ID JQ267586; SV 1; linear; genomic RNA; STD; VRL; 3477 BP. XX AC JQ267586; XX DT 02-JAN-2013 (Rel. 115, Created) DT 02-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Grapevine leafroll-associated virus 3 isolate SK04 HSP90-like protein gene, DE partial cds; coat protein, divergent coat protein, and 21 kDa protein DE genes, complete cds; and 19.6 kDa protein gene, partial cds. XX KW . XX OS Grapevine leafroll-associated virus 3 OC Viruses; Riboviria; Closteroviridae; Ampelovirus. XX RN [1] RP 1-3477 RA Glasa M., Predajna L.; RT "Variability of Grapevine leafroll-associated virus 3 in Slovakia"; RL Unpublished. XX RN [2] RP 1-3477 RA Glasa M., Predajna L.; RT ; RL Submitted (09-DEC-2011) to the INSDC. RL Plant Virology, Institute of Virology, Slovak Academy of Sciences, RL Dubravska Cesta 9, Bratislava 84505, Slovakia XX DR MD5; be95270e995dfc46dc77abb846aff358. XX FH Key Location/Qualifiers FH FT source 1..3477 FT /organism="Grapevine leafroll-associated virus 3" FT /host="Vitis vinifera" FT /isolate="SK04" FT /mol_type="genomic RNA" FT /country="Slovakia" FT /collection_date="2010" FT /db_xref="taxon:55951" FT CDS <1..149 FT /codon_start=3 FT /product="HSP90-like protein" FT /db_xref="UniProtKB/TrEMBL:K9MBE8" FT /protein_id="AFU64554.1" FT /translation="DGTLGYDTADCITSKVRNTINTADHASIIHYIKTNENQVTGTTLP FT HQL" FT CDS 239..1180 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:K9MBH0" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:K9MBH0" FT /protein_id="AFU64555.1" FT /translation="MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQ FT AELTGIAVVPENYVFATAALATAAQVPPRQPPAQVVEPQETDIGVVPESETLTPNKLVF FT EKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADD FT AATKTKFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYE FT NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAI FT LAWNLARQQAFRNKTVTADNTLHNVFQLLQKK" FT CDS 1243..2676 FT /codon_start=1 FT /product="divergent coat protein" FT /db_xref="GOA:K9MBQ6" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:K9MBQ6" FT /protein_id="AFU64556.1" FT /translation="MGAYTHVDFHESRLLKDKQDYLPFKSANEAPPDPPGYVRPDGYVR FT AYLIQRADFPNTQSLSVTLSIASNKLASGLMGSDAVSSSFMLMNDAGDYFECGVCHNKP FT YLGREVIFCRKYLGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTD FT VSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPL FT KKSFNARIEDVLNIDDTSLLVPSPVVPESTGGVGPSEQLDVVALTSDVTELINTRGQGK FT ICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQL FT FVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFT FT HTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAI FT KSANLRRKGSETYNILESI" FT CDS 2687..3244 FT /codon_start=1 FT /product="21 kDa protein" FT /db_xref="UniProtKB/TrEMBL:E5KGN1" FT /protein_id="AFU64557.1" FT /translation="MEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDNCAVKSFRDT FT DTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEI FT SEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNK FT EKFKGRDILDTYVLSSDYPGFK" FT CDS 3241..>3477 FT /codon_start=1 FT /product="19.6 kDa protein" FT /db_xref="UniProtKB/TrEMBL:K9MBS4" FT /protein_id="AFU64558.1" FT /translation="MKLLSLRYLLLRLSKSLRTNDHLVLILIKEALINYYNASFTDEGA FT VLRDSRESIENFLVARCGSQNSCRVMKALITNTV" XX SQ Sequence 3477 BP; 1057 A; 673 C; 839 G; 908 T; 0 other; tagacggtac gttagggtat gacacggctg attgtataac ttctaaggtg agaaatacga 60 tcaacaccgc agatcacgct agcattatac actatatcaa gacgaacgaa aaccaggtta 120 ccggaactac tctaccacac cagctttaaa gctgcgtgta gtatgcgacg atgtttctcg 180 tattagtttt ataaaaattt ttaattgctt tgtgtgtggt ttttgttgag tgaacgcgat 240 ggcatttgaa ctgaaattag ggcagatata tgaagtcgtc cccgaaaata atttgagagt 300 tagagtaggg gatgcggcac aaggaaaatt tagtaaggcg agtttcttaa agtacgttaa 360 ggacgggaca