagccagg 2940 atagaagtga tcgaggaaga tcactatgaa ggtgacgcta gtgagcaaag tcggtctgag 3000 gaggagccgg aattcgacta tccccagata gcagcagtgg tgaaccaaaa caacgaaccc 3060 gaactggaat atccgacaaa aaaattccag gagcttatgg ctaaaatcaa agggttccag 3120 aaccagaagg tggagattgc cgccatgaac gctgagtctt cgggatcagg cgtaacatcg 3180 ggcaactttg tgccaccaat agcaaccact ggtccatcag tatacccgcc agctacggga 3240 acacatggca ctaacatcgg gccacaggac caaggaggtt ggggagggcg tatgcccagg 3300 agtagaatgc caggagggta tggtaggcct cagaggccat ggaccttgcc ttcagcgcag 3360 accgagaacg gcgtcatgct aatcattccg gaggatttaa ccctcgcagc agatgctatc 3420 aacagatggg agtcaatcac catcaacgtc gtcagcaaac ttgccttcga caacatgcag 3480 gacaaagtcg actacgtcga aaacctgctg ggtgaacgtg aaaaggaagt ttggaccact 3540 tggagaatga agtgggaaga cgagtaccgg cggatggttg ccatttcaga tgacaccaga 3600 aatctgaccg ccgcaatcaa aagggtgttt ggggtacatg acccattcac aggaagtacc 3660 ttcctacaaa accaggccta tgcggacttg gagaggttaa gctgcaaaag aatggaggac 3720 gtgatgccat tcctattcac gtactatcag ctggcagcaa aatccggtag gatgtggaca 3780 aacgaagagc tctccgataa actgtttcgg aagctaccag aggcagtagg ccccacaata 3840 gagaaagcct acaaagagcg ctacccaggg ttagtaatcg gggtaatggc tcggatcaac 3900 ttcataatcg agtacctgca gaacgtgtgc aaacaagcag cgttacagcg gagtttgaag 3960 aatctcaact tctgccgaac aatgccagtg ccagggtact acgagaagaa gaagtatgga 4020 gtgcgcaagt ccacaacata caaaggtaaa ccacatgaca ctcatgtgaa ggttatcaag 4080 aacaaggaca agaacgcacc agggcgcaag tgtaaatgct acctttgcgg catagaaggc 4140 cattacgcaa gggaatgccc taagaagacg gtacagccac aaaggatggc gtacttcgaa 4200 ggtctcgctc tcgcggataa ttgggatgtt ctttctgtag acgtcgggga aagcgacagc 4260 gaaggagtct gctccatttc tgaaggagag acagcaggca ggatggatga gctagcagcg 4320 ttcaaaacac agctccccta ccctgtagag ttcgaacagg gcatgttcgt tctcaccatt 4380 gagcacgtca ccgctcctgc agtagcctca ggatggcgca ggcgtacaga gctacgaggt 4440 gaccagaagg tgtgtccgca ccaatggagt gacgtcgccg aggtgtcact agaggacaga 4500 ttctgttctc tctgcggaga caatacgcca gtcggcagaa gggtacattg cacgacatgt 4560 aaggcaaacc tgtgcccagt ttgcgcttgg ttggagtttg gcatcagaat tgtagcagcc 4620 aaaactgacg ccaccaagtg gaactacctg aataaggatg agttgatcgc tcagctgtac 4680 gagcacaacg cattcctcac tcaccagaac aaagctctgc aaggtagaat tgaggagtta 4740 acaaaaggcc gaaacaatga tctcatcgat ctttgtgaag gtgatccaga cctcatggca 4800 gagatttgcg acgagctttt ccgcaagcca gctagcggag aaacctcgat tttgcggggg 4860 aaggagaggg taaaactcga aatcctggaa gaagaagtcc gaggatacaa agaagagcaa 4920 gagctcagga cccccctaca aaaactttct gagggtgcat caacatctta caaggcacca 4980 gaagaaagcg atgaagaaag agtcggagca ctcttagctg aaggagaatt agagaaactc 5040 gctgccgttg caggagaatc ctattctcgc atgcctaaag gtggcctaaa caagctgtat 5100 cacttaaatg tgcagtttgt catccccaaa gctgagggtg gtcacgttag cttcacagtc 5160 gcggccataa ttgatacagg gtgcacctgt tgctgtataa acggcgcgaa agttccagaa 5220 gaagctcaag aggaagcctc atatgcaatg acgttcgcgg gcgtcaactc gagaggcaca 5280 acaagaaaga agatgagggc gggaaaaatg gtcatcagtg ggaatgattt ctacaccccc 5340 tacatctcag tctttgacat ggacctccca gacattgata tgctgatagg atgtaacttc 5400 atcaaagcca tgcaaggagg gatcaggttc gaaggcactg aagtcaccat ctacaagaag 5460 gtgaccacaa tccagacgac tctggagcct atcaaattgg gctatgcaga gttcgaccct 5520 gacatccagg tggagcttga aagggcttac tatgccgctc cagtgtcaga agcggagctg 5580 ataaagctca gggatcacag gctgctcgct gaattaaaag agcaaggctt cataggcaac 5640 gacccaatgt tgcactgggc aaagaaccag gtcaagtgca agcttgacat tatcaacccg 5700 gatatcacca tccagggcaa gccgcctagc acagccacac ctgagatcaa agaccgctac 5760 cagcgtcaca tagatgcact gctatccatt ggggtcatcc gaccaagcaa aagcaggcac 5820 cgaacagcgg cattcatcac ctattcgggc actagcgtgg acccgaagac tggggaagaa 5880 atcagaggca aagaaaggat ggtcttcgac tatcgcgctc tgaacaacaa cacgcacaag 5940 gaccagtaca cattgcctgg catcaactcg atcgtagcag ctgttggcaa cgccaaaatc 6000 tacagcaaat tcgacttgaa ggctggtttc caccaggtcc taatggaaga atcctctatc 6060 ccttggacag cgttcatcac gcccgtagga ttctatgaat ggttggtaat gcctttcggt 6120 attgctaacg ctccagcggt tttccagagg aaaatggata actgcttcca caagctgaga 6180 gagttcgtcg cggtttatat cgacgacatc ctcgtcttca gcaattccct gcaagaacat 6240 gagagccatt tacggcaaat gctggaagtt tgcaggaaga atgggttggt gctgtcacca 6300 acaaaaatga aggttgctgt cacaacagta gaattcctag gggccatcat cggcaatggg 6360 aaaatcaagt tgcagcctca catcgtcaag aagatttctg aagttgacga tgaatccctc 6420 agaaccctca aagggttaag aagctggttg ggcataatca actatgccag gaattacatt 6480 cctaactgtg gaactttgct tggtccactt tacagcaaaa ctagcgaaaa tggggatcga 6540 agaatgagtc ctcaggactg gaagctggtc aggaaggtca aagagctcgt caagagtctg 6600 ccagacttag agctaccacc agcaggagcc tatgtggtca tcgaaacaga cggctgcatg 6660 gaaggatggg gaggagtgtg caaatggaag cacaagaaag gagaatctgc ctcagcagag 6720 aaagtctgcg catatgcaag tggcaaattc ccggctatca aatccaccat cgatgctgag 6780 atgcatggag taatgaactc cctggaaaaa ttccagatct acttcatgga caaaggtgag 6840 gtcaccatca gaacagactg ccaggccata gtagcgttct acgaaaagct caacgctaat 6900 aaaccttcga gggttcgctg gcttaacttc tgtgactaca tcaccaatac aggagtcaag 6960 gtcgtcttcg agcacatcaa agggaaggac aacgtcctag cagacacgct cagccgactc 7020 acacagacct tagctgcggt tcgggagatg cccgcagaac aggaagagat cctcagacag 7080 gctctcaaca atactgaggt ccagcccaag gaacgaagga tcctcatgga tcacatctgt 7140 ggaatgctgg aagcccaggc ccaaaaggcc agtctccacc aacatgggct tagcccatga 7200 tctatctgat aatggaagct gacgcaccgg atgacttcac cataaatgat tcgtcatcgc 7260 ttacgccatc agctctatta ttgctttact tttgtaagtg cgcctgtagt gcgctgagtc 7320 agggaatctt atcccttatg tcctttagcc acactttcgg tggtagtgga tgcttttagt 7380 acaagcatta ttgtaaaagc taagcttttg agctgtcgat ggggcccaat gagcacccga 7440 gcttcaaaac cttatcttct actccctata tatggagtct taggtagaag gagcaaggca 7500 tcgaatagct ttcatcgaat gtctttccct tccttgtaag cattattcct caataaacaa 7560 atcttccgca atactctgtt tcctttcttt agttctttac tgttacctag ccagtcagta 7620 gagaagatcc aggaaaattt tatttttccg ggaccattt 7659 //