caggcggaat taacgggaat cgccgtagtg cccgaaaatt acgtattcgc 420 cacagcagct ttggctacag cggcgcaggt gccacctagg cagccaccag cgcaagtggt 480 ggaaccacag gaaaccgata taggggtagt gccggaatct gagactctca caccaaataa 540 gttggttttc gagaaagatc cagacaagtt cttgaagact atgggcaagg gaatagcttt 600 ggacttgacg ggagttaccc acaaaccgaa agttattaac gagccaggga aagtatcagt 660 agaggtggca atgaagatta atgccgcatt gatggagctg tgtaagaagg ttatgggcgc 720 cgatgacgca gcaactaaga caaaattctt cttgtacgtg atgcagattg cttgcacgtt 780 ctttacatcg tcttcgacgg agttcaaaga gtttgactac atagaaaccg atgatggaaa 840 gaagatatat gcggtgtggg tatatgattg cattaaacaa gctgctgctt cgacgggtta 900 tgaaaacccg gtaaggcagt atctagcgta cttcacacca accttcatca cggcgaccct 960 gaatggtaaa ctagtgatga acgagaaggt tatggcacag catggagtac caccgaaatt 1020 ctttccgtac acgatagact gcgttcgtcc gacgtacgat ctgttcaaca acgacgcaat 1080 actagcatgg aatttagcta gacagcaggc gtttagaaac aagacggtaa cggccgataa 1140 caccttacat aacgtcttcc aactattgca aaagaagtag ctacgatcga tgtctataaa 1200 ttggtgaaaa atttagaaat atttaccttt tattgataat tcatgggggc ttatacacat 1260 gtagactttc atgagtcgcg gttgctgaaa gacaaacaag actatcttcc tttcaagtca 1320 gcgaatgaag ctcctcctga tcctcccgga tacgttcgcc cagatggtta tgtgagggct 1380 tatttgatac aaagagcaga ctttcccaat actcaaagct tatcagttac gttatcgata 1440 gccagtaata agttagcttc gggtcttatg ggaagcgacg cagtatcatc gtcgtttatg 1500 ctgatgaacg acgcgggaga ttacttcgag tgcggcgtgt gtcacaacaa accctactta 1560 ggacgggaag ttatcttctg taggaaatac ttaggtggga gaggagtgga gatcaccact 1620 ggtaagaact acacgtcgaa caattggaac gaggcgtcgt acgtaataca agtgaacgta 1680 gtcgatgggt tagcacagac cactgttaat tctacttata cgcaaacgga cgttagtggt 1740 ctacccaaaa attggacgcg tatctacaaa ataacaaaga tagtgtccgt agatcagaac 1800 ctctaccctg gttgtttctc agactcgaaa ctgggtgtaa tgcgtataag gtcactgtta 1860 gtttccccag tgcgcatctt ctttagggat atcttattga aacctttgaa gaaatcgttc 1920 aacgcaagaa tcgaggatgt gctgaatatt gacgacacgt cgttgttagt accgagtcct 1980 gtcgtaccag agtctacggg aggtgtaggt ccatcagagc agctggatgt agtggcttta 2040 acgtccgacg taacggaatt gatcaacact agggggcaag gtaagatatg ttttccagac 2100 tcagtgttat cgatcaatga agcggatatc tatgatgagc ggtatttgcc gataacggaa 2160 gctctacaga taaacgcaag actacgcaga ctcgttcttt cgaaaggcgg gagtcaaaca 2220 ccacgagata tggggaatat gatagtggcc atgatacaac ttttcgtact ctactctact 2280 gtaaagaata taagcgtcaa agacgggtat agggtggaga ccgaattagg tcaaaagaaa 2340 gtctacttaa gttattcgga agtaagggaa gctatattag gagggaaata cgatgcgtct 2400 ccaaccaaca ctgtgcgatc cttcatgagg tattttactc acaccaccat tactctactt 2460 atagagaaga aaattcagcc agcgtatact gccctagcta agcacggcgt cccgaagagg 2520 ttcactccgt actgcttcga cttcgcacta ctggataaca gatattaccc ggcggacgtg 2580 ttgaaggcta acgcaatggc ttgcgctata gcgattaaat cagctaattt aaggcgtaaa 2640 ggttcggaga cgtataacat cttagaaagc atttgattat ctaaagatgg aattcagacc 2700 agttttaatt acagttcgcc gtgatcccgg cgtaaacact ggtagtttga aagtgatagc 2760 ttatgactta cactacgaca atatattcga taactgcgcg gtaaagtcgt ttcgagacac 2820 cgacactgga ttcactgtta tgaaagaata ttcgacgaat tcagcgttta tactaagtcc 2880 ttataaactg ttttccgcgg tctttaataa ggaaggtgag atgataagta acgatgtagg 2940 atcgagtttc agggtttaca atatcttttc gcaaatgtgt aaagatatca acgagatcag 3000 cgagatacaa cgtgccggtt acctagaaac atatttagga gacgggcagg ctgacactga 3060 tatatttttt gatgtcttaa ccaacaacaa agcaaaggta aggtggttag ttaataaaga 3120 ccatagcgcg tggtgtggga tattgaatga tttgaagtgg gaagagagca acaaggagaa 3180 atttaagggg agagacatac tagatactta cgttttatcg tctgattatc cagggtttaa 3240 atgaagttgc tttcgctccg ctatcttcta ttaaggttgt caaagtcgct tagaacgaac 3300 gatcacttgg ttttaatact tataaaggag gcgcttataa actattacaa cgcctctttc 3360 accgatgagg gtgccgtatt aagagactct cgcgaaagta tagagaattt tctcgtagcc 3420 aggtgcggtt cgcaaaattc ctgccgagtc atgaaggctt tgatcactaa cacagtc 3477 